# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class RTxdbHsapiensUcscHg19Knowngene(RPackage):
    """Annotation package for TxDb object(s).

    Exposes an annotation databases generated from UCSC by exposing these as
    TxDb objects."""

    # This is a bioconductor package but there is no available git repo.
    bioc = "TxDb.Hsapiens.UCSC.hg19.knownGene"
    url = "https://bioconductor.org/packages/release/data/annotation/src/contrib/TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz"

    version("3.2.2", sha256="063de2b1174782a0b2b8ab7f04a0bdf3c43252cb67c685a9f8ef2b8e318352e9")

    depends_on("r-genomicfeatures@1.21.30:", type=("build", "run"))
    depends_on("r-annotationdbi", type=("build", "run"))