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| author | snehring <snehring@users.noreply.github.com> | 2022-05-11 17:12:32 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-05-11 22:12:32 +0000 |
| commit | 66d364820058590be7e00c2a9cef78d913d990fb (patch) | |
| tree | 2a3417db96c41cf11c24e6f109f4489153961729 | |
| parent | d2fc7b9f7d3e738ee14001581d5f69d7897bf86a (diff) | |
| download | spack-66d364820058590be7e00c2a9cef78d913d990fb.tar.gz spack-66d364820058590be7e00c2a9cef78d913d990fb.tar.bz2 spack-66d364820058590be7e00c2a9cef78d913d990fb.tar.xz spack-66d364820058590be7e00c2a9cef78d913d990fb.zip | |
bamutil: updating to 1.0.15 (#30623)
* bamutil: updating to 1.0.15
* bamutil: switching to github archive
| -rw-r--r-- | var/spack/repos/builtin/packages/bamutil/package.py | 26 |
1 files changed, 18 insertions, 8 deletions
diff --git a/var/spack/repos/builtin/packages/bamutil/package.py b/var/spack/repos/builtin/packages/bamutil/package.py index b41d564fb0..af17ee24ca 100644 --- a/var/spack/repos/builtin/packages/bamutil/package.py +++ b/var/spack/repos/builtin/packages/bamutil/package.py @@ -13,17 +13,18 @@ class Bamutil(MakefilePackage): """ homepage = "https://genome.sph.umich.edu/wiki/BamUtil" - url = "https://genome.sph.umich.edu/w/images/7/70/BamUtilLibStatGen.1.0.13.tgz" + url = "https://github.com/statgen/bamUtil/archive/refs/tags/v1.0.15.tar.gz" + git = "https://github.com/statgen/bamUtil.git" + maintainers = ['snehring'] - version('1.0.13', sha256='16c1d01c37d1f98b98c144f3dd0fda6068c1902f06bd0989f36ce425eb0c592b') + version('1.0.15', sha256='24ac4bdb81eded6e33f60dba85ec3d32ebdb06d42f75df775c2632bbfbd8cce9') + version('1.0.13', sha256='16c1d01c37d1f98b98c144f3dd0fda6068c1902f06bd0989f36ce425eb0c592b', + url='https://genome.sph.umich.edu/w/images/7/70/BamUtilLibStatGen.1.0.13.tgz') - depends_on('zlib', type=('build', 'link')) + depends_on('zlib') + depends_on('git', type='build', when='@1.0.15:') - # Looks like this will be fixed in 1.0.14. - # https://github.com/statgen/libStatGen/issues/9 - patch('libstatgen-issue-9.patch', when='@1.0.13:') - # These are fixed in the standalone libStatGen, - # but bamutil@1.0.13 embeds its own copy, so fix 'em here. + patch('libstatgen-issue-9.patch', when='@1.0.13') patch('libstatgen-issue-19.patch', when='@1.0.13') patch('libstatgen-issue-17.patch', when='@1.0.13') patch('libstatgen-issue-7.patch', when='@1.0.13') @@ -31,6 +32,15 @@ class Bamutil(MakefilePackage): parallel = False + @when('@1.0.15') + def edit(self, spec, prefix): + filter_file('git://', 'https://', 'Makefile.inc', String=True) + + @when('@1.0.15:') + def build(self, spec, prefix): + make('cloneLib') + make() + @property def install_targets(self): return ['install', 'INSTALLDIR={0}'.format(self.prefix.bin)] |