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| author | Glenn Johnson <glenn-johnson@uiowa.edu> | 2022-03-21 09:18:19 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-03-21 15:18:19 +0100 |
| commit | b4ab4ddc2742d52baa768db2f7a1769f594c5224 (patch) | |
| tree | 6e710f2a7e7a3d0e4a413476bdfadcdfcafd57f5 | |
| parent | f2b123760ccd22cf2c7375a96d9551b04a3c3f0b (diff) | |
| download | spack-b4ab4ddc2742d52baa768db2f7a1769f594c5224.tar.gz spack-b4ab4ddc2742d52baa768db2f7a1769f594c5224.tar.bz2 spack-b4ab4ddc2742d52baa768db2f7a1769f594c5224.tar.xz spack-b4ab4ddc2742d52baa768db2f7a1769f594c5224.zip | |
augustus: explicitly depend on ncurses (#29597)
| -rw-r--r-- | var/spack/repos/builtin/packages/augustus/bam2wig_Makefile.patch | 2 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/augustus/package.py | 1 |
2 files changed, 2 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/augustus/bam2wig_Makefile.patch b/var/spack/repos/builtin/packages/augustus/bam2wig_Makefile.patch index bbd5bfeef6..45dce94cc3 100644 --- a/var/spack/repos/builtin/packages/augustus/bam2wig_Makefile.patch +++ b/var/spack/repos/builtin/packages/augustus/bam2wig_Makefile.patch @@ -17,7 +17,7 @@ - HTSERRHINT:=$(HTSERRHINT)"Check if HTSlib is installed and of version 1.10 or higher - see README.txt" -endif +INCLUDES=-I$(HTSLIBDIR)/include/htslib -+HTSLIBS=-L$(HTSLIBDIR)/lib -Wl,-rpath,$(HTSLIBDIR)/lib -lhts -lcurses -lm -lz -lpthread -lcurl -lssl -lcrypto -lbz2 -llzma ++HTSLIBS=-L$(HTSLIBDIR)/lib -Wl,-rpath,$(HTSLIBDIR)/lib -lhts -lncurses -lm -lz -lpthread -lcurl -lssl -lcrypto -lbz2 -llzma CFLAGS:=-Wall -O2 $(CFLAGS) CC?=gcc diff --git a/var/spack/repos/builtin/packages/augustus/package.py b/var/spack/repos/builtin/packages/augustus/package.py index c5bcd71f18..b158c5b346 100644 --- a/var/spack/repos/builtin/packages/augustus/package.py +++ b/var/spack/repos/builtin/packages/augustus/package.py @@ -39,6 +39,7 @@ class Augustus(MakefilePackage): depends_on('htslib') depends_on('bcftools') depends_on('samtools') + depends_on('ncurses') depends_on('curl', when='@3.3.1:') depends_on('sqlite', when='@3.4.0:') depends_on('mysql-client', when='@3.4.0:') |