# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RTfmpvalue(RPackage):
    """Efficient and Accurate P-Value Computation for Position Weight Matrices.

    In putative Transcription Factor Binding Sites (TFBSs) identification from
    sequence/alignments, we are interested in the significance of certain match
    score. TFMPvalue provides the accurate calculation of P-value with score
    threshold for Position Weight Matrices, or the score with given P-value.
    This package is an interface to code originally made available by Helene
    Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15."""

    cran = "TFMPvalue"

    version('0.0.8', sha256='6d052529f7b59d0384edc097f724f70468013777b6adf4c63e61a359029d3841')
    version('0.0.6', sha256='cee3aa2d4e22856865d820f695e29a5f23486e5e08cd42cb95a0728f5f9522a1')

    depends_on('r@3.0.1:', type=('build', 'run'))
    depends_on('r-rcpp@0.11.1:', type=('build', 'run'))