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| author | Adam J. Stewart <ajstewart426@gmail.com> | 2017-01-16 18:13:37 -0800 |
|---|---|---|
| committer | Todd Gamblin <tgamblin@llnl.gov> | 2017-01-16 20:00:31 -0800 |
| commit | c0aaa8fcea6a9524c7fe0de08c7b373f2aba62d6 (patch) | |
| tree | dea5ec2c5bb0f52ff7ed81ee3cfa593bf004d8ad | |
| parent | 1f49493feed526f715aec0fef0ffe83c56aab117 (diff) | |
| download | spack-c0aaa8fcea6a9524c7fe0de08c7b373f2aba62d6.tar.gz spack-c0aaa8fcea6a9524c7fe0de08c7b373f2aba62d6.tar.bz2 spack-c0aaa8fcea6a9524c7fe0de08c7b373f2aba62d6.tar.xz spack-c0aaa8fcea6a9524c7fe0de08c7b373f2aba62d6.zip | |
Add PythonPackage base class
- Add a PythonPackage class with build system support.
- Support build phases in PythonPackage
- Add a custom sanity check for PythonPackages
- Get rid of nolink dependencies in python packages
- Update spack create to use new PythonPackage class
- Port most of Python packages to new PythonPackage class
- Conducted a massive install and activate of Python packages.
- Fixed bugs introduced by install and activate.
- Update API docs on PythonPackage
169 files changed, 849 insertions, 1011 deletions
diff --git a/lib/spack/spack/__init__.py b/lib/spack/spack/__init__.py index 901b8f115c..1f8926e28d 100644 --- a/lib/spack/spack/__init__.py +++ b/lib/spack/spack/__init__.py @@ -159,9 +159,10 @@ from spack.package import Package from spack.build_systems.makefile import MakefilePackage from spack.build_systems.autotools import AutotoolsPackage from spack.build_systems.cmake import CMakePackage +from spack.build_systems.python import PythonPackage from spack.build_systems.r import RPackage __all__ += ['Package', 'CMakePackage', 'AutotoolsPackage', 'MakefilePackage', - 'RPackage'] + 'PythonPackage', 'RPackage'] from spack.version import Version, ver __all__ += ['Version', 'ver'] diff --git a/lib/spack/spack/build_systems/python.py b/lib/spack/spack/build_systems/python.py new file mode 100644 index 0000000000..d21c291ae6 --- /dev/null +++ b/lib/spack/spack/build_systems/python.py @@ -0,0 +1,309 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## + +import inspect + +from spack.directives import extends +from spack.package import PackageBase + +from llnl.util.filesystem import working_dir + + +class PythonPackage(PackageBase): + """Specialized class for packages that are built using Python + setup.py files + + This class provides the following phases that can be overridden: + + * build + * build_py + * build_ext + * build_clib + * build_scripts + * clean + * install + * install_lib + * install_headers + * install_scripts + * install_data + * sdist + * register + * bdist + * bdist_dumb + * bdist_rpm + * bdist_wininst + * upload + * check + + These are all standard setup.py commands and can be found by running: + + .. code-block:: console + + $ python setup.py --help-commands + + By default, only the 'build' and 'install' phases are run, but if you + need to run more phases, simply modify your ``phases`` list like so: + + .. code-block:: python + + phases = ['build_ext', 'install', 'bdist'] + + Each phase provides a function <phase> that runs: + + .. code-block:: console + + $ python --no-user-cfg setup.py <phase> + + Each phase also has a <phase_args> function that can pass arguments to + this call. All of these functions are empty except for the ``install_args`` + function, which passes ``--prefix=/path/to/installation/directory``. + + If you need to run a phase which is not a standard setup.py command, + you'll need to define a function for it like so: + + .. code-block:: python + + def configure(self, spec, prefix): + self.setup_py('configure') + """ + # Default phases + phases = ['build', 'install'] + + # To be used in UI queries that require to know which + # build-system class we are using + build_system_class = 'PythonPackage' + + extends('python') + + def setup_file(self, spec, prefix): + """Returns the name of the setup file to use.""" + return 'setup.py' + + def build_directory(self): + """The directory containing the ``setup.py`` file.""" + return self.stage.source_path + + def python(self, *args): + inspect.getmodule(self).python(*args) + + def setup_py(self, *args): + setup = self.setup_file(self.spec, self.prefix) + + with working_dir(self.build_directory()): + self.python(setup, '--no-user-cfg', *args) + + # The following phases and their descriptions come from: + # $ python setup.py --help-commands + # Only standard commands are included here, but some packages + # define extra commands as well + + def build(self, spec, prefix): + """Build everything needed to install.""" + args = self.build_args(spec, prefix) + + self.setup_py('build', *args) + + def build_args(self, spec, prefix): + """Arguments to pass to build.""" + return [] + + def build_py(self, spec, prefix): + '''"Build" pure Python modules (copy to build directory).''' + args = self.build_py_args(spec, prefix) + + self.setup_py('build_py', *args) + + def build_py_args(self, spec, prefix): + """Arguments to pass to build_py.""" + return [] + + def build_ext(self, spec, prefix): + """Build C/C++ extensions (compile/link to build directory).""" + args = self.build_ext_args(spec, prefix) + + self.setup_py('build_ext', *args) + + def build_ext_args(self, spec, prefix): + """Arguments to pass to build_ext.""" + return [] + + def build_clib(self, spec, prefix): + """Build C/C++ libraries used by Python extensions.""" + args = self.build_clib_args(spec, prefix) + + self.setup_py('build_clib', *args) + + def build_clib_args(self, spec, prefix): + """Arguments to pass to build_clib.""" + return [] + + def build_scripts(self, spec, prefix): + '''"Build" scripts (copy and fixup #! line).''' + args = self.build_scripts_args(spec, prefix) + + self.setup_py('build_scripts', *args) + + def clean(self, spec, prefix): + """Clean up temporary files from 'build' command.""" + args = self.clean_args(spec, prefix) + + self.setup_py('clean', *args) + + def clean_args(self, spec, prefix): + """Arguments to pass to clean.""" + return [] + + def install(self, spec, prefix): + """Install everything from build directory.""" + args = self.install_args(spec, prefix) + + self.setup_py('install', *args) + + def install_args(self, spec, prefix): + """Arguments to pass to install.""" + return ['--prefix={0}'.format(prefix)] + + def install_lib(self, spec, prefix): + """Install all Python modules (extensions and pure Python).""" + args = self.install_lib_args(spec, prefix) + + self.setup_py('install_lib', *args) + + def install_lib_args(self, spec, prefix): + """Arguments to pass to install_lib.""" + return [] + + def install_headers(self, spec, prefix): + """Install C/C++ header files.""" + args = self.install_headers_args(spec, prefix) + + self.setup_py('install_headers', *args) + + def install_headers_args(self, spec, prefix): + """Arguments to pass to install_headers.""" + return [] + + def install_scripts(self, spec, prefix): + """Install scripts (Python or otherwise).""" + args = self.install_scripts_args(spec, prefix) + + self.setup_py('install_scripts', *args) + + def install_scripts_args(self, spec, prefix): + """Arguments to pass to install_scripts.""" + return [] + + def install_data(self, spec, prefix): + """Install data files.""" + args = self.install_data_args(spec, prefix) + + self.setup_py('install_data', *args) + + def install_data_args(self, spec, prefix): + """Arguments to pass to install_data.""" + return [] + + def sdist(self, spec, prefix): + """Create a source distribution (tarball, zip file, etc.).""" + args = self.sdist_args(spec, prefix) + + self.setup_py('sdist', *args) + + def sdist_args(self, spec, prefix): + """Arguments to pass to sdist.""" + return [] + + def register(self, spec, prefix): + """Register the distribution with the Python package index.""" + args = self.register_args(spec, prefix) + + self.setup_py('register', *args) + + def register_args(self, spec, prefix): + """Arguments to pass to register.""" + return [] + + def bdist(self, spec, prefix): + """Create a built (binary) distribution.""" + args = self.bdist_args(spec, prefix) + + self.setup_py('bdist', *args) + + def bdist_args(self, spec, prefix): + """Arguments to pass to bdist.""" + return [] + + def bdist_dumb(self, spec, prefix): + '''Create a "dumb" built distribution.''' + args = self.bdist_dumb_args(spec, prefix) + + self.setup_py('bdist_dumb', *args) + + def bdist_dumb_args(self, spec, prefix): + """Arguments to pass to bdist_dumb.""" + return [] + + def bdist_rpm(self, spec, prefix): + """Create an RPM distribution.""" + args = self.bdist_rpm(spec, prefix) + + self.setup_py('bdist_rpm', *args) + + def bdist_rpm_args(self, spec, prefix): + """Arguments to pass to bdist_rpm.""" + return [] + + def bdist_wininst(self, spec, prefix): + """Create an executable installer for MS Windows.""" + args = self.bdist_wininst_args(spec, prefix) + + self.setup_py('bdist_wininst', *args) + + def bdist_wininst_args(self, spec, prefix): + """Arguments to pass to bdist_wininst.""" + return [] + + def upload(self, spec, prefix): + """Upload binary package to PyPI.""" + args = self.upload_args(spec, prefix) + + self.setup_py('upload', *args) + + def upload_args(self, spec, prefix): + """Arguments to pass to upload.""" + return [] + + def check(self, spec, prefix): + """Perform some checks on the package.""" + args = self.check_args(spec, prefix) + + self.setup_py('check', *args) + + def check_args(self, spec, prefix): + """Arguments to pass to check.""" + return [] + + # Check that self.prefix is there after installation + PackageBase.sanity_check('install')(PackageBase.sanity_check_prefix) diff --git a/lib/spack/spack/cmd/build.py b/lib/spack/spack/cmd/build.py index 703705a32c..6c0029794f 100644 --- a/lib/spack/spack/cmd/build.py +++ b/lib/spack/spack/cmd/build.py @@ -30,7 +30,8 @@ description = 'Stops at build stage when installing a package, if possible' build_system_to_phase = { CMakePackage: 'build', - AutotoolsPackage: 'build' + AutotoolsPackage: 'build', + PythonPackage: 'build' } diff --git a/lib/spack/spack/cmd/create.py b/lib/spack/spack/cmd/create.py index a488104282..2575229581 100644 --- a/lib/spack/spack/cmd/create.py +++ b/lib/spack/spack/cmd/create.py @@ -194,19 +194,20 @@ class BazelPackageTemplate(PackageTemplate): class PythonPackageTemplate(PackageTemplate): - """Provides appropriate overrides for Python extensions""" + """Provides appropriate overrides for python extensions""" + base_class_name = 'PythonPackage' dependencies = """\ - extends('python') - - # FIXME: Add additional dependencies if required. + # FIXME: Add dependencies if required. # depends_on('py-setuptools', type='build') # depends_on('py-foo', type=('build', 'run'))""" body = """\ - def install(self, spec, prefix): - # FIXME: Add logic to build and install here. - setup_py('install', '--prefix={0}'.format(prefix))""" + def build_args(self): + # FIXME: Add arguments other than --prefix + # FIXME: If not needed delete the function + args = [] + return args""" def __init__(self, name, *args): # If the user provided `--name py-numpy`, don't rename it py-py-numpy diff --git a/lib/spack/spack/directives.py b/lib/spack/spack/directives.py index 72656684e0..58eabb9e3b 100644 --- a/lib/spack/spack/directives.py +++ b/lib/spack/spack/directives.py @@ -289,9 +289,10 @@ def extends(spec, **kwargs): """ def _execute(pkg): - if pkg.extendees: - msg = 'Packages can extend at most one other package.' - raise DirectiveError(msg) + # if pkg.extendees: + # directive = 'extends' + # msg = 'Packages can extend at most one other package.' + # raise DirectiveError(directive, msg) when = kwargs.pop('when', pkg.name) _depends_on(pkg, spec, when=when) @@ -344,8 +345,9 @@ def variant(name, default=False, description=""): def _execute(pkg): if not re.match(spack.spec.identifier_re, name): - msg = 'Invalid variant name in {0}: \'{1}\'' - raise DirectiveError(msg.format(pkg.name, name)) + directive = 'variant' + msg = "Invalid variant name in {0}: '{1}'" + raise DirectiveError(directive, msg.format(pkg.name, name)) pkg.variants[name] = Variant(default, description) return _execute diff --git a/var/spack/repos/builtin/packages/py-3to2/package.py b/var/spack/repos/builtin/packages/py-3to2/package.py index d0b6857aaf..80b95fcbfd 100644 --- a/var/spack/repos/builtin/packages/py-3to2/package.py +++ b/var/spack/repos/builtin/packages/py-3to2/package.py @@ -25,7 +25,7 @@ from spack import * -class Py3to2(Package): +class Py3to2(PythonPackage): """lib3to2 is a set of fixers that are intended to backport code written for Python version 3.x into Python version 2.x.""" @@ -33,8 +33,3 @@ class Py3to2(Package): url = "https://pypi.python.org/packages/source/3/3to2/3to2-1.1.1.zip" version('1.1.1', 'cbeed28e350dbdaef86111ace3052824') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-alabaster/package.py b/var/spack/repos/builtin/packages/py-alabaster/package.py index 24cb5dce22..f2402c9bc6 100644 --- a/var/spack/repos/builtin/packages/py-alabaster/package.py +++ b/var/spack/repos/builtin/packages/py-alabaster/package.py @@ -25,7 +25,7 @@ from spack import * -class PyAlabaster(Package): +class PyAlabaster(PythonPackage): """Alabaster is a visually (c)lean, responsive, configurable theme for the Sphinx documentation system.""" @@ -35,9 +35,4 @@ class PyAlabaster(Package): version('0.7.9', 'b29646a8bbe7aa52830375b7d17b5d7a', url="https://pypi.python.org/packages/71/c3/70da7d8ac18a4f4c502887bd2549e05745fa403e2cd9d06a8a9910a762bc/alabaster-0.7.9.tar.gz") - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-argcomplete/package.py b/var/spack/repos/builtin/packages/py-argcomplete/package.py index fe948f8061..585540f23b 100644 --- a/var/spack/repos/builtin/packages/py-argcomplete/package.py +++ b/var/spack/repos/builtin/packages/py-argcomplete/package.py @@ -25,7 +25,7 @@ from spack import * -class PyArgcomplete(Package): +class PyArgcomplete(PythonPackage): """Bash tab completion for argparse.""" homepage = "https://pypi.python.org/pypi/argcomplete" @@ -34,7 +34,3 @@ class PyArgcomplete(Package): version('1.1.1', '89a3839096c9f991ad33828e72d21abf') depends_on('py-setuptools', type='build') - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-astroid/package.py b/var/spack/repos/builtin/packages/py-astroid/package.py index a42d936f05..f275813d86 100644 --- a/var/spack/repos/builtin/packages/py-astroid/package.py +++ b/var/spack/repos/builtin/packages/py-astroid/package.py @@ -22,11 +22,10 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -from spack import depends_on, extends, version -from spack import Package +from spack import * -class PyAstroid(Package): +class PyAstroid(PythonPackage): homepage = "https://www.astroid.org/" url = "https://github.com/PyCQA/astroid/archive/astroid-1.4.5.tar.gz" @@ -36,10 +35,6 @@ class PyAstroid(Package): version('1.4.2', '677f7965840f375af51b0e86403bee6a') version('1.4.1', 'ed70bfed5e4b25be4292e7fe72da2c02') - extends('python') depends_on('py-logilab-common', type=('build', 'run')) depends_on('py-setuptools', type='build') depends_on('py-six', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-astropy/package.py b/var/spack/repos/builtin/packages/py-astropy/package.py index 193add18ef..8688e0ee7e 100644 --- a/var/spack/repos/builtin/packages/py-astropy/package.py +++ b/var/spack/repos/builtin/packages/py-astropy/package.py @@ -25,7 +25,7 @@ from spack import * -class PyAstropy(Package): +class PyAstropy(PythonPackage): """The Astropy Project is a community effort to develop a single core package for Astronomy in Python and foster interoperability between Python astronomy packages.""" @@ -37,7 +37,6 @@ class PyAstropy(Package): version('1.1.post1', 'b52919f657a37d45cc45f5cb0f58c44d') # Required dependencies - extends('python') depends_on('py-numpy', type=('build', 'run')) # Optional dependencies @@ -55,6 +54,5 @@ class PyAstropy(Package): depends_on('cfitsio') depends_on('expat') - def install(self, spec, prefix): - setup_py('build', '--use-system-cfitsio', '--use-system-expat') - setup_py('install', '--prefix={0}'.format(prefix)) + def build_args(self, spec, prefix): + return ['--use-system-cfitsio', '--use-system-expat'] diff --git a/var/spack/repos/builtin/packages/py-autopep8/package.py b/var/spack/repos/builtin/packages/py-autopep8/package.py index 629a3b515e..c892e2979c 100644 --- a/var/spack/repos/builtin/packages/py-autopep8/package.py +++ b/var/spack/repos/builtin/packages/py-autopep8/package.py @@ -25,7 +25,7 @@ from spack import * -class PyAutopep8(Package): +class PyAutopep8(PythonPackage): """autopep8 automatically formats Python code to conform to the PEP 8 style guide.""" @@ -48,6 +48,3 @@ class PyAutopep8(Package): return url.format('v', version) else: return url.format('ver', version) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-babel/package.py b/var/spack/repos/builtin/packages/py-babel/package.py index 12d7ff84b6..844ceab34e 100644 --- a/var/spack/repos/builtin/packages/py-babel/package.py +++ b/var/spack/repos/builtin/packages/py-babel/package.py @@ -25,7 +25,7 @@ from spack import * -class PyBabel(Package): +class PyBabel(PythonPackage): """Babel is an integrated collection of utilities that assist in internationalizing and localizing Python applications, with an emphasis on web-based applications.""" @@ -36,10 +36,5 @@ class PyBabel(Package): version('2.3.4', 'afa20bc55b0e991833030129ad498f35', url="https://pypi.python.org/packages/6e/96/ba2a2462ed25ca0e651fb7b66e7080f5315f91425a07ea5b34d7c870c114/Babel-2.3.4.tar.gz") - extends('python') - depends_on('py-setuptools', type='build') depends_on('py-pytz', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-backports-abc/package.py b/var/spack/repos/builtin/packages/py-backports-abc/package.py index d39cec83c8..7d062bff6a 100644 --- a/var/spack/repos/builtin/packages/py-backports-abc/package.py +++ b/var/spack/repos/builtin/packages/py-backports-abc/package.py @@ -25,17 +25,12 @@ from spack import * -class PyBackportsAbc(Package): +class PyBackportsAbc(PythonPackage): """Backports_ABC: A backport of recent additions to the 'collections.abc' module.""" homepage = "https://github.com/cython/backports_abc" - # base https://pypi.python.org/pypi/backports_abc/ url = "https://github.com/cython/backports_abc/archive/0.4.tar.gz" version('0.4', 'e4246ae689221c9cbe84369fdb59e8c74d02b298') - extends('python') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-backports-shutil-get-terminal-size/package.py b/var/spack/repos/builtin/packages/py-backports-shutil-get-terminal-size/package.py index 5158fa3ad4..5950faa765 100644 --- a/var/spack/repos/builtin/packages/py-backports-shutil-get-terminal-size/package.py +++ b/var/spack/repos/builtin/packages/py-backports-shutil-get-terminal-size/package.py @@ -25,8 +25,8 @@ from spack import * -class PyBackportsShutilGetTerminalSize(Package): - """A backport of the get_terminal_size function +class PyBackportsShutilGetTerminalSize(PythonPackage): + """A backport of the get_terminal_size function from Python 3.3's shutil.""" homepage = "https://pypi.python.org/pypi/backports.shutil_get_terminal_size" @@ -34,10 +34,5 @@ class PyBackportsShutilGetTerminalSize(Package): version('1.0.0', '03267762480bd86b50580dc19dff3c66') - extends('python') - depends_on('py-setuptools', type='build') depends_on('python@:3.2.999') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-backports-ssl-match-hostname/package.py b/var/spack/repos/builtin/packages/py-backports-ssl-match-hostname/package.py index 13b3a1abd4..bf4679556b 100644 --- a/var/spack/repos/builtin/packages/py-backports-ssl-match-hostname/package.py +++ b/var/spack/repos/builtin/packages/py-backports-ssl-match-hostname/package.py @@ -25,7 +25,7 @@ from spack import * -class PyBackportsSslMatchHostname(Package): +class PyBackportsSslMatchHostname(PythonPackage): """The ssl.match_hostname() function from Python 3.5""" homepage = "https://pypi.python.org/pypi/backports.ssl_match_hostname" @@ -33,9 +33,4 @@ class PyBackportsSslMatchHostname(Package): version('3.5.0.1', 'c03fc5e2c7b3da46b81acf5cbacfe1e6') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-basemap/package.py b/var/spack/repos/builtin/packages/py-basemap/package.py index d69051037b..4a35134e40 100644 --- a/var/spack/repos/builtin/packages/py-basemap/package.py +++ b/var/spack/repos/builtin/packages/py-basemap/package.py @@ -26,7 +26,7 @@ from spack import * import os -class PyBasemap(Package): +class PyBasemap(PythonPackage): """The matplotlib basemap toolkit is a library for plotting 2D data on maps in Python.""" @@ -35,17 +35,18 @@ class PyBasemap(Package): version('1.0.7', '48c0557ced9e2c6e440b28b3caff2de8') - extends('python') depends_on('py-setuptools', type='build') depends_on('py-numpy', type=('build', 'run')) depends_on('py-matplotlib', type=('build', 'run')) depends_on('pil', type=('build', 'run')) - depends_on("geos") + depends_on('geos') - def install(self, spec, prefix): - env['GEOS_DIR'] = spec['geos'].prefix - setup_py('install', '--prefix=%s' % prefix) + def setup_environment(self, spack_env, run_env): + spack_env.set('GEOS_DIR', self.spec['geos'].prefix) + @PythonPackage.sanity_check('install') + def post_install_patch(self): + spec = self.spec # We are not sure if this fix is needed before Python 3.5.2. # If it is needed, this test should be changed. # See: https://github.com/LLNL/spack/pull/1964 diff --git a/var/spack/repos/builtin/packages/py-beautifulsoup4/package.py b/var/spack/repos/builtin/packages/py-beautifulsoup4/package.py index 5f8b636985..3a90d02127 100644 --- a/var/spack/repos/builtin/packages/py-beautifulsoup4/package.py +++ b/var/spack/repos/builtin/packages/py-beautifulsoup4/package.py @@ -25,7 +25,7 @@ from spack import * -class PyBeautifulsoup4(Package): +class PyBeautifulsoup4(PythonPackage): """Beautiful Soup is a Python library for pulling data out of HTML and XML files. It works with your favorite parser to provide idiomatic ways of navigating, searching, and modifying the parse tree.""" @@ -38,9 +38,4 @@ class PyBeautifulsoup4(Package): 'download/4.5/beautifulsoup4-4.5.1.tar.gz') version('4.4.1', '8fbd9a7cac0704645fa20d1419036815') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-biopython/package.py b/var/spack/repos/builtin/packages/py-biopython/package.py index 83ede166d6..3411e244f9 100644 --- a/var/spack/repos/builtin/packages/py-biopython/package.py +++ b/var/spack/repos/builtin/packages/py-biopython/package.py @@ -25,7 +25,7 @@ from spack import * -class PyBiopython(Package): +class PyBiopython(PythonPackage): """A distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. @@ -36,9 +36,5 @@ class PyBiopython(Package): version('1.65', '143e7861ade85c0a8b5e2bbdd1da1f67') - extends('python') depends_on('py-mx', type=('build', 'run')) depends_on('py-numpy', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-bleach/package.py b/var/spack/repos/builtin/packages/py-bleach/package.py new file mode 100644 index 0000000000..4a6d7ed9d2 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-bleach/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyBleach(PythonPackage): + """An easy whitelist-based HTML-sanitizing tool.""" + + homepage = "http://github.com/mozilla/bleach" + url = "https://pypi.python.org/packages/99/00/25a8fce4de102bf6e3cc76bc4ea60685b2fee33bde1b34830c70cacc26a7/bleach-1.5.0.tar.gz" + + version('1.5.0', 'b663300efdf421b3b727b19d7be9c7e7') + + depends_on('python@2.6:2.7,3.2:3.5') + depends_on('py-setuptools', type='build') + depends_on('py-six', type=('build', 'run')) + depends_on('py-html5lib@0.999,0.999999:0.9999999', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-blessings/package.py b/var/spack/repos/builtin/packages/py-blessings/package.py index 700c0ff4b3..b38f34b412 100644 --- a/var/spack/repos/builtin/packages/py-blessings/package.py +++ b/var/spack/repos/builtin/packages/py-blessings/package.py @@ -25,7 +25,7 @@ from spack import * -class PyBlessings(Package): +class PyBlessings(PythonPackage): """A nicer, kinder way to write to the terminal """ homepage = "https://github.com/erikrose/blessings" url = "https://pypi.python.org/packages/source/b/blessings/blessings-1.6.tar.gz" @@ -33,8 +33,3 @@ class PyBlessings(Package): version('1.6', '4f552a8ebcd4982693c92571beb99394') depends_on('py-setuptools', type='build') - - extends("python") - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-bottleneck/package.py b/var/spack/repos/builtin/packages/py-bottleneck/package.py index d2d258105d..a1215ce39e 100644 --- a/var/spack/repos/builtin/packages/py-bottleneck/package.py +++ b/var/spack/repos/builtin/packages/py-bottleneck/package.py @@ -25,15 +25,11 @@ from spack import * -class PyBottleneck(Package): +class PyBottleneck(PythonPackage): """A collection of fast NumPy array functions written in Cython.""" homepage = "https://pypi.python.org/pypi/Bottleneck/1.0.0" url = "https://pypi.python.org/packages/source/B/Bottleneck/Bottleneck-1.0.0.tar.gz" version('1.0.0', '380fa6f275bd24f27e7cf0e0d752f5d2') - extends('python') depends_on('py-numpy', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-cclib/package.py b/var/spack/repos/builtin/packages/py-cclib/package.py index f06a8cbc37..b59376d7b8 100644 --- a/var/spack/repos/builtin/packages/py-cclib/package.py +++ b/var/spack/repos/builtin/packages/py-cclib/package.py @@ -25,18 +25,13 @@ from spack import * -class PyCclib(Package): +class PyCclib(PythonPackage): """Open source library for parsing and interpreting the results of computational chemistry packages""" homepage = "https://cclib.github.io/" - url = "https://github.com/cclib/cclib/releases/download/v1.5/cclib-1.5.tar.gz" - version('1.5', 'c06940101c4796bce82036b13fecb73c') - - extends('python') + version('1.5.post1', '1a50be48e4597b1a6dabe943da82a43c', + url="https://github.com/cclib/cclib/releases/download/v1.5/cclib-1.5.post1.tar.gz") depends_on('py-numpy@1.5:', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-cdo/package.py b/var/spack/repos/builtin/packages/py-cdo/package.py index c74a3f7c33..5eb8f414a8 100644 --- a/var/spack/repos/builtin/packages/py-cdo/package.py +++ b/var/spack/repos/builtin/packages/py-cdo/package.py @@ -25,7 +25,7 @@ from spack import * -class PyCdo(Package): +class PyCdo(PythonPackage): """The cdo package provides an interface to the Climate Data Operators from Python.""" @@ -35,13 +35,8 @@ class PyCdo(Package): version('1.3.2', '4b3686ec1b9b891f166c1c466c6db745', url="https://pypi.python.org/packages/d6/13/908e7c1451e1f5fb68405f341cdcb3196a16952ebfe1f172cb788f864aa9/cdo-1.3.2.tar.gz") - extends('python') - depends_on('cdo') depends_on('py-setuptools', type='build') depends_on('py-scipy', type=('build', 'run')) - depends_on('py-netcdf', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + depends_on('py-netcdf', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-certifi/package.py b/var/spack/repos/builtin/packages/py-certifi/package.py index 996a90df8e..959c0221ed 100644 --- a/var/spack/repos/builtin/packages/py-certifi/package.py +++ b/var/spack/repos/builtin/packages/py-certifi/package.py @@ -25,18 +25,13 @@ from spack import * -class PyCertifi(Package): +class PyCertifi(PythonPackage): """Certifi: A carefully curated collection of Root Certificates for validating the trustworthiness of SSL certificates while verifying the identity of TLS hosts.""" homepage = "https://github.com/certifi/python-certifi" - # base https://pypi.python.org/pypi/certifi/ url = "https://github.com/certifi/python-certifi/archive/2016.02.28.tar.gz" version('2016.02.28', '5ccfc23bd5e931863f0b01ef3e9d2dbd3bef0e1b') - extends('python') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-cffi/package.py b/var/spack/repos/builtin/packages/py-cffi/package.py index f2f7646687..c0fbae639b 100644 --- a/var/spack/repos/builtin/packages/py-cffi/package.py +++ b/var/spack/repos/builtin/packages/py-cffi/package.py @@ -22,12 +22,10 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -import os - from spack import * -class PyCffi(Package): +class PyCffi(PythonPackage): """Foreign Function Interface for Python calling C code""" homepage = "http://cffi.readthedocs.org/en/latest/" # base https://pypi.python.org/pypi/cffi @@ -35,18 +33,15 @@ class PyCffi(Package): version('1.1.2', 'ca6e6c45b45caa87aee9adc7c796eaea') - extends('python') depends_on('py-setuptools', type='build') depends_on('py-pycparser', type=('build', 'run')) depends_on('libffi') - def install(self, spec, prefix): + def setup_environment(self, spack_env, run_env): # This sets the compiler (and flags) that distutils will use # to create the final shared library. It will use the # compiler specified by the environment variable 'CC' for all # other compilation. We are setting the 'LDSHARED" to the # spack compiler wrapper plus a few extra flags necessary for # building the shared library. - os.environ['LDSHARED'] = "{0} -shared -pthread".format(spack_cc) - - setup_py('install', '--prefix=%s' % prefix) + spack_env.set('LDSHARED', "{0} -shared -pthread".format(spack_cc)) diff --git a/var/spack/repos/builtin/packages/py-configparser/package.py b/var/spack/repos/builtin/packages/py-configparser/package.py index 6885d6bd93..c9ba7ac15c 100644 --- a/var/spack/repos/builtin/packages/py-configparser/package.py +++ b/var/spack/repos/builtin/packages/py-configparser/package.py @@ -25,7 +25,7 @@ from spack import * -class PyConfigparser(Package): +class PyConfigparser(PythonPackage): """This library brings the updated configparser from Python 3.5 to Python 2.6-3.5.""" @@ -35,12 +35,10 @@ class PyConfigparser(Package): version('3.5.0', 'cfdd915a5b7a6c09917a64a573140538', url="https://pypi.python.org/packages/7c/69/c2ce7e91c89dc073eb1aa74c0621c3eefbffe8216b3f9af9d3885265c01c/configparser-3.5.0.tar.gz") - extends('python') depends_on('python@2.6:2.7,3.4:') - depends_on('py-ordereddict', when='^python@2.6:2.6.999', type=('build', 'run')) + # This dependency breaks concretization + # See https://github.com/LLNL/spack/issues/2793 + # depends_on('py-ordereddict', when='^python@2.6:2.6.999', type=('build', 'run')) # noqa depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-coverage/package.py b/var/spack/repos/builtin/packages/py-coverage/package.py index 8cd8440b7e..dc8fc08e24 100644 --- a/var/spack/repos/builtin/packages/py-coverage/package.py +++ b/var/spack/repos/builtin/packages/py-coverage/package.py @@ -25,7 +25,7 @@ from spack import * -class PyCoverage(Package): +class PyCoverage(PythonPackage): """ Testing coverage checker for python """ homepage = "http://nedbatchelder.com/code/coverage/" @@ -34,8 +34,3 @@ class PyCoverage(Package): version('4.0a6', '1bb4058062646148965bef0796b61efc') depends_on('py-setuptools', type='build') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-csvkit/package.py b/var/spack/repos/builtin/packages/py-csvkit/package.py index ceb220eef7..5bcda9f449 100644 --- a/var/spack/repos/builtin/packages/py-csvkit/package.py +++ b/var/spack/repos/builtin/packages/py-csvkit/package.py @@ -25,7 +25,7 @@ from spack import * -class PyCsvkit(Package): +class PyCsvkit(PythonPackage): """A library of utilities for working with CSV, the king of tabular file formats""" @@ -34,14 +34,9 @@ class PyCsvkit(Package): version('0.9.1', '48d78920019d18846933ee969502fff6') - extends('python') - depends_on('py-dateutil', type=('build', 'run')) depends_on('py-dbf', type=('build', 'run')) depends_on('py-xlrd', type=('build', 'run')) depends_on('py-sqlalchemy', type=('build', 'run')) depends_on('py-six', type=('build', 'run')) depends_on('py-openpyxl', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-cycler/package.py b/var/spack/repos/builtin/packages/py-cycler/package.py index dff307cddd..f2b2a15018 100644 --- a/var/spack/repos/builtin/packages/py-cycler/package.py +++ b/var/spack/repos/builtin/packages/py-cycler/package.py @@ -25,7 +25,7 @@ from spack import * -class PyCycler(Package): +class PyCycler(PythonPackage): """Composable style cycles.""" homepage = "http://matplotlib.org/cycler/" @@ -33,10 +33,5 @@ class PyCycler(Package): version('0.10.0', '83dd0df7810e838b59e4dd9fa6e2d198') - extends('python') - depends_on('py-setuptools', type='build') depends_on('py-six', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-cython/package.py b/var/spack/repos/builtin/packages/py-cython/package.py index 55a4ef9ced..c84728cf3e 100644 --- a/var/spack/repos/builtin/packages/py-cython/package.py +++ b/var/spack/repos/builtin/packages/py-cython/package.py @@ -25,21 +25,16 @@ from spack import * -class PyCython(Package): +class PyCython(PythonPackage): """The Cython compiler for writing C extensions for the Python language.""" homepage = "https://pypi.python.org/pypi/cython" url = "https://pypi.io/packages/source/c/cython/Cython-0.25.2.tar.gz" version('0.25.2', '642c81285e1bb833b14ab3f439964086') - + version('0.23.5', '66b62989a67c55af016c916da36e7514') version('0.23.4', '157df1f69bcec6b56fd97e0f2e057f6e') # These versions contain illegal Python3 code... version('0.22', '1ae25add4ef7b63ee9b4af697300d6b6') version('0.21.2', 'd21adb870c75680dc857cd05d41046a4') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-dask/package.py b/var/spack/repos/builtin/packages/py-dask/package.py index c72046b627..4113c2ac0b 100644 --- a/var/spack/repos/builtin/packages/py-dask/package.py +++ b/var/spack/repos/builtin/packages/py-dask/package.py @@ -25,16 +25,11 @@ from spack import * -class PyDask(Package): +class PyDask(PythonPackage): """Minimal task scheduling abstraction""" homepage = "https://github.com/dask/dask/" url = "https://pypi.python.org/packages/source/d/dask/dask-0.8.1.tar.gz" version('0.8.1', '5dd8e3a3823b3bc62c9a6d192e2cb5b4') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-dateutil/package.py b/var/spack/repos/builtin/packages/py-dateutil/package.py index c9e77b3b08..3ab5ad029c 100644 --- a/var/spack/repos/builtin/packages/py-dateutil/package.py +++ b/var/spack/repos/builtin/packages/py-dateutil/package.py @@ -25,7 +25,7 @@ from spack import * -class PyDateutil(Package): +class PyDateutil(PythonPackage): """Extensions to the standard Python datetime module.""" homepage = "https://pypi.python.org/pypi/dateutil" url = "https://pypi.python.org/packages/source/p/python-dateutil/python-dateutil-2.4.0.tar.gz" @@ -34,9 +34,5 @@ class PyDateutil(Package): version('2.4.2', '4ef68e1c485b09e9f034e10473e5add2') version('2.5.2', 'eafe168e8f404bf384514f5116eedbb6') - extends('python') depends_on('py-setuptools', type='build') depends_on('py-six', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-dbf/package.py b/var/spack/repos/builtin/packages/py-dbf/package.py index eff893cc82..56403405e8 100644 --- a/var/spack/repos/builtin/packages/py-dbf/package.py +++ b/var/spack/repos/builtin/packages/py-dbf/package.py @@ -25,7 +25,7 @@ from spack import * -class PyDbf(Package): +class PyDbf(PythonPackage): """Pure python package for reading/writing dBase, FoxPro, and Visual FoxPro .dbf files (including memos)""" @@ -33,8 +33,3 @@ class PyDbf(Package): url = "https://pypi.python.org/packages/source/d/dbf/dbf-0.96.005.tar.gz" version('0.96.005', 'bce1a1ed8b454a30606e7e18dd2f8277') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-decorator/package.py b/var/spack/repos/builtin/packages/py-decorator/package.py index 30f764edc3..e5734866ec 100644 --- a/var/spack/repos/builtin/packages/py-decorator/package.py +++ b/var/spack/repos/builtin/packages/py-decorator/package.py @@ -25,7 +25,7 @@ from spack import * -class PyDecorator(Package): +class PyDecorator(PythonPackage): """The aim of the decorator module it to simplify the usage of decorators for the average programmer, and to popularize decorators by showing various non-trivial examples.""" @@ -34,9 +34,4 @@ class PyDecorator(Package): version('4.0.9', 'f12c5651ccd707e12a0abaa4f76cd69a') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-docutils/package.py b/var/spack/repos/builtin/packages/py-docutils/package.py index 114131df90..00741284df 100644 --- a/var/spack/repos/builtin/packages/py-docutils/package.py +++ b/var/spack/repos/builtin/packages/py-docutils/package.py @@ -25,7 +25,7 @@ from spack import * -class PyDocutils(Package): +class PyDocutils(PythonPackage): """Docutils is an open-source text processing system for processing plaintext documentation into useful formats, such as HTML, LaTeX, man-pages, open-document or XML. It includes reStructuredText, the @@ -35,9 +35,6 @@ class PyDocutils(Package): homepage = "http://docutils.sourceforge.net/" url = "https://pypi.python.org/packages/source/d/docutils/docutils-0.12.tar.gz" - version('0.12', '4622263b62c5c771c03502afa3157768') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + version('0.13.1', 'ea4a893c633c788be9b8078b6b305d53', + url="https://pypi.python.org/packages/05/25/7b5484aca5d46915493f1fd4ecb63c38c333bd32aa9ad6e19da8d08895ae/docutils-0.13.1.tar.gz") + version('0.12', '4622263b62c5c771c03502afa3157768') diff --git a/var/spack/repos/builtin/packages/py-emcee/package.py b/var/spack/repos/builtin/packages/py-emcee/package.py index d3627b32c5..6419a9c40e 100644 --- a/var/spack/repos/builtin/packages/py-emcee/package.py +++ b/var/spack/repos/builtin/packages/py-emcee/package.py @@ -25,7 +25,7 @@ from spack import * -class PyEmcee(Package): +class PyEmcee(PythonPackage): """emcee is an MIT licensed pure-Python implementation of Goodman & Weare's Affine Invariant Markov chain Monte Carlo (MCMC) Ensemble sampler.""" @@ -34,8 +34,4 @@ class PyEmcee(Package): version('2.1.0', 'c6b6fad05c824d40671d4a4fc58dfff7') - extends('python') depends_on('py-numpy', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-enum34/package.py b/var/spack/repos/builtin/packages/py-enum34/package.py index 584572b47d..cc111ce092 100644 --- a/var/spack/repos/builtin/packages/py-enum34/package.py +++ b/var/spack/repos/builtin/packages/py-enum34/package.py @@ -25,7 +25,7 @@ from spack import * -class PyEnum34(Package): +class PyEnum34(PythonPackage): """Python 3.4 Enum backported to 3.3, 3.2, 3.1, 2.7, 2.6, 2.5, and 2.4.""" homepage = "https://pypi.python.org/pypi/enum34" @@ -34,12 +34,10 @@ class PyEnum34(Package): version('1.1.6', '5f13a0841a61f7fc295c514490d120d0', url="https://pypi.python.org/packages/bf/3e/31d502c25302814a7c2f1d3959d2a3b3f78e509002ba91aea64993936876/enum34-1.1.6.tar.gz") - extends('python') depends_on('python@2.4:2.8,3.3:') - depends_on('py-ordereddict', when='^python@:2.6.999', type=('build', 'run')) + # This dependency breaks concretization + # See https://github.com/LLNL/spack/issues/2793 + # depends_on('py-ordereddict', when='^python@:2.6.999', type=('build', 'run')) # noqa depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-epydoc/package.py b/var/spack/repos/builtin/packages/py-epydoc/package.py index ed490cb396..e13d431f91 100644 --- a/var/spack/repos/builtin/packages/py-epydoc/package.py +++ b/var/spack/repos/builtin/packages/py-epydoc/package.py @@ -25,15 +25,10 @@ from spack import * -class PyEpydoc(Package): +class PyEpydoc(PythonPackage): """Epydoc is a tool for generating API documentation documentation for Python modules, based on their docstrings.""" homepage = "https://pypi.python.org/pypi/epydoc" url = "https://pypi.python.org/packages/source/e/epydoc/epydoc-3.0.1.tar.gz" version('3.0.1', '36407974bd5da2af00bf90ca27feeb44') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-flake8/package.py b/var/spack/repos/builtin/packages/py-flake8/package.py index 4515f68e0a..17d7cea343 100644 --- a/var/spack/repos/builtin/packages/py-flake8/package.py +++ b/var/spack/repos/builtin/packages/py-flake8/package.py @@ -25,7 +25,7 @@ from spack import * -class PyFlake8(Package): +class PyFlake8(PythonPackage): """Flake8 is a wrapper around PyFlakes, pep8 and Ned Batchelder's McCabe script.""" @@ -43,7 +43,7 @@ class PyFlake8(Package): depends_on('py-setuptools', type=('build', 'run')) # pyflakes >= 0.8.1, != 1.2.0, != 1.2.1, != 1.2.2, < 1.3.0 - depends_on('py-pyflakes@0.8.1:1.1.0,1.2.3:1.2.3', when='@3.0.4', type=('build', 'run')) # noqa + depends_on('py-pyflakes@0.8.1:1.1.0,1.2.3:1.2.3', when='@3.0.4', type=('build', 'run')) # pyflakes >= 0.8.1, < 1.1 depends_on('py-pyflakes@0.8.1:1.0.0', when='@2.5.4', type=('build', 'run')) @@ -57,11 +57,12 @@ class PyFlake8(Package): # mccabe >= 0.2.1, < 0.5 depends_on('py-mccabe@0.2.1:0.4.0', when='@2.5.4', type=('build', 'run')) - depends_on('py-configparser', when='^python@:3.3.999', type=('build', 'run')) - depends_on('py-enum34', when='^python@:3.1.999', type=('build', 'run')) + # These dependencies breaks concretization + # See https://github.com/LLNL/spack/issues/2793 + # depends_on('py-configparser', when='^python@:3.3.999', type=('build', 'run')) # noqa + # depends_on('py-enum34', when='^python@:3.1.999', type=('build', 'run')) + depends_on('py-configparser', type=('build', 'run')) + depends_on('py-enum34', type=('build', 'run')) # TODO: Add test dependencies # depends_on('py-nose', type='test') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-funcsigs/package.py b/var/spack/repos/builtin/packages/py-funcsigs/package.py index b82a37cae9..ea8b71f25f 100644 --- a/var/spack/repos/builtin/packages/py-funcsigs/package.py +++ b/var/spack/repos/builtin/packages/py-funcsigs/package.py @@ -25,16 +25,11 @@ from spack import * -class PyFuncsigs(Package): +class PyFuncsigs(PythonPackage): """Python function signatures from PEP362 for Python 2.6, 2.7 and 3.2.""" homepage = "https://pypi.python.org/pypi/funcsigs" url = "https://pypi.python.org/packages/source/f/funcsigs/funcsigs-0.4.tar.gz" version('0.4', 'fb1d031f284233e09701f6db1281c2a5') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-functools32/package.py b/var/spack/repos/builtin/packages/py-functools32/package.py index dc4e49d278..f2fb0df555 100644 --- a/var/spack/repos/builtin/packages/py-functools32/package.py +++ b/var/spack/repos/builtin/packages/py-functools32/package.py @@ -25,17 +25,11 @@ from spack import * -class PyFunctools32(Package): +class PyFunctools32(PythonPackage): """Backport of the functools module from Python 3.2.3 for use on 2.7 and PyPy.""" homepage = "https://github.com/MiCHiLU/python-functools32" - # base https://pypi.python.org/pypi/functools32 url = "https://pypi.python.org/packages/source/f/functools32/functools32-3.2.3-2.tar.gz" version('3.2.3-2', '09f24ffd9af9f6cd0f63cb9f4e23d4b2') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-futures/package.py b/var/spack/repos/builtin/packages/py-futures/package.py index 20bf4c7dae..c6c1d8134f 100644 --- a/var/spack/repos/builtin/packages/py-futures/package.py +++ b/var/spack/repos/builtin/packages/py-futures/package.py @@ -25,7 +25,7 @@ from spack import * -class PyFutures(Package): +class PyFutures(PythonPackage): """Backport of the concurrent.futures package from Python 3.2""" homepage = "https://pypi.python.org/pypi/futures" @@ -33,9 +33,4 @@ class PyFutures(Package): version('3.0.5', 'ced2c365e518242512d7a398b515ff95') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-genders/package.py b/var/spack/repos/builtin/packages/py-genders/package.py index f919a7e6c2..2123f4eb3f 100644 --- a/var/spack/repos/builtin/packages/py-genders/package.py +++ b/var/spack/repos/builtin/packages/py-genders/package.py @@ -36,6 +36,9 @@ class PyGenders(Package): url='https://github.com/chaos/genders/releases/download/genders-1-22-1/genders-1.22.tar.gz') extends('python') + # FIXME: Missing a dependency on genders + # #include <genders.h> + def install(self, spec, prefix): configure("--prefix=%s" % prefix) make(parallel=False) diff --git a/var/spack/repos/builtin/packages/py-genshi/package.py b/var/spack/repos/builtin/packages/py-genshi/package.py index e7eb7bebdd..462dbfe802 100644 --- a/var/spack/repos/builtin/packages/py-genshi/package.py +++ b/var/spack/repos/builtin/packages/py-genshi/package.py @@ -22,11 +22,10 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -from spack import version, extends, depends_on -from spack import Package +from spack import * -class PyGenshi(Package): +class PyGenshi(PythonPackage): """Python toolkit for generation of output for the web""" homepage = "https://genshi.edgewall.org/" url = "http://ftp.edgewall.com/pub/genshi/Genshi-0.7.tar.gz" @@ -35,8 +34,4 @@ class PyGenshi(Package): version('0.6.1', '372c368c8931110b0a521fa6091742d7') version('0.6', '604e8b23b4697655d36a69c2d8ef7187') - extends("python") depends_on("py-setuptools", type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-gnuplot/package.py b/var/spack/repos/builtin/packages/py-gnuplot/package.py index f7b88d00fe..a23aa2585f 100644 --- a/var/spack/repos/builtin/packages/py-gnuplot/package.py +++ b/var/spack/repos/builtin/packages/py-gnuplot/package.py @@ -25,7 +25,7 @@ from spack import * -class PyGnuplot(Package): +class PyGnuplot(PythonPackage): """Gnuplot.py is a Python package that allows you to create graphs from within Python using the gnuplot plotting program.""" homepage = "http://gnuplot-py.sourceforge.net/" @@ -33,8 +33,4 @@ class PyGnuplot(Package): version('1.8', 'abd6f571e7aec68ae7db90a5217cd5b1') - extends('python') depends_on('py-numpy', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-h5py/package.py b/var/spack/repos/builtin/packages/py-h5py/package.py index dffd2463d3..666905e5c0 100644 --- a/var/spack/repos/builtin/packages/py-h5py/package.py +++ b/var/spack/repos/builtin/packages/py-h5py/package.py @@ -25,7 +25,7 @@ from spack import * -class PyH5py(Package): +class PyH5py(PythonPackage): """The h5py package provides both a high- and low-level interface to the HDF5 library from Python.""" @@ -38,8 +38,6 @@ class PyH5py(Package): variant('mpi', default=True, description='Build with MPI support') - extends('python') - # Build dependencies depends_on('py-cython@0.19:', type='build') depends_on('pkg-config', type='build') @@ -55,11 +53,11 @@ class PyH5py(Package): # Runtime dependencies depends_on('py-six', type=('build', 'run')) - def install(self, spec, prefix): - setup_py('configure', '--hdf5={0}'.format(spec['hdf5'].prefix)) + phases = ['configure', 'install'] + + def configure(self, spec, prefix): + self.setup_py('configure', '--hdf5={0}'.format(spec['hdf5'].prefix)) if '+mpi' in spec: env['CC'] = spec['mpi'].mpicc - setup_py('configure', '--mpi') - - setup_py('install', '--prefix={0}'.format(prefix)) + self.setup_py('configure', '--mpi') diff --git a/var/spack/repos/builtin/packages/py-html5lib/package.py b/var/spack/repos/builtin/packages/py-html5lib/package.py new file mode 100644 index 0000000000..1757b44297 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-html5lib/package.py @@ -0,0 +1,37 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyHtml5lib(PythonPackage): + """HTML parser based on the WHATWG HTML specification.""" + + homepage = "https://github.com/html5lib/html5lib-python" + url = "https://pypi.python.org/packages/ae/ae/bcb60402c60932b32dfaf19bb53870b29eda2cd17551ba5639219fb5ebf9/html5lib-0.9999999.tar.gz" + + version('0.9999999', 'ef43cb05e9e799f25d65d1135838a96f') + + depends_on('python@2.6:2.7,3.2:3.4') + depends_on('py-six', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-imagesize/package.py b/var/spack/repos/builtin/packages/py-imagesize/package.py index 941e64610e..a2d08f6502 100644 --- a/var/spack/repos/builtin/packages/py-imagesize/package.py +++ b/var/spack/repos/builtin/packages/py-imagesize/package.py @@ -25,7 +25,7 @@ from spack import * -class PyImagesize(Package): +class PyImagesize(PythonPackage): """Parses image file headers and returns image size. Supports PNG, JPEG, JPEG2000, and GIF image file formats.""" @@ -35,9 +35,4 @@ class PyImagesize(Package): version('0.7.1', '976148283286a6ba5f69b0f81aef8052', url="https://pypi.python.org/packages/53/72/6c6f1e787d9cab2cc733cf042f125abec07209a58308831c9f292504e826/imagesize-0.7.1.tar.gz") - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-iminuit/package.py b/var/spack/repos/builtin/packages/py-iminuit/package.py index 3162b41316..0b93a0f2b8 100644 --- a/var/spack/repos/builtin/packages/py-iminuit/package.py +++ b/var/spack/repos/builtin/packages/py-iminuit/package.py @@ -25,7 +25,7 @@ from spack import * -class PyIminuit(Package): +class PyIminuit(PythonPackage): """Interactive IPython-Friendly Minimizer based on SEAL Minuit2.""" homepage = "https://pypi.python.org/pypi/iminuit" @@ -34,13 +34,9 @@ class PyIminuit(Package): version('1.2', '4701ec472cae42015e26251703e6e984') # Required dependencies - extends('python') depends_on('py-setuptools', type='build') # Optional dependencies depends_on('py-numpy', type=('build', 'run')) depends_on('py-matplotlib', type=('build', 'run')) depends_on('py-cython', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-ipykernel/package.py b/var/spack/repos/builtin/packages/py-ipykernel/package.py index d68cfa2ae4..0303a8e43c 100644 --- a/var/spack/repos/builtin/packages/py-ipykernel/package.py +++ b/var/spack/repos/builtin/packages/py-ipykernel/package.py @@ -25,7 +25,7 @@ from spack import * -class PyIpykernel(Package): +class PyIpykernel(PythonPackage): """IPython Kernel for Jupyter""" homepage = "https://pypi.python.org/pypi/ipykernel" @@ -42,15 +42,10 @@ class PyIpykernel(Package): version('4.1.1', '51376850c46fb006e1f8d1cd353507c5') version('4.1.0', '638a43e4f8a15872f749090c3f0827b6') - extends('python') - depends_on('python@2.7:2.7.999,3.3:') depends_on('py-setuptools', type='build') - depends_on('py-traitlets@4.1.0:') - depends_on('py-tornado@4.0:') - depends_on('py-ipython@4.0:') - depends_on('py-jupyter-client') - depends_on('py-pexpect') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + depends_on('py-traitlets@4.1.0:', type=('build', 'run')) + depends_on('py-tornado@4.0:', type=('build', 'run')) + depends_on('py-ipython@4.0:', type=('build', 'run')) + depends_on('py-jupyter-client', type=('build', 'run')) + depends_on('py-pexpect', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-ipython-genutils/package.py b/var/spack/repos/builtin/packages/py-ipython-genutils/package.py index 75b20e08e9..66e8a02130 100644 --- a/var/spack/repos/builtin/packages/py-ipython-genutils/package.py +++ b/var/spack/repos/builtin/packages/py-ipython-genutils/package.py @@ -25,7 +25,7 @@ from spack import * -class PyIpythonGenutils(Package): +class PyIpythonGenutils(PythonPackage): """Vestigial utilities from IPython""" homepage = "https://pypi.python.org/pypi/ipython_genutils" @@ -33,10 +33,5 @@ class PyIpythonGenutils(Package): version('0.1.0', '9a8afbe0978adbcbfcb3b35b2d015a56') - extends('python') - depends_on('py-setuptools', type='build') depends_on('python@2.7:2.7.999,3.3:') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-ipython/package.py b/var/spack/repos/builtin/packages/py-ipython/package.py index b8ad5bf03a..277e090faa 100644 --- a/var/spack/repos/builtin/packages/py-ipython/package.py +++ b/var/spack/repos/builtin/packages/py-ipython/package.py @@ -25,7 +25,7 @@ from spack import * -class PyIpython(Package): +class PyIpython(PythonPackage): """IPython provides a rich toolkit to help you make the most out of using Python interactively.""" homepage = "https://pypi.python.org/pypi/ipython" @@ -35,13 +35,15 @@ class PyIpython(Package): version('3.1.0', 'a749d90c16068687b0ec45a27e72ef8f') version('2.3.1', '2b7085525dac11190bfb45bb8ec8dcbf') - extends('python') depends_on('py-pygments', type=('build', 'run')) depends_on('py-setuptools', type=('build', 'run')) - depends_on('py-backports-shutil-get-terminal-size', when="^python@:3.2.999") - depends_on('py-pathlib2', when="^python@:3.3.999") - depends_on('py-pickleshare') - depends_on('py-simplegeneric') - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) + # These dependencies breaks concretization + # See https://github.com/LLNL/spack/issues/2793 + # depends_on('py-backports-shutil-get-terminal-size', when="^python@:3.2.999") # noqa + # depends_on('py-pathlib2', when="^python@:3.3.999") + depends_on('py-backports-shutil-get-terminal-size', type=('build', 'run')) + depends_on('py-pathlib2', type=('build', 'run')) + + depends_on('py-pickleshare', type=('build', 'run')) + depends_on('py-simplegeneric', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-ipywidgets/package.py b/var/spack/repos/builtin/packages/py-ipywidgets/package.py index c9b2e9c168..eafee8e084 100644 --- a/var/spack/repos/builtin/packages/py-ipywidgets/package.py +++ b/var/spack/repos/builtin/packages/py-ipywidgets/package.py @@ -25,7 +25,7 @@ from spack import * -class PyIpywidgets(Package): +class PyIpywidgets(PythonPackage): """IPython widgets for the Jupyter Notebook""" homepage = "https://github.com/ipython/ipywidgets" @@ -33,13 +33,8 @@ class PyIpywidgets(Package): version('5.2.2', '112f3daa4aa0f42f8dda831cea3649c8') - extends('python') - depends_on('py-setuptools', type='build') depends_on('python@2.7:2.7.999,3.3:') - depends_on('py-ipython@4.0.0:') - depends_on('py-ipykernel@4.2.2:') - depends_on('py-traitlets@4.2.1:') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + depends_on('py-ipython@4.0.0:', type=('build', 'run')) + depends_on('py-ipykernel@4.2.2:', type=('build', 'run')) + depends_on('py-traitlets@4.2.1:', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-jdcal/package.py b/var/spack/repos/builtin/packages/py-jdcal/package.py index 60ee91c9b6..964db1448f 100644 --- a/var/spack/repos/builtin/packages/py-jdcal/package.py +++ b/var/spack/repos/builtin/packages/py-jdcal/package.py @@ -25,15 +25,10 @@ from spack import * -class PyJdcal(Package): +class PyJdcal(PythonPackage): """Julian dates from proleptic Gregorian and Julian calendars""" homepage = 'http://github.com/phn/jdcal' url = "https://pypi.python.org/packages/source/j/jdcal/jdcal-1.2.tar.gz" version('1.2', 'ab8d5ba300fd1eb01514f363d19b1eb9') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-jinja2/package.py b/var/spack/repos/builtin/packages/py-jinja2/package.py index d9191952ee..eafe8c252b 100644 --- a/var/spack/repos/builtin/packages/py-jinja2/package.py +++ b/var/spack/repos/builtin/packages/py-jinja2/package.py @@ -25,7 +25,7 @@ from spack import * -class PyJinja2(Package): +class PyJinja2(PythonPackage): """Jinja2 is a template engine written in pure Python. It provides a Django inspired non-XML syntax but supports inline expressions and an optional sandboxed environment.""" @@ -39,11 +39,6 @@ class PyJinja2(Package): version('2.7.1', '282aed153e69f970d6e76f78ed9d027a') version('2.7', 'c2fb12cbbb523c57d3d15bfe4dc0e8fe') - extends('python') - depends_on('py-setuptools', type='build') depends_on('py-markupsafe', type=('build', 'run')) depends_on('py-babel@0.8:', type=('build', 'run')) # optional, required for i18n - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-jsonschema/package.py b/var/spack/repos/builtin/packages/py-jsonschema/package.py index d41ee439db..b1a0ac6606 100644 --- a/var/spack/repos/builtin/packages/py-jsonschema/package.py +++ b/var/spack/repos/builtin/packages/py-jsonschema/package.py @@ -25,19 +25,18 @@ from spack import * -class PyJsonschema(Package): +class PyJsonschema(PythonPackage): """Jsonschema: An(other) implementation of JSON Schema for Python.""" homepage = "http://github.com/Julian/jsonschema" - # base https://pypi.python.org/pypi/jsonschema url = "https://pypi.python.org/packages/source/j/jsonschema/jsonschema-2.5.1.tar.gz" version('2.5.1', '374e848fdb69a3ce8b7e778b47c30640') - extends('python') depends_on('py-setuptools', type='build') - depends_on('py-vcversioner') - depends_on('py-functools32', when="^python@2.7") + depends_on('py-vcversioner', type=('build', 'run')) - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + # This dependency breaks concretization + # See https://github.com/LLNL/spack/issues/2793 + # depends_on('py-functools32', when="^python@2.7", type=('build', 'run')) + depends_on('py-functools32', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-jupyter-client/package.py b/var/spack/repos/builtin/packages/py-jupyter-client/package.py index c8268c8aa2..b0c7b06362 100644 --- a/var/spack/repos/builtin/packages/py-jupyter-client/package.py +++ b/var/spack/repos/builtin/packages/py-jupyter-client/package.py @@ -25,7 +25,7 @@ from spack import * -class PyJupyterClient(Package): +class PyJupyterClient(PythonPackage): """Jupyter protocol client APIs""" homepage = "https://github.com/jupyter/jupyter_client" @@ -40,13 +40,8 @@ class PyJupyterClient(Package): version('4.1.0', 'cf42048b889c8434fbb5813a9eec1d34') version('4.0.0', '00fa63c67cb3adf359d09dc4d803aff5') - extends('python') - depends_on('py-setuptools', type='build') depends_on('python@2.7:2.7.999,3.3:') - depends_on('py-traitlets') - depends_on('py-jupyter-core') - depends_on('py-zmq@13:') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + depends_on('py-traitlets', type=('build', 'run')) + depends_on('py-jupyter-core', type=('build', 'run')) + depends_on('py-zmq@13:', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-jupyter-console/package.py b/var/spack/repos/builtin/packages/py-jupyter-console/package.py index 1cc432e2e0..a5f3e53298 100644 --- a/var/spack/repos/builtin/packages/py-jupyter-console/package.py +++ b/var/spack/repos/builtin/packages/py-jupyter-console/package.py @@ -25,7 +25,7 @@ from spack import * -class PyJupyterConsole(Package): +class PyJupyterConsole(PythonPackage): """Jupyter Terminal Console""" homepage = "https://github.com/jupyter/jupyter_console" @@ -37,15 +37,10 @@ class PyJupyterConsole(Package): version('4.0.3', '0e928ea261e7f8154698cf69ed4f2459') version('4.0.2', 'f2e174938c91136549b908bd39fa5d59') - extends('python') - depends_on('py-setuptools', type='build') depends_on('python@2.7:2.7.999,3.3:') - depends_on('py-jupyter-client') - depends_on('py-ipython') - depends_on('py-ipykernel') - depends_on('py-pygments') - depends_on('py-prompt-toolkit@1.0.0:1.999.999') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + depends_on('py-jupyter-client', type=('build', 'run')) + depends_on('py-ipython', type=('build', 'run')) + depends_on('py-ipykernel', type=('build', 'run')) + depends_on('py-pygments', type=('build', 'run')) + depends_on('py-prompt-toolkit@1.0.0:1.999.999', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-jupyter-core/package.py b/var/spack/repos/builtin/packages/py-jupyter-core/package.py index ae4f192437..f650a91bb9 100644 --- a/var/spack/repos/builtin/packages/py-jupyter-core/package.py +++ b/var/spack/repos/builtin/packages/py-jupyter-core/package.py @@ -25,7 +25,7 @@ from spack import * -class PyJupyterCore(Package): +class PyJupyterCore(PythonPackage): """Core Jupyter functionality""" homepage = "http://jupyter-core.readthedocs.io/" @@ -40,13 +40,8 @@ class PyJupyterCore(Package): version('4.0.3', 'f2608f6e92f992ec8e37646b52c922a6') version('4.0.2', 'ae0d0197c4febf43c050a97ac6277263') version('4.0.1', 'f849136b2badaaba2a8a3b397bf04639') - version('4.0' , 'b6b37cb4f40bd0fcd20433cb2cc7a4c1') - - extends('python') + version('4.0', 'b6b37cb4f40bd0fcd20433cb2cc7a4c1') depends_on('py-setuptools', type='build') depends_on('python@2.7:2.7.999,3.3:') - depends_on('py-traitlets') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + depends_on('py-traitlets', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-jupyter-notebook/package.py b/var/spack/repos/builtin/packages/py-jupyter-notebook/package.py index c9eb51d2d4..4c0d12b245 100644 --- a/var/spack/repos/builtin/packages/py-jupyter-notebook/package.py +++ b/var/spack/repos/builtin/packages/py-jupyter-notebook/package.py @@ -25,7 +25,7 @@ from spack import * -class PyJupyterNotebook(Package): +class PyJupyterNotebook(PythonPackage): """Jupyter Interactive Notebook""" homepage = "https://github.com/jupyter/notebook" @@ -44,23 +44,18 @@ class PyJupyterNotebook(Package): variant('terminal', default=False, description="Enable terminal functionality") - extends('python') - depends_on('py-setuptools', type='build') depends_on('python@2.7:2.7.999,3.3:') depends_on('npm', type='build') - depends_on('py-jinja2') - depends_on('py-tornado@4:') - depends_on('py-ipython-genutils') - depends_on('py-traitlets') - depends_on('py-jupyter-core') - depends_on('py-jupyter-client') - depends_on('py-jupyter-console') - depends_on('py-nbformat') - depends_on('py-nbconvert') - depends_on('py-ipykernel') - depends_on('py-terminado@0.3.3:', when="+terminal") - depends_on('py-ipywidgets', when="+terminal") - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + depends_on('py-jinja2', type=('build', 'run')) + depends_on('py-tornado@4:', type=('build', 'run')) + depends_on('py-ipython-genutils', type=('build', 'run')) + depends_on('py-traitlets', type=('build', 'run')) + depends_on('py-jupyter-core', type=('build', 'run')) + depends_on('py-jupyter-client', type=('build', 'run')) + depends_on('py-jupyter-console', type=('build', 'run')) + depends_on('py-nbformat', type=('build', 'run')) + depends_on('py-nbconvert', type=('build', 'run')) + depends_on('py-ipykernel', type=('build', 'run')) + depends_on('py-terminado@0.3.3:', when="+terminal", type=('build', 'run')) + depends_on('py-ipywidgets', when="+terminal", type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-lockfile/package.py b/var/spack/repos/builtin/packages/py-lockfile/package.py index 856276ec89..1e57e6a1d7 100644 --- a/var/spack/repos/builtin/packages/py-lockfile/package.py +++ b/var/spack/repos/builtin/packages/py-lockfile/package.py @@ -25,7 +25,7 @@ from spack import * -class PyLockfile(Package): +class PyLockfile(PythonPackage): """The lockfile package exports a LockFile class which provides a simple API for locking files. Unlike the Windows msvcrt.locking function, the fcntl.lockf and flock functions, and the @@ -41,8 +41,4 @@ class PyLockfile(Package): version('0.10.2', '1aa6175a6d57f082cd12e7ac6102ab15') - extends("python") depends_on("py-setuptools", type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-logilab-common/package.py b/var/spack/repos/builtin/packages/py-logilab-common/package.py index e8c52493b5..4c20885760 100644 --- a/var/spack/repos/builtin/packages/py-logilab-common/package.py +++ b/var/spack/repos/builtin/packages/py-logilab-common/package.py @@ -22,11 +22,10 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -from spack import depends_on, extends, version -from spack import Package +from spack import * -class PyLogilabCommon(Package): +class PyLogilabCommon(PythonPackage): """Common modules used by Logilab projects""" homepage = "https://www.logilab.org/project/logilab-common" url = "https://pypi.python.org/packages/a7/31/1650d23e44794d46935d82b86e73454cc83b814cbe1365260ccce8a2f4c6/logilab-common-1.2.0.tar.gz" @@ -36,6 +35,3 @@ class PyLogilabCommon(Package): extends('python', ignore=r'bin/pytest') depends_on("py-setuptools", type='build') depends_on("py-six", type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-macs2/package.py b/var/spack/repos/builtin/packages/py-macs2/package.py index 09cb76c3d3..42318faa2a 100644 --- a/var/spack/repos/builtin/packages/py-macs2/package.py +++ b/var/spack/repos/builtin/packages/py-macs2/package.py @@ -26,7 +26,7 @@ from spack import * -class PyMacs2(Package): +class PyMacs2(PythonPackage): """MACS2 Model-based Analysis of ChIP-Seq""" homepage = "https://github.com/taoliu/MACS" @@ -34,13 +34,9 @@ class PyMacs2(Package): version('2.1.1.20160309', '2008ba838f83f34f8e0fddefe2a3a0159f4a740707c68058f815b31ddad53d26') - extends('python') depends_on('python@2.7:2.8') # Most Python packages only require py-setuptools as a build dependency. # However, py-macs2 requires py-setuptools during runtime as well. depends_on('py-setuptools', type=('build', 'run')) depends_on('py-numpy@1.6:', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-mako/package.py b/var/spack/repos/builtin/packages/py-mako/package.py index 799bc7b5d9..0707d0b12f 100644 --- a/var/spack/repos/builtin/packages/py-mako/package.py +++ b/var/spack/repos/builtin/packages/py-mako/package.py @@ -25,7 +25,7 @@ from spack import * -class PyMako(Package): +class PyMako(PythonPackage): """A super-fast templating language that borrows the best ideas from the existing templating languages.""" @@ -35,12 +35,7 @@ class PyMako(Package): version('1.0.4', 'c5fc31a323dd4990683d2f2da02d4e20') version('1.0.1', '9f0aafd177b039ef67b90ea350497a54') - extends('python') - depends_on('py-setuptools', type='build') # depends_on('py-mock', type='test') # TODO: Add test deptype # depends_on('py-pytest', type='test') # TODO: Add test deptype depends_on('py-markupsafe@0.9.2:', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-markdown/package.py b/var/spack/repos/builtin/packages/py-markdown/package.py index cded451f3b..23c8167021 100644 --- a/var/spack/repos/builtin/packages/py-markdown/package.py +++ b/var/spack/repos/builtin/packages/py-markdown/package.py @@ -26,7 +26,7 @@ from spack import * -class PyMarkdown(Package): +class PyMarkdown(PythonPackage): """This is a Python implementation of John Gruber's Markdown. It is almost completely compliant with the reference implementation, though there are a few very minor differences. See John's Syntax @@ -48,14 +48,9 @@ class PyMarkdown(Package): version('2.5.1', 'be6f6ba65a8fb843d2aaf1fcdd68c755') version('2.5', '8393ceab9c6e33357fb8a7be063a4849') - extends('python') - depends_on('py-setuptools', type='build') depends_on('python@2.7:2.8,3.2:3.4') def url_for_version(self, version): base_url = "https://github.com/waylan/Python-Markdown/archive" return "{0}/{1}-final.tar.gz".format(base_url, version) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-markupsafe/package.py b/var/spack/repos/builtin/packages/py-markupsafe/package.py index 5ba5bfb997..a31e3972de 100644 --- a/var/spack/repos/builtin/packages/py-markupsafe/package.py +++ b/var/spack/repos/builtin/packages/py-markupsafe/package.py @@ -25,7 +25,7 @@ from spack import * -class PyMarkupsafe(Package): +class PyMarkupsafe(PythonPackage): """MarkupSafe is a library for Python that implements a unicode string that is aware of HTML escaping rules and can be used to implement automatic string escaping. It is used by Jinja 2, the @@ -40,9 +40,4 @@ class PyMarkupsafe(Package): version('0.20', '7da066d9cb191a70aa85d0a3d43565d1') version('0.19', 'ccb3f746c807c5500850987006854a6d') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-matplotlib/package.py b/var/spack/repos/builtin/packages/py-matplotlib/package.py index cac4da9e79..d808b0fc4b 100644 --- a/var/spack/repos/builtin/packages/py-matplotlib/package.py +++ b/var/spack/repos/builtin/packages/py-matplotlib/package.py @@ -26,7 +26,7 @@ from spack import * import os -class PyMatplotlib(Package): +class PyMatplotlib(PythonPackage): """matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms.""" @@ -80,7 +80,7 @@ class PyMatplotlib(Package): # --------- Optional dependencies depends_on('pkg-config', type='build') # why not... - depends_on('py-pillow', when='+image', type=('build', 'run')) + depends_on('pil', when='+image', type=('build', 'run')) depends_on('py-ipython', when='+ipython') depends_on('ghostscript', when='+latex', type='run') depends_on('texlive', when='+latex', type='run') @@ -95,9 +95,10 @@ class PyMatplotlib(Package): # depends_on('ttconv') depends_on('py-six@1.9.0:', type=('build', 'run')) - def install(self, spec, prefix): - setup_py('build') - setup_py('install', '--prefix={0}'.format(prefix)) + @PythonPackage.sanity_check('install') + def set_backend(self): + spec = self.spec + prefix = self.prefix if '+qt' in spec or '+tk' in spec: # Set backend in matplotlib configuration file diff --git a/var/spack/repos/builtin/packages/py-mccabe/package.py b/var/spack/repos/builtin/packages/py-mccabe/package.py index ec913acb16..c413193cdc 100644 --- a/var/spack/repos/builtin/packages/py-mccabe/package.py +++ b/var/spack/repos/builtin/packages/py-mccabe/package.py @@ -25,7 +25,7 @@ from spack import * -class PyMccabe(Package): +class PyMccabe(PythonPackage): """Ned's script to check McCabe complexity.""" homepage = "https://github.com/PyCQA/mccabe" @@ -41,13 +41,9 @@ class PyMccabe(Package): version('0.2', '36d4808c37e187dbb1fe2373a0ac6645') version('0.1', '3c9e8e72612a9c01d865630cc569150a') - extends('python') depends_on('python@2.7:2.8,3.3:') depends_on('py-setuptools', type='build') # TODO: Add test dependencies # depends_on('py-pytest', type='test') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-meep/package.py b/var/spack/repos/builtin/packages/py-meep/package.py index a0d57e7373..0ebba77ac6 100644 --- a/var/spack/repos/builtin/packages/py-meep/package.py +++ b/var/spack/repos/builtin/packages/py-meep/package.py @@ -25,7 +25,7 @@ from spack import * -class PyMeep(Package): +class PyMeep(PythonPackage): """Python-meep is a wrapper around libmeep. It allows the scripting of Meep-simulations with Python""" @@ -36,7 +36,6 @@ class PyMeep(Package): variant('mpi', default=True, description='Enable MPI support') - extends('python') depends_on('py-numpy', type=('build', 'run')) depends_on('py-scipy', type=('build', 'run')) depends_on('py-matplotlib', type=('build', 'run')) @@ -50,9 +49,12 @@ class PyMeep(Package): # or else it can't handle newer C++ compilers and flags. depends_on('swig@1.3.39:3.0.2') - def install(self, spec, prefix): - setup = 'setup-mpi.py' if '+mpi' in spec else 'setup.py' + phases = ['clean', 'build_ext', 'install', 'bdist'] + def setup_file(self, spec, prefix): + return 'setup-mpi.py' if '+mpi' in spec else 'setup.py' + + def common_args(self, spec, prefix): include_dirs = [ spec['meep'].prefix.include, spec['py-numpy'].include @@ -69,7 +71,19 @@ class PyMeep(Package): include_flags = '-I{0}'.format(','.join(include_dirs)) library_flags = '-L{0}'.format(','.join(library_dirs)) - python(setup, 'clean', '--all') - python(setup, 'build_ext', include_flags, library_flags) - python(setup, 'install', '--prefix={0}'.format(prefix)) - python(setup, 'bdist', include_flags, library_flags) + # FIXME: For some reason, this stopped working. + # The -I and -L are no longer being properly forwarded to setup.py: + # meep_common.i:87: Error: Unable to find 'meep/mympi.hpp' + # meep_common.i:88: Error: Unable to find 'meep/vec.hpp' + # meep_common.i:89: Error: Unable to find 'meep.hpp' + + return [include_flags, library_flags] + + def clean_args(self, spec, prefix): + return ['--all'] + + def build_ext_args(self, spec, prefix): + return self.common_args(spec, prefix) + + def bdist_args(self, spec, prefix): + return self.common_args(spec, prefix) diff --git a/var/spack/repos/builtin/packages/py-mistune/package.py b/var/spack/repos/builtin/packages/py-mistune/package.py index 2daee1ed9a..cc859d4b78 100644 --- a/var/spack/repos/builtin/packages/py-mistune/package.py +++ b/var/spack/repos/builtin/packages/py-mistune/package.py @@ -22,11 +22,10 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -from spack import depends_on, extends, version -from spack import Package +from spack import * -class PyMistune(Package): +class PyMistune(PythonPackage): """ Python markdown parser """ @@ -39,8 +38,4 @@ class PyMistune(Package): version('0.5.1', '1c6cfce28a4aa90cf125217cd6c6fe6c') version('0.5', '997736554f1f95eea78c66ae339b5722') - extends('python') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-mock/package.py b/var/spack/repos/builtin/packages/py-mock/package.py index b33dfe7379..21edbd1dc0 100644 --- a/var/spack/repos/builtin/packages/py-mock/package.py +++ b/var/spack/repos/builtin/packages/py-mock/package.py @@ -25,7 +25,7 @@ from spack import * -class PyMock(Package): +class PyMock(PythonPackage): """mock is a library for testing in Python. It allows you to replace parts of your system under test with mock objects and make assertions about how they have been used.""" @@ -35,9 +35,5 @@ class PyMock(Package): version('1.3.0', '73ee8a4afb3ff4da1b4afa287f39fdeb') - extends('python') depends_on('py-pbr', type=('build', 'run')) depends_on('py-setuptools@17.1:', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-monotonic/package.py b/var/spack/repos/builtin/packages/py-monotonic/package.py index 6584aa248c..b02f954ccc 100644 --- a/var/spack/repos/builtin/packages/py-monotonic/package.py +++ b/var/spack/repos/builtin/packages/py-monotonic/package.py @@ -25,7 +25,7 @@ from spack import * -class PyMonotonic(Package): +class PyMonotonic(PythonPackage): """An implementation of time.monotonic() for Python 2 & < 3.3""" homepage = "https://pypi.python.org/pypi/monotonic" @@ -33,9 +33,4 @@ class PyMonotonic(Package): version('1.2', 'd14c93aabc3d6af25ef086b032b123cf') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-mpi4py/package.py b/var/spack/repos/builtin/packages/py-mpi4py/package.py index 11b1584397..7f8dc6b986 100644 --- a/var/spack/repos/builtin/packages/py-mpi4py/package.py +++ b/var/spack/repos/builtin/packages/py-mpi4py/package.py @@ -25,7 +25,7 @@ from spack import * -class PyMpi4py(Package): +class PyMpi4py(PythonPackage): """This package provides Python bindings for the Message Passing Interface (MPI) standard. It is implemented on top of the MPI-1/MPI-2 specification and exposes an API which grounds on the @@ -38,9 +38,5 @@ class PyMpi4py(Package): version('2.0.0', '4f7d8126d7367c239fd67615680990e3') version('1.3.1', 'dbe9d22bdc8ed965c23a7ceb6f32fc3c') - extends('python') depends_on('py-setuptools', type='build') depends_on('mpi') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-mpmath/package.py b/var/spack/repos/builtin/packages/py-mpmath/package.py index 846852aeb5..d379e0bd03 100644 --- a/var/spack/repos/builtin/packages/py-mpmath/package.py +++ b/var/spack/repos/builtin/packages/py-mpmath/package.py @@ -25,14 +25,9 @@ from spack import * -class PyMpmath(Package): +class PyMpmath(PythonPackage): """A Python library for arbitrary-precision floating-point arithmetic.""" homepage = "http://mpmath.org" url = "https://pypi.python.org/packages/source/m/mpmath/mpmath-all-0.19.tar.gz" version('0.19', 'd1b7e19dd6830d0d7b5e1bc93d46c02c') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-mx/package.py b/var/spack/repos/builtin/packages/py-mx/package.py index e72b281665..9af74555b1 100644 --- a/var/spack/repos/builtin/packages/py-mx/package.py +++ b/var/spack/repos/builtin/packages/py-mx/package.py @@ -25,7 +25,7 @@ from spack import * -class PyMx(Package): +class PyMx(PythonPackage): """The eGenix.com mx Base Distribution for Python is a collection of professional quality software tools which enhance Python's usability in many important areas such as fast text searching, @@ -36,8 +36,3 @@ class PyMx(Package): url = "https://downloads.egenix.com/python/egenix-mx-base-3.2.8.tar.gz" version('3.2.8', '9d9d3a25f9dc051a15e97f452413423b') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-mysqldb1/package.py b/var/spack/repos/builtin/packages/py-mysqldb1/package.py index 14534a57ca..8fd794aadb 100644 --- a/var/spack/repos/builtin/packages/py-mysqldb1/package.py +++ b/var/spack/repos/builtin/packages/py-mysqldb1/package.py @@ -25,15 +25,14 @@ from spack import * -class PyMysqldb1(Package): +class PyMysqldb1(PythonPackage): """Legacy mysql bindings for python""" homepage = "https://github.com/farcepest/MySQLdb1" url = "https://github.com/farcepest/MySQLdb1/archive/MySQLdb-1.2.5.tar.gz" - version('1.2.5', '332c8f4955b6bc0c79ea15170bf7321b') + version('1.2.5', '332c8f4955b6bc0c79ea15170bf7321b', + url="https://github.com/farcepest/MySQLdb1/archive/MySQLdb-1.2.5.tar.gz") - extends('python') - depends_on('py-setuptools', type='build') + # FIXME: Missing dependency on mysql - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) + depends_on('py-setuptools', type='build') diff --git a/var/spack/repos/builtin/packages/py-nbconvert/package.py b/var/spack/repos/builtin/packages/py-nbconvert/package.py index 41a1c89686..0e221d355c 100644 --- a/var/spack/repos/builtin/packages/py-nbconvert/package.py +++ b/var/spack/repos/builtin/packages/py-nbconvert/package.py @@ -25,30 +25,31 @@ from spack import * -class PyNbconvert(Package): +class PyNbconvert(PythonPackage): """Jupyter Notebook Conversion""" homepage = "https://github.com/jupyter/nbconvert" url = "https://github.com/jupyter/nbconvert/archive/4.2.0.tar.gz" - version('4.2.0' , '8bd88771cc00f575d5edcd0b5197f964') - version('4.1.0' , '06655576713ba1ff7cece2b92760c187') - version('4.0.0' , '9661620b1e10a7b46f314588d2d0932f') - - extends('python') + version('4.2.0', '8bd88771cc00f575d5edcd0b5197f964') + version('4.1.0', '06655576713ba1ff7cece2b92760c187') + version('4.0.0', '9661620b1e10a7b46f314588d2d0932f') depends_on('py-setuptools', type='build') depends_on('py-pycurl', type='build') depends_on('python@2.7:2.7.999,3.3:') - depends_on('py-mistune') - depends_on('py-jinja2') - depends_on('py-pygments') - depends_on('py-traitlets') - depends_on('py-jupyter-core') - depends_on('py-nbformat') - depends_on('py-entrypoints') - depends_on('py-tornado') - depends_on('py-jupyter-client') + depends_on('py-mistune', type=('build', 'run')) + depends_on('py-jinja2', type=('build', 'run')) + depends_on('py-pygments', type=('build', 'run')) + depends_on('py-traitlets', type=('build', 'run')) + depends_on('py-jupyter-core', type=('build', 'run')) + depends_on('py-nbformat', type=('build', 'run')) + depends_on('py-entrypoints', type=('build', 'run')) + depends_on('py-tornado', type=('build', 'run')) + depends_on('py-jupyter-client', type=('build', 'run')) - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + # FIXME: + # Failed, try again after installing PycURL with `pip install pycurl` to avoid outdated SSL. # noqa + # Failed to download css from https://cdn.jupyter.org/notebook/4.1.0/style/style.min.css: [Errno socket error] [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:661) # noqa + # Downloading CSS: https://cdn.jupyter.org/notebook/4.1.0/style/style.min.css # noqa + # error: Need Notebook CSS to proceed: nbconvert/resources/style.min.css diff --git a/var/spack/repos/builtin/packages/py-nbformat/package.py b/var/spack/repos/builtin/packages/py-nbformat/package.py index f45236fc34..4ecf7f8fcf 100644 --- a/var/spack/repos/builtin/packages/py-nbformat/package.py +++ b/var/spack/repos/builtin/packages/py-nbformat/package.py @@ -25,7 +25,7 @@ from spack import * -class PyNbformat(Package): +class PyNbformat(PythonPackage): """The Jupyter Notebook format""" homepage = "https://github.com/jupyter/nbformat" @@ -35,13 +35,8 @@ class PyNbformat(Package): version('4.0.1', 'ab7172e517c9d561c0c01eef5631b4c8') version('4.0.0', '7cf61359fa4e9cf3ef5e969e2fcb909e') - extends('python') - depends_on('py-setuptools', type='build') - depends_on('py-ipython-genutils') - depends_on('py-traitlets') - depends_on('py-jsonschema') - depends_on('py-jupyter-core') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + depends_on('py-ipython-genutils', type=('build', 'run')) + depends_on('py-traitlets', type=('build', 'run')) + depends_on('py-jsonschema', type=('build', 'run')) + depends_on('py-jupyter-core', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-nestle/package.py b/var/spack/repos/builtin/packages/py-nestle/package.py index a2ce2f514f..22dc9debe1 100644 --- a/var/spack/repos/builtin/packages/py-nestle/package.py +++ b/var/spack/repos/builtin/packages/py-nestle/package.py @@ -25,7 +25,7 @@ from spack import * -class PyNestle(Package): +class PyNestle(PythonPackage): """Nested sampling algorithms for evaluating Bayesian evidence.""" homepage = "http://kbarbary.github.io/nestle/" @@ -34,11 +34,7 @@ class PyNestle(Package): version('0.1.1', '4875c0f9a0a8e263c1d7f5fa6ce604c5') # Required dependencies - extends('python') depends_on('py-numpy', type=('build', 'run')) # Optional dependencies depends_on('py-scipy', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-netcdf/package.py b/var/spack/repos/builtin/packages/py-netcdf/package.py index 967b8e0613..2d35320ca0 100644 --- a/var/spack/repos/builtin/packages/py-netcdf/package.py +++ b/var/spack/repos/builtin/packages/py-netcdf/package.py @@ -25,18 +25,14 @@ from spack import * -class PyNetcdf(Package): +class PyNetcdf(PythonPackage): """Python interface to the netCDF Library.""" homepage = "http://unidata.github.io/netcdf4-python" url = "https://github.com/Unidata/netcdf4-python/tarball/v1.2.3.1rel" version('1.2.3.1', '4fc4320d4f2a77b894ebf8da1c9895af') - extends('python') depends_on('py-numpy', type=('build', 'run')) depends_on('py-cython', type=('build', 'run')) depends_on('py-setuptools', type=('build', 'run')) depends_on('netcdf') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-networkx/package.py b/var/spack/repos/builtin/packages/py-networkx/package.py index 3086709a79..6eca70c15c 100644 --- a/var/spack/repos/builtin/packages/py-networkx/package.py +++ b/var/spack/repos/builtin/packages/py-networkx/package.py @@ -25,7 +25,7 @@ from spack import * -class PyNetworkx(Package): +class PyNetworkx(PythonPackage): """NetworkX is a Python package for the creation, manipulation, and study of the structure, dynamics, and functions of complex networks.""" homepage = "http://networkx.github.io/" @@ -33,10 +33,5 @@ class PyNetworkx(Package): version('1.11', '6ef584a879e9163013e9a762e1cf7cd1') - extends('python') - depends_on('py-decorator', type=('build', 'run')) depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-nose/package.py b/var/spack/repos/builtin/packages/py-nose/package.py index f1872c85b4..050a018ffa 100644 --- a/var/spack/repos/builtin/packages/py-nose/package.py +++ b/var/spack/repos/builtin/packages/py-nose/package.py @@ -25,7 +25,7 @@ from spack import * -class PyNose(Package): +class PyNose(PythonPackage): """nose extends the test loading and running features of unittest, making it easier to write, find and run tests.""" @@ -36,8 +36,4 @@ class PyNose(Package): version('1.3.6', '0ca546d81ca8309080fc80cb389e7a16') version('1.3.7', '4d3ad0ff07b61373d2cefc89c5d0b20b') - extends('python') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-numexpr/package.py b/var/spack/repos/builtin/packages/py-numexpr/package.py index b8e1ca5e0c..ee89820f5b 100644 --- a/var/spack/repos/builtin/packages/py-numexpr/package.py +++ b/var/spack/repos/builtin/packages/py-numexpr/package.py @@ -25,16 +25,16 @@ from spack import * -class PyNumexpr(Package): +class PyNumexpr(PythonPackage): """Fast numerical expression evaluator for NumPy""" homepage = "https://pypi.python.org/pypi/numexpr" url = "https://pypi.python.org/packages/source/n/numexpr/numexpr-2.4.6.tar.gz" + version('2.6.1', '6365245705b446426df9543ad218dd8e', + url="https://pypi.python.org/packages/c6/f0/11628fa4d332d8fe9ab0ba8e9bfe0e065fb6b5324859171ee72d84e079c0/numexpr-2.6.1.tar.gz") + version('2.5', '84f66cced45ba3e30dcf77a937763aaa') version('2.4.6', '17ac6fafc9ea1ce3eb970b9abccb4fbd') - version('2.5', '84f66cced45ba3e30dcf77a937763aaa') - extends('python') - depends_on('py-numpy', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) + depends_on('python@2.6:') + depends_on('py-numpy@1.6:', type=('build', 'run')) + depends_on('py-setuptools', type='build') diff --git a/var/spack/repos/builtin/packages/py-numpy/package.py b/var/spack/repos/builtin/packages/py-numpy/package.py index 22b4d98b9d..25a5f04b8c 100644 --- a/var/spack/repos/builtin/packages/py-numpy/package.py +++ b/var/spack/repos/builtin/packages/py-numpy/package.py @@ -26,7 +26,7 @@ from spack import * import platform -class PyNumpy(Package): +class PyNumpy(PythonPackage): """NumPy is the fundamental package for scientific computing with Python. It contains among other things: a powerful N-dimensional array object, sophisticated (broadcasting) functions, tools for integrating C/C++ and @@ -46,7 +46,6 @@ class PyNumpy(Package): variant('blas', default=True) variant('lapack', default=True) - extends('python') depends_on('python@2.6:2.8,3.2:') depends_on('py-nose', type='build') depends_on('py-setuptools', type='build') @@ -65,7 +64,8 @@ class PyNumpy(Package): self.spec.version, python_version, arch), 'numpy/core/include') - def install(self, spec, prefix): + def patch(self): + spec = self.spec # for build notes see http://www.scipy.org/scipylib/building/linux.html lapackblas = LibraryList('') if '+lapack' in spec: @@ -82,5 +82,3 @@ class PyNumpy(Package): if not ((platform.system() == "Darwin") and (platform.mac_ver()[0] == '10.12')): f.write('rpath=%s\n' % ':'.join(lapackblas.directories)) - - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-openpyxl/package.py b/var/spack/repos/builtin/packages/py-openpyxl/package.py index b9d8636742..d396916035 100644 --- a/var/spack/repos/builtin/packages/py-openpyxl/package.py +++ b/var/spack/repos/builtin/packages/py-openpyxl/package.py @@ -25,7 +25,7 @@ from spack import * -class PyOpenpyxl(Package): +class PyOpenpyxl(PythonPackage): """A Python library to read/write Excel 2007 xlsx/xlsm files""" homepage = 'http://openpyxl.readthedocs.org/' @@ -33,10 +33,5 @@ class PyOpenpyxl(Package): version('2.4.0-a1', 'e5ca6d23ceccb15115d45cdf26e736fc') - extends('python') - depends_on('py-jdcal', type=('build', 'run')) depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-ordereddict/package.py b/var/spack/repos/builtin/packages/py-ordereddict/package.py index 6e038b789c..b560990f00 100644 --- a/var/spack/repos/builtin/packages/py-ordereddict/package.py +++ b/var/spack/repos/builtin/packages/py-ordereddict/package.py @@ -25,7 +25,7 @@ from spack import * -class PyOrdereddict(Package): +class PyOrdereddict(PythonPackage): """A drop-in substitute for Py2.7's new collections. OrderedDict that works in Python 2.4-2.6.""" @@ -33,9 +33,3 @@ class PyOrdereddict(Package): url = "https://pypi.python.org/packages/source/o/ordereddict/ordereddict-1.1.tar.gz" version('1.1', 'a0ed854ee442051b249bfad0f638bbec') - - extends('python') - depends_on('python@2.4:2.6.999') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-pandas/package.py b/var/spack/repos/builtin/packages/py-pandas/package.py index eb2d948f22..c0da33054f 100644 --- a/var/spack/repos/builtin/packages/py-pandas/package.py +++ b/var/spack/repos/builtin/packages/py-pandas/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPandas(Package): +class PyPandas(PythonPackage): """pandas is a Python package providing fast, flexible, and expressive data structures designed to make working with relational or labeled data both easy and intuitive. It aims to be the @@ -42,13 +42,9 @@ class PyPandas(Package): version('0.16.1', 'fac4f25748f9610a3e00e765474bdea8') version('0.18.0', 'f143762cd7a59815e348adf4308d2cf6') - extends('python') depends_on('py-dateutil', type=('build', 'run')) depends_on('py-numpy', type=('build', 'run')) depends_on('py-setuptools', type='build') depends_on('py-pytz', type=('build', 'run')) depends_on('py-numexpr', type=('build', 'run')) depends_on('py-bottleneck', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pathlib2/package.py b/var/spack/repos/builtin/packages/py-pathlib2/package.py index 8db18261b8..8951feff4c 100644 --- a/var/spack/repos/builtin/packages/py-pathlib2/package.py +++ b/var/spack/repos/builtin/packages/py-pathlib2/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPathlib2(Package): +class PyPathlib2(PythonPackage): """Backport of pathlib from python 3.4""" homepage = "https://pypi.python.org/pypi/pathlib2" @@ -33,10 +33,5 @@ class PyPathlib2(Package): version('2.1.0', '38e4f58b4d69dfcb9edb49a54a8b28d2') - extends('python') - depends_on('py-setuptools', type='build') depends_on('python@:3.3.999') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-pathspec/package.py b/var/spack/repos/builtin/packages/py-pathspec/package.py index 399f3c91ef..e5030abc70 100644 --- a/var/spack/repos/builtin/packages/py-pathspec/package.py +++ b/var/spack/repos/builtin/packages/py-pathspec/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPathspec(Package): +class PyPathspec(PythonPackage): """pathspec extends the test loading and running features of unittest, making it easier to write, find and run tests.""" @@ -34,8 +34,4 @@ class PyPathspec(Package): version('0.3.4', '2a4af9bf2dee98845d583ec61a00d05d', url='https://pypi.python.org/packages/14/9d/c9d790d373d6f6938d793e9c549b87ad8670b6fa7fc6176485e6ef11c1a4/pathspec-0.3.4.tar.gz') - extends('python') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pbr/package.py b/var/spack/repos/builtin/packages/py-pbr/package.py index 0251e436b1..2a320eb76d 100644 --- a/var/spack/repos/builtin/packages/py-pbr/package.py +++ b/var/spack/repos/builtin/packages/py-pbr/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPbr(Package): +class PyPbr(PythonPackage): """PBR is a library that injects some useful and sensible default behaviors into your setuptools run.""" homepage = "https://pypi.python.org/pypi/pbr" @@ -33,9 +33,4 @@ class PyPbr(Package): version('1.8.1', 'c8f9285e1a4ca6f9654c529b158baa3a') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-periodictable/package.py b/var/spack/repos/builtin/packages/py-periodictable/package.py index d4f732a587..9ff1543018 100644 --- a/var/spack/repos/builtin/packages/py-periodictable/package.py +++ b/var/spack/repos/builtin/packages/py-periodictable/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPeriodictable(Package): +class PyPeriodictable(PythonPackage): """nose extends the test loading and running features of unittest, making it easier to write, find and run tests.""" @@ -36,7 +36,3 @@ class PyPeriodictable(Package): depends_on('py-numpy', type=('build', 'run')) depends_on('py-pyparsing', type=('build', 'run')) - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pexpect/package.py b/var/spack/repos/builtin/packages/py-pexpect/package.py index 99b69fc30b..5c194c44b6 100644 --- a/var/spack/repos/builtin/packages/py-pexpect/package.py +++ b/var/spack/repos/builtin/packages/py-pexpect/package.py @@ -25,16 +25,12 @@ from spack import * -class PyPexpect(Package): +class PyPexpect(PythonPackage): """Pexpect allows easy control of interactive console applications.""" homepage = "https://pypi.python.org/pypi/pexpect" url = "https://pypi.io/packages/source/p/pexpect/pexpect-4.2.1.tar.gz" version('4.2.1', '3694410001a99dff83f0b500a1ca1c95') + version('3.3', '0de72541d3f1374b795472fed841dce8') - extends('python') - - depends_on('py-ptyprocess') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) + depends_on('py-ptyprocess', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-phonopy/package.py b/var/spack/repos/builtin/packages/py-phonopy/package.py index 748f0dd36b..b7f1003e28 100644 --- a/var/spack/repos/builtin/packages/py-phonopy/package.py +++ b/var/spack/repos/builtin/packages/py-phonopy/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPhonopy(Package): +class PyPhonopy(PythonPackage): """Phonopy is an open source package for phonon calculations at harmonic and quasi-harmonic levels.""" homepage = "http://atztogo.github.io/phonopy/index.html" @@ -33,11 +33,7 @@ class PyPhonopy(Package): version('1.10.0', '973ed1bcea46e21b9bf747aab9061ff6') - extends('python') depends_on('py-numpy', type=('build', 'run')) depends_on('py-scipy', type=('build', 'run')) depends_on('py-matplotlib', type=('build', 'run')) depends_on('py-pyyaml', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--home=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pickleshare/package.py b/var/spack/repos/builtin/packages/py-pickleshare/package.py index 09a810869d..9bf9ff63fb 100644 --- a/var/spack/repos/builtin/packages/py-pickleshare/package.py +++ b/var/spack/repos/builtin/packages/py-pickleshare/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPickleshare(Package): +class PyPickleshare(PythonPackage): """Tiny 'shelve'-like database with concurrency support""" homepage = "https://pypi.python.org/pypi/pickleshare" @@ -33,9 +33,4 @@ class PyPickleshare(Package): version('0.7.4', '6a9e5dd8dfc023031f6b7b3f824cab12') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-pil/package.py b/var/spack/repos/builtin/packages/py-pil/package.py index f5d684962d..fb14fb9b27 100644 --- a/var/spack/repos/builtin/packages/py-pil/package.py +++ b/var/spack/repos/builtin/packages/py-pil/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPil(Package): +class PyPil(PythonPackage): """The Python Imaging Library (PIL) adds image processing capabilities to your Python interpreter. This library supports many file formats, and provides powerful image processing and graphics capabilities.""" @@ -39,8 +39,4 @@ class PyPil(Package): # py-pil currently only works with Python2. # If you are using Python 3, try using py-pillow instead. - extends('python') depends_on('python@1.5.2:2.8') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pillow/package.py b/var/spack/repos/builtin/packages/py-pillow/package.py index 3125a822b4..5729c5c3dd 100644 --- a/var/spack/repos/builtin/packages/py-pillow/package.py +++ b/var/spack/repos/builtin/packages/py-pillow/package.py @@ -23,9 +23,10 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * +import sys -class PyPillow(Package): +class PyPillow(PythonPackage): """Pillow is a fork of the Python Imaging Library (PIL). It adds image processing capabilities to your Python interpreter. This library supports many file formats, and provides powerful image processing and graphics @@ -64,8 +65,7 @@ class PyPillow(Package): # description='Provide improved color quantization') # Required dependencies - extends('python') - depends_on('binutils', type='build') + depends_on('binutils', type='build', when=sys.platform != 'darwin') depends_on('py-setuptools', type='build') # Recommended dependencies @@ -83,6 +83,8 @@ class PyPillow(Package): # depends_on('webpmux', when='+webpmux') # depends_on('imagequant', when='+imagequant') + phases = ['build_ext', 'install'] + def patch(self): """Patch setup.py to provide lib and include directories for dependencies.""" @@ -121,13 +123,10 @@ class PyPillow(Package): spec['openjpeg'].prefix.lib, spec['openjpeg'].prefix.include)) - def install(self, spec, prefix): + def build_ext_args(self, spec, prefix): def variant_to_flag(variant): able = 'enable' if '+{0}'.format(variant) in spec else 'disable' return '--{0}-{1}'.format(able, variant) variants = ['jpeg', 'zlib', 'tiff', 'freetype', 'lcms', 'jpeg2000'] - build_args = list(map(variant_to_flag, variants)) - - setup_py('build_ext', *build_args) - setup_py('install', '--prefix={0}'.format(prefix)) + return list(map(variant_to_flag, variants)) diff --git a/var/spack/repos/builtin/packages/py-pip/package.py b/var/spack/repos/builtin/packages/py-pip/package.py index dca73f763f..73e1661245 100644 --- a/var/spack/repos/builtin/packages/py-pip/package.py +++ b/var/spack/repos/builtin/packages/py-pip/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPip(Package): +class PyPip(PythonPackage): """The PyPA recommended tool for installing Python packages.""" homepage = "https://pypi.python.org/pypi/pip" @@ -33,9 +33,4 @@ class PyPip(Package): version('9.0.1', '35f01da33009719497f01a4ba69d63c9') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-ply/package.py b/var/spack/repos/builtin/packages/py-ply/package.py index d249de64fa..f5a1e537e2 100644 --- a/var/spack/repos/builtin/packages/py-ply/package.py +++ b/var/spack/repos/builtin/packages/py-ply/package.py @@ -25,14 +25,9 @@ from spack import * -class PyPly(Package): +class PyPly(PythonPackage): """PLY is nothing more than a straightforward lex/yacc implementation.""" homepage = "http://www.dabeaz.com/ply" url = "http://www.dabeaz.com/ply/ply-3.8.tar.gz" version('3.8', '94726411496c52c87c2b9429b12d5c50') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pmw/package.py b/var/spack/repos/builtin/packages/py-pmw/package.py index 5173864f62..3293d94cd6 100644 --- a/var/spack/repos/builtin/packages/py-pmw/package.py +++ b/var/spack/repos/builtin/packages/py-pmw/package.py @@ -25,15 +25,10 @@ from spack import * -class PyPmw(Package): +class PyPmw(PythonPackage): """Pmw is a toolkit for building high-level compound widgets, or megawidgets, constructed using other widgets as component parts.""" homepage = "https://pypi.python.org/pypi/Pmw" url = "https://pypi.python.org/packages/source/P/Pmw/Pmw-2.0.0.tar.gz" version('2.0.0', 'c7c3f26c4f5abaa99807edefee578fc0') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-prettytable/package.py b/var/spack/repos/builtin/packages/py-prettytable/package.py index 55a323a0d6..2203f68af0 100644 --- a/var/spack/repos/builtin/packages/py-prettytable/package.py +++ b/var/spack/repos/builtin/packages/py-prettytable/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPrettytable(Package): +class PyPrettytable(PythonPackage): """PrettyTable is a simple Python library designed to make it quick and easy to represent tabular data in visually appealing ASCII tables. @@ -36,8 +36,4 @@ class PyPrettytable(Package): version('0.7.2', 'a6b80afeef286ce66733d54a0296b13b') - extends("python") depends_on("py-setuptools", type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-proj/package.py b/var/spack/repos/builtin/packages/py-proj/package.py index a839a1d0b6..949aab88c3 100644 --- a/var/spack/repos/builtin/packages/py-proj/package.py +++ b/var/spack/repos/builtin/packages/py-proj/package.py @@ -25,7 +25,7 @@ from spack import * -class PyProj(Package): +class PyProj(PythonPackage): """Python interface to the PROJ.4 Library.""" homepage = "http://jswhit.github.io/pyproj/" url = "https://github.com/jswhit/pyproj/tarball/v1.9.5.1rel" @@ -37,8 +37,6 @@ class PyProj(Package): version('1.9.5.1', 'a4b80d7170fc82aee363d7f980279835') - extends('python') - depends_on('py-cython', type='build') depends_on('py-setuptools', type='build') @@ -46,6 +44,3 @@ class PyProj(Package): # The py-proj git repo actually includes the correct version of PROJ.4, # which is built internally as part of the py-proj build. # Adding depends_on('proj') will cause mysterious build errors. - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-prompt-toolkit/package.py b/var/spack/repos/builtin/packages/py-prompt-toolkit/package.py index 5c81cf1701..da48cb932f 100644 --- a/var/spack/repos/builtin/packages/py-prompt-toolkit/package.py +++ b/var/spack/repos/builtin/packages/py-prompt-toolkit/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPromptToolkit(Package): +class PyPromptToolkit(PythonPackage): """Library for building powerful interactive command lines in Python""" homepage = "https://pypi.python.org/pypi/prompt_toolkit" @@ -33,11 +33,6 @@ class PyPromptToolkit(Package): version('1.0.9', 'a39f91a54308fb7446b1a421c11f227c') - extends('python') - depends_on('py-setuptools', type='build') - depends_on('py-six@1.9.0:') - depends_on('py-wcwidth') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + depends_on('py-six@1.9.0:', type=('build', 'run')) + depends_on('py-wcwidth', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-protobuf/package.py b/var/spack/repos/builtin/packages/py-protobuf/package.py index d1186775bb..4cdb3801a5 100644 --- a/var/spack/repos/builtin/packages/py-protobuf/package.py +++ b/var/spack/repos/builtin/packages/py-protobuf/package.py @@ -25,7 +25,7 @@ from spack import * -class PyProtobuf(Package): +class PyProtobuf(PythonPackage): """Protocol buffers are Google's language-neutral, platform-neutral, extensible mechanism for serializing structured data - think XML, but smaller, faster, and simpler. You define how you want your data to be @@ -42,9 +42,4 @@ class PyProtobuf(Package): version('2.4.1', '72f5141d20ab1bcae6b1e00acfb1068a') version('2.3.0', 'bb020c962f252fe81bfda8fb433bafdd') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-ptyprocess/package.py b/var/spack/repos/builtin/packages/py-ptyprocess/package.py index fc65e617ba..2419793227 100644 --- a/var/spack/repos/builtin/packages/py-ptyprocess/package.py +++ b/var/spack/repos/builtin/packages/py-ptyprocess/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPtyprocess(Package): +class PyPtyprocess(PythonPackage): """Run a subprocess in a pseudo terminal""" homepage = "https://pypi.python.org/pypi/ptyprocess" @@ -33,9 +33,4 @@ class PyPtyprocess(Package): version('0.5.1', '94e537122914cc9ec9c1eadcd36e73a1') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-pudb/package.py b/var/spack/repos/builtin/packages/py-pudb/package.py index d9c2d3e0a4..66896bd83f 100644 --- a/var/spack/repos/builtin/packages/py-pudb/package.py +++ b/var/spack/repos/builtin/packages/py-pudb/package.py @@ -26,7 +26,7 @@ from spack import * -class PyPudb(Package): +class PyPudb(PythonPackage): """Full-screen console debugger for Python""" homepage = "http://mathema.tician.de/software/pudb" @@ -34,11 +34,6 @@ class PyPudb(Package): version('2016.2', '4573b70163329c1cb59836a357bfdf7c') - extends('python') - depends_on('py-setuptools', type='build') depends_on('py-urwid@1.1.1:', type=('build', 'run')) depends_on('py-pygments@1.0:', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-py/package.py b/var/spack/repos/builtin/packages/py-py/package.py index f624aaf389..5a963105bd 100644 --- a/var/spack/repos/builtin/packages/py-py/package.py +++ b/var/spack/repos/builtin/packages/py-py/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPy(Package): +class PyPy(PythonPackage): """library with cross-python path, ini-parsing, io, code, log facilities""" homepage = "http://pylib.readthedocs.io/en/latest/" @@ -33,9 +33,4 @@ class PyPy(Package): version('1.4.31', '5d2c63c56dc3f2115ec35c066ecd582b') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-py2cairo/package.py b/var/spack/repos/builtin/packages/py-py2cairo/package.py index efc3645745..bb404c61f0 100644 --- a/var/spack/repos/builtin/packages/py-py2cairo/package.py +++ b/var/spack/repos/builtin/packages/py-py2cairo/package.py @@ -26,19 +26,19 @@ from spack import * class PyPy2cairo(Package): - """bindings for the Cairo for Python 2, - to be used in Python.""" + """Pycairo is a set of Python bindings for the cairo graphics library.""" - homepage = "https://pypi.python.org/pypi/pycairo" + homepage = "https://www.cairographics.org/pycairo/" url = "https://cairographics.org/releases/py2cairo-1.10.0.tar.bz2" version('1.10.0', '20337132c4ab06c1146ad384d55372c5') extends('python') - depends_on("cairo") - depends_on("pixman") + + depends_on('cairo+X') + depends_on('pixman') def install(self, spec, prefix): - python('waf', 'configure', '--prefix=%s' % prefix) + python('waf', 'configure', '--prefix={0}'.format(prefix)) python('waf', 'build') python('waf', 'install') diff --git a/var/spack/repos/builtin/packages/py-py2neo/package.py b/var/spack/repos/builtin/packages/py-py2neo/package.py index aed0859021..1db080ac97 100644 --- a/var/spack/repos/builtin/packages/py-py2neo/package.py +++ b/var/spack/repos/builtin/packages/py-py2neo/package.py @@ -22,11 +22,10 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -from spack import depends_on, extends, version -from spack import Package +from spack import * -class PyPy2neo(Package): +class PyPy2neo(PythonPackage): """Py2neo is a client library and toolkit for working with Neo4j from within Python applications and from the command line.""" @@ -40,7 +39,3 @@ class PyPy2neo(Package): version('2.0.4', 'b3f7efd3344dc3f66db4eda11e5899f7') depends_on("py-setuptools", type='build') - extends("python") - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pychecker/package.py b/var/spack/repos/builtin/packages/py-pychecker/package.py index b1f8aad33f..de09b380c9 100644 --- a/var/spack/repos/builtin/packages/py-pychecker/package.py +++ b/var/spack/repos/builtin/packages/py-pychecker/package.py @@ -25,14 +25,9 @@ from spack import * -class PyPychecker(Package): - """""" +class PyPychecker(PythonPackage): + """Python source code checking tool.""" homepage = "http://pychecker.sourceforge.net/" url = "http://sourceforge.net/projects/pychecker/files/pychecker/0.8.19/pychecker-0.8.19.tar.gz" version('0.8.19', 'c37182863dfb09209d6ba4f38fce9d2b') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pycodestyle/package.py b/var/spack/repos/builtin/packages/py-pycodestyle/package.py index 9feb5eb8f6..3e668a2704 100644 --- a/var/spack/repos/builtin/packages/py-pycodestyle/package.py +++ b/var/spack/repos/builtin/packages/py-pycodestyle/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPycodestyle(Package): +class PyPycodestyle(PythonPackage): """pycodestyle is a tool to check your Python code against some of the style conventions in PEP 8. Note: formerly called pep8.""" @@ -42,11 +42,6 @@ class PyPycodestyle(Package): version('1.5.5', 'cfa12df9b86b3a1dfb13aced1927e12f') version('1.5.4', '3977a760829652543544074c684610ee') - extends('python') - # Most Python packages only require py-setuptools as a build dependency. # However, py-pycodestyle requires py-setuptools during runtime as well. depends_on('py-setuptools', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-pycparser/package.py b/var/spack/repos/builtin/packages/py-pycparser/package.py index e7b91f4495..8de5c39d32 100644 --- a/var/spack/repos/builtin/packages/py-pycparser/package.py +++ b/var/spack/repos/builtin/packages/py-pycparser/package.py @@ -25,15 +25,11 @@ from spack import * -class PyPycparser(Package): +class PyPycparser(PythonPackage): """A complete parser of the C language, written in pure python.""" homepage = "https://github.com/eliben/pycparser" url = "https://pypi.python.org/packages/source/p/pycparser/pycparser-2.13.tar.gz" version('2.13', 'e4fe1a2d341b22e25da0d22f034ef32f') - extends('python') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pycurl/package.py b/var/spack/repos/builtin/packages/py-pycurl/package.py index ab62440f8e..81a2a35064 100644 --- a/var/spack/repos/builtin/packages/py-pycurl/package.py +++ b/var/spack/repos/builtin/packages/py-pycurl/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPycurl(Package): +class PyPycurl(PythonPackage): """PycURL is a Python interface to libcurl. PycURL can be used to fetch objects identified by a URL from a Python program.""" @@ -34,10 +34,6 @@ class PyPycurl(Package): version('7.43.0', 'c94bdba01da6004fa38325e9bd6b9760') - extends('python') depends_on('python@2.6:') depends_on('py-setuptools', type='build') depends_on('curl@7.19.0:') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-pydatalog/package.py b/var/spack/repos/builtin/packages/py-pydatalog/package.py index b2203ae04c..600a34cdfc 100644 --- a/var/spack/repos/builtin/packages/py-pydatalog/package.py +++ b/var/spack/repos/builtin/packages/py-pydatalog/package.py @@ -25,14 +25,9 @@ from spack import * -class PyPydatalog(Package): +class PyPydatalog(PythonPackage): """pyDatalog adds logic programming to Python.""" homepage = 'https://pypi.python.org/pypi/pyDatalog/' url = 'https://pypi.python.org/packages/09/0b/2670eb9c0027aacfb5b5024ca75e5fee2f1261180ab8797108ffc941158a/pyDatalog-0.17.1.zip' version('0.17.1', '6b2682301200068d208d6f2d01723939') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pyelftools/package.py b/var/spack/repos/builtin/packages/py-pyelftools/package.py index 96a5645541..d586f14f0d 100644 --- a/var/spack/repos/builtin/packages/py-pyelftools/package.py +++ b/var/spack/repos/builtin/packages/py-pyelftools/package.py @@ -25,15 +25,10 @@ from spack import * -class PyPyelftools(Package): +class PyPyelftools(PythonPackage): """A pure-Python library for parsing and analyzing ELF files and DWARF debugging information""" homepage = "https://pypi.python.org/pypi/pyelftools" url = "https://pypi.python.org/packages/source/p/pyelftools/pyelftools-0.23.tar.gz" version('0.23', 'aa7cefa8bd2f63d7b017440c9084f310') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pyflakes/package.py b/var/spack/repos/builtin/packages/py-pyflakes/package.py index fc904d5334..53674bb6e4 100644 --- a/var/spack/repos/builtin/packages/py-pyflakes/package.py +++ b/var/spack/repos/builtin/packages/py-pyflakes/package.py @@ -25,8 +25,8 @@ from spack import * -class PyPyflakes(Package): - """A simple program which checks Python source files for errors..""" +class PyPyflakes(PythonPackage): + """A simple program which checks Python source files for errors.""" homepage = "https://github.com/PyCQA/pyflakes" url = "https://github.com/PyCQA/pyflakes/archive/1.3.0.tar.gz" @@ -42,11 +42,6 @@ class PyPyflakes(Package): version('0.9.1', '8108d2248e93ca6a315fa2dd31ee9bb1') version('0.9.0', '43c2bcee88606bde55dbf25a253ef886') - extends('python') - # Most Python packages only require py-setuptools as a build dependency. # However, py-pyflakes requires py-setuptools during runtime as well. depends_on('py-setuptools', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-pygments/package.py b/var/spack/repos/builtin/packages/py-pygments/package.py index c61b080e14..42e3366cdf 100644 --- a/var/spack/repos/builtin/packages/py-pygments/package.py +++ b/var/spack/repos/builtin/packages/py-pygments/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPygments(Package): +class PyPygments(PythonPackage): """Pygments is a syntax highlighting package written in Python.""" homepage = "https://pypi.python.org/pypi/pygments" @@ -35,9 +35,4 @@ class PyPygments(Package): version('2.0.1', 'e0daf4c14a4fe5b630da765904de4d6c') version('2.0.2', '238587a1370d62405edabd0794b3ec4a') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-pygobject/package.py b/var/spack/repos/builtin/packages/py-pygobject/package.py index 675eb8f004..1dae1a128b 100644 --- a/var/spack/repos/builtin/packages/py-pygobject/package.py +++ b/var/spack/repos/builtin/packages/py-pygobject/package.py @@ -30,6 +30,8 @@ class PyPygobject(AutotoolsPackage): to be used in Python.""" homepage = "https://pypi.python.org/pypi/pygobject" + + # FIXME: This URL is no longer available for download from PyPi url = "https://pypi.python.org/packages/6d/15/97c8b5ccca2be14cf59a2f79e15e3a82a1c3408a6b76b4107689a8b94846/pygobject-2.28.3.tar.bz2" version('2.28.3', 'aa64900b274c4661a5c32e52922977f9') diff --git a/var/spack/repos/builtin/packages/py-pylint/package.py b/var/spack/repos/builtin/packages/py-pylint/package.py index c0c31a7686..84830c9bcf 100644 --- a/var/spack/repos/builtin/packages/py-pylint/package.py +++ b/var/spack/repos/builtin/packages/py-pylint/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPylint(Package): +class PyPylint(PythonPackage): """array processing for numbers, strings, records, and objects.""" homepage = "https://pypi.python.org/pypi/pylint" url = "https://pypi.python.org/packages/source/p/pylint/pylint-1.4.1.tar.gz" @@ -39,6 +39,3 @@ class PyPylint(Package): depends_on('py-logilab-common', type=('build', 'run')) depends_on('py-nose', type='build') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pypar/package.py b/var/spack/repos/builtin/packages/py-pypar/package.py index ffbc232353..f10b6d807f 100644 --- a/var/spack/repos/builtin/packages/py-pypar/package.py +++ b/var/spack/repos/builtin/packages/py-pypar/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPypar(Package): +class PyPypar(PythonPackage): """Pypar is an efficient but easy-to-use module that allows programs written in Python to run in parallel on multiple processors and communicate using MPI.""" @@ -34,13 +34,11 @@ class PyPypar(Package): version('2.1.5_108', '7a1f28327d2a3b679f9455c843d850b8') - extends('python') depends_on('mpi') - depends_on('py-numpy') - - def install(self, spec, prefix): - with working_dir('source'): - setup_py('install', '--prefix=%s' % prefix) + depends_on('py-numpy', type=('build', 'run')) def url_for_version(self, version): return "https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/pypar/pypar-%s.tgz" % version + + def build_directory(self): + return 'source' diff --git a/var/spack/repos/builtin/packages/py-pyparsing/package.py b/var/spack/repos/builtin/packages/py-pyparsing/package.py index c3b4432d33..cb158a76d6 100644 --- a/var/spack/repos/builtin/packages/py-pyparsing/package.py +++ b/var/spack/repos/builtin/packages/py-pyparsing/package.py @@ -25,14 +25,9 @@ from spack import * -class PyPyparsing(Package): +class PyPyparsing(PythonPackage): """A Python Parsing Module.""" homepage = "https://pypi.python.org/pypi/pyparsing" url = "https://pypi.python.org/packages/source/p/pyparsing/pyparsing-2.0.3.tar.gz" version('2.0.3', '0fe479be09fc2cf005f753d3acc35939') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pyside/package.py b/var/spack/repos/builtin/packages/py-pyside/package.py index ab8c70140c..961aef7864 100644 --- a/var/spack/repos/builtin/packages/py-pyside/package.py +++ b/var/spack/repos/builtin/packages/py-pyside/package.py @@ -26,7 +26,7 @@ from spack import * import os -class PyPyside(Package): +class PyPyside(PythonPackage): """Python bindings for Qt.""" homepage = "https://pypi.python.org/pypi/pyside" url = "https://pypi.python.org/packages/source/P/PySide/PySide-1.2.2.tar.gz" @@ -36,7 +36,6 @@ class PyPyside(Package): depends_on('cmake', type='build') - extends('python') depends_on('py-setuptools', type='build') depends_on('py-sphinx', type=('build', 'run')) depends_on('qt@4.5:4.9') @@ -80,5 +79,5 @@ class PyPyside(Package): "'Programming Language :: Python :: 3.5'", "setup.py") - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix, '--jobs=%s' % make_jobs) + def build_args(self, spec, prefix): + return ['--jobs={0}'.format(make_jobs)] diff --git a/var/spack/repos/builtin/packages/py-pytables/package.py b/var/spack/repos/builtin/packages/py-pytables/package.py index 110d13f355..3d9bfb2c2f 100644 --- a/var/spack/repos/builtin/packages/py-pytables/package.py +++ b/var/spack/repos/builtin/packages/py-pytables/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPytables(Package): +class PyPytables(PythonPackage): """PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope with extremely large amounts of data.""" homepage = "http://www.pytables.org/" @@ -35,13 +35,12 @@ class PyPytables(Package): url='https://github.com/PyTables/PyTables/archive/v3.3.0.tar.gz') version('3.2.2', '7cbb0972e4d6580f629996a5bed92441') - extends('python') - depends_on('hdf5') - depends_on('py-numpy', type=('build', 'run')) - depends_on('py-numexpr', type=('build', 'run')) + depends_on('hdf5@1.8.0:1.8.999') + depends_on('py-numpy@1.8.0:', type=('build', 'run')) + depends_on('py-numexpr@2.5.2:', type=('build', 'run')) depends_on('py-cython', type=('build', 'run')) + depends_on('py-six', type=('build', 'run')) depends_on('py-setuptools', type='build') - def install(self, spec, prefix): - env["HDF5_DIR"] = spec['hdf5'].prefix - setup_py('install', '--prefix=%s' % prefix) + def setup_environment(self, spack_env, run_env): + spack_env.set('HDF5_DIR', self.spec['hdf5'].prefix) diff --git a/var/spack/repos/builtin/packages/py-pytest/package.py b/var/spack/repos/builtin/packages/py-pytest/package.py index 1ad356ff4b..4af49306c2 100644 --- a/var/spack/repos/builtin/packages/py-pytest/package.py +++ b/var/spack/repos/builtin/packages/py-pytest/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPytest(Package): +class PyPytest(PythonPackage): """pytest: simple powerful testing with Python.""" homepage = "http://doc.pytest.org/en/latest/" @@ -34,10 +34,5 @@ class PyPytest(Package): version('3.0.2', '61dc36e65a6f6c11c53b1388e043a9f5', url="https://pypi.python.org/packages/2b/05/e20806c99afaff43331f5fd8770bb346145303882f98ef3275fa1dd66f6d/pytest-3.0.2.tar.gz") - extends('python') - depends_on('py-setuptools', type='build') depends_on('py-py@1.4.29:', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-python-daemon/package.py b/var/spack/repos/builtin/packages/py-python-daemon/package.py index f8532c9175..9ed085f031 100644 --- a/var/spack/repos/builtin/packages/py-python-daemon/package.py +++ b/var/spack/repos/builtin/packages/py-python-daemon/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPythonDaemon(Package): +class PyPythonDaemon(PythonPackage): """Library to implement a well-behaved Unix daemon process. This library implements the well-behaved daemon specification of @@ -42,9 +42,5 @@ class PyPythonDaemon(Package): version('2.0.5', '73e7f49f525c51fa4a995aea4d80de41') - extends("python") depends_on("py-setuptools", type='build') depends_on("py-lockfile", type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-pytz/package.py b/var/spack/repos/builtin/packages/py-pytz/package.py index 486b86a467..7a905f9f98 100644 --- a/var/spack/repos/builtin/packages/py-pytz/package.py +++ b/var/spack/repos/builtin/packages/py-pytz/package.py @@ -25,7 +25,7 @@ from spack import * -class PyPytz(Package): +class PyPytz(PythonPackage): """World timezone definitions, modern and historical.""" homepage = "https://pypi.python.org/pypi/pytz" @@ -37,9 +37,4 @@ class PyPytz(Package): version('2015.4', '417a47b1c432d90333e42084a605d3d8') version('2016.3', 'abae92c3301b27bd8a9f56b14f52cb29') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-pyyaml/package.py b/var/spack/repos/builtin/packages/py-pyyaml/package.py index d760fcaae9..94d8fdd0e6 100644 --- a/var/spack/repos/builtin/packages/py-pyyaml/package.py +++ b/var/spack/repos/builtin/packages/py-pyyaml/package.py @@ -25,14 +25,9 @@ from spack import * -class PyPyyaml(Package): +class PyPyyaml(PythonPackage): """PyYAML is a YAML parser and emitter for Python.""" homepage = "http://pyyaml.org/wiki/PyYAML" url = "http://pyyaml.org/download/pyyaml/PyYAML-3.11.tar.gz" version('3.11', 'f50e08ef0fe55178479d3a618efe21db') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-readme-renderer/package.py b/var/spack/repos/builtin/packages/py-readme-renderer/package.py new file mode 100644 index 0000000000..2abe4bac74 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-readme-renderer/package.py @@ -0,0 +1,42 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyReadmeRenderer(PythonPackage): + """readme_renderer is a library for rendering "readme" descriptions + for Warehouse.""" + + homepage = "https://github.com/pypa/readme_renderer" + url = "https://pypi.python.org/packages/f2/6e/ef1bc3a24eb14e14574aba9dc1bd50bc9a5e7cc880e8ff9cadd385b4fb37/readme_renderer-16.0.tar.gz" + + version('16.0', '70321cea986956bcf2deef9981569f39') + + depends_on('python@2.6:2.7,3.2:3.3') + depends_on('py-setuptools', type='build') + depends_on('py-bleach', type=('build', 'run')) + depends_on('py-docutils@0.13.1:', type=('build', 'run')) + depends_on('py-pygments', type=('build', 'run')) + depends_on('py-six', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-restview/package.py b/var/spack/repos/builtin/packages/py-restview/package.py index 1aaf5d8f8a..871016fdb1 100644 --- a/var/spack/repos/builtin/packages/py-restview/package.py +++ b/var/spack/repos/builtin/packages/py-restview/package.py @@ -25,7 +25,7 @@ from spack import * -class PyRestview(Package): +class PyRestview(PythonPackage): """A viewer for ReStructuredText documents that renders them on the fly.""" homepage = "https://mg.pov.lt/restview/" @@ -33,9 +33,7 @@ class PyRestview(Package): version('2.6.1', 'ac8b70e15b8f1732d1733d674813666b') - extends('python') - depends_on('py-docutils', type=('build', 'run')) + depends_on('python@2.7.0:2.7.999,3.3:3.5') + depends_on('py-docutils@0.13.1:', type=('build', 'run')) + depends_on('py-readme-renderer', type=('build', 'run')) depends_on('py-pygments', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-rpy2/package.py b/var/spack/repos/builtin/packages/py-rpy2/package.py index 6308afd3dd..284a41894a 100644 --- a/var/spack/repos/builtin/packages/py-rpy2/package.py +++ b/var/spack/repos/builtin/packages/py-rpy2/package.py @@ -25,7 +25,7 @@ from spack import * -class PyRpy2(Package): +class PyRpy2(PythonPackage): """rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R from Python, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like @@ -38,11 +38,11 @@ class PyRpy2(Package): version('2.5.4', '115a20ac30883f096da2bdfcab55196d') version('2.5.6', 'a36e758b633ce6aec6a5f450bfee980f') - extends('python') + # FIXME: Missing dependencies: + # ld: cannot find -licuuc + # ld: cannot find -licui18 + depends_on('py-six', type=('build', 'run')) depends_on('py-setuptools', type='build') - depends_on('R') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) + depends_on('r') diff --git a/var/spack/repos/builtin/packages/py-rtree/package.py b/var/spack/repos/builtin/packages/py-rtree/package.py index dfb69f6983..55f98ad19e 100644 --- a/var/spack/repos/builtin/packages/py-rtree/package.py +++ b/var/spack/repos/builtin/packages/py-rtree/package.py @@ -23,10 +23,9 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os -class PyRtree(Package): +class PyRtree(PythonPackage): """Python interface to the RTREE.4 Library.""" homepage = "http://toblerity.org/rtree/" url = "https://github.com/Toblerity/rtree/tarball/0.8.2" @@ -46,16 +45,12 @@ class PyRtree(Package): # Does not work with Spack # version('0.8.2', '593c7ac6babc397b8ba58f1636c1e0a0') - extends('python') - depends_on('py-setuptools', type='build') depends_on('libspatialindex') - def install(self, spec, prefix): - lib = os.path.join(spec['libspatialindex'].prefix, 'lib') - os.environ['SPATIALINDEX_LIBRARY'] = \ - os.path.join(lib, 'libspatialindex.%s' % dso_suffix) - os.environ['SPATIALINDEX_C_LIBRARY'] = \ - os.path.join(lib, 'libspatialindex_c.%s' % dso_suffix) - - setup_py('install', '--prefix=%s' % prefix) + def setup_environment(self, spack_env, run_env): + lib = self.spec['libspatialindex'].prefix.lib + spack_env.set('SPATIALINDEX_LIBRARY', + join_path(lib, 'libspatialindex.%s' % dso_suffix)) + spack_env.set('SPATIALINDEX_C_LIBRARY', + join_path(lib, 'libspatialindex_c.%s' % dso_suffix)) diff --git a/var/spack/repos/builtin/packages/py-scientificpython/package.py b/var/spack/repos/builtin/packages/py-scientificpython/package.py index 48b56ef2fa..f0fe2e4e6c 100644 --- a/var/spack/repos/builtin/packages/py-scientificpython/package.py +++ b/var/spack/repos/builtin/packages/py-scientificpython/package.py @@ -25,7 +25,7 @@ from spack import * -class PyScientificpython(Package): +class PyScientificpython(PythonPackage): """ScientificPython is a collection of Python modules for scientific computing. It contains support for geometry, mathematical functions, statistics, physical units, IO, @@ -36,8 +36,3 @@ class PyScientificpython(Package): version('2.8.1', '73ee0df19c7b58cdf2954261f0763c77') depends_on('py-numpy') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-scikit-image/package.py b/var/spack/repos/builtin/packages/py-scikit-image/package.py index 9ea21bdbdf..d05341f9eb 100644 --- a/var/spack/repos/builtin/packages/py-scikit-image/package.py +++ b/var/spack/repos/builtin/packages/py-scikit-image/package.py @@ -25,7 +25,7 @@ from spack import * -class PyScikitImage(Package): +class PyScikitImage(PythonPackage): """Image processing algorithms for SciPy, including IO, morphology, filtering, warping, color manipulation, object detection, etc.""" @@ -43,6 +43,3 @@ class PyScikitImage(Package): depends_on('py-scipy', type=('build', 'run')) depends_on('py-matplotlib', type=('build', 'run')) depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-scikit-learn/package.py b/var/spack/repos/builtin/packages/py-scikit-learn/package.py index 4a713e6565..7c7102ce41 100644 --- a/var/spack/repos/builtin/packages/py-scikit-learn/package.py +++ b/var/spack/repos/builtin/packages/py-scikit-learn/package.py @@ -25,8 +25,8 @@ from spack import * -class PyScikitLearn(Package): - """""" +class PyScikitLearn(PythonPackage): + """A set of python modules for machine learning and data mining.""" homepage = "https://pypi.python.org/pypi/scikit-learn" url = "https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz" @@ -34,11 +34,6 @@ class PyScikitLearn(Package): version('0.16.1', '363ddda501e3b6b61726aa40b8dbdb7e') version('0.17.1', 'a2f8b877e6d99b1ed737144f5a478dfc') - extends('python') - depends_on('py-setuptools', type='build') depends_on('py-numpy', type=('build', 'run')) depends_on('py-scipy', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-scipy/package.py b/var/spack/repos/builtin/packages/py-scipy/package.py index 509a1f8b94..85b6f631e1 100644 --- a/var/spack/repos/builtin/packages/py-scipy/package.py +++ b/var/spack/repos/builtin/packages/py-scipy/package.py @@ -25,7 +25,7 @@ from spack import * -class PyScipy(Package): +class PyScipy(PythonPackage): """SciPy (pronounced "Sigh Pie") is a Scientific Library for Python. It provides many user-friendly and efficient numerical routines such as routines for numerical integration and optimization.""" @@ -39,16 +39,13 @@ class PyScipy(Package): version('0.15.1', 'be56cd8e60591d6332aac792a5880110') version('0.15.0', '639112f077f0aeb6d80718dc5019dc7a') - extends('python') depends_on('python@2.6:2.8,3.2:') depends_on('py-nose', type='build') # Known not to work with 2.23, 2.25 depends_on('binutils@2.26:', type='build') depends_on('py-numpy@1.7.1:+blas+lapack', type=('build', 'run')) + + # NOTE: scipy picks up Blas/Lapack from numpy, see + # http://www.scipy.org/scipylib/building/linux.html#step-4-build-numpy-1-5-0 depends_on('blas') depends_on('lapack') - - def install(self, spec, prefix): - # NOTE: scipy picks up Blas/Lapack from numpy, see - # http://www.scipy.org/scipylib/building/linux.html#step-4-build-numpy-1-5-0 - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-setuptools/package.py b/var/spack/repos/builtin/packages/py-setuptools/package.py index d696fdf776..d355800958 100644 --- a/var/spack/repos/builtin/packages/py-setuptools/package.py +++ b/var/spack/repos/builtin/packages/py-setuptools/package.py @@ -25,7 +25,7 @@ from spack import * -class PySetuptools(Package): +class PySetuptools(PythonPackage): """A Python utility that aids in the process of downloading, building, upgrading, installing, and uninstalling Python packages.""" @@ -41,8 +41,3 @@ class PySetuptools(Package): version('18.1', 'f72e87f34fbf07f299f6cb46256a0b06') version('16.0', '0ace0b96233516fc5f7c857d086aa3ad') version('11.3.1', '01f69212e019a2420c1693fb43593930') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-shiboken/package.py b/var/spack/repos/builtin/packages/py-shiboken/package.py index c6c23acd33..3ad51d5fc5 100644 --- a/var/spack/repos/builtin/packages/py-shiboken/package.py +++ b/var/spack/repos/builtin/packages/py-shiboken/package.py @@ -26,7 +26,7 @@ from spack import * import os -class PyShiboken(Package): +class PyShiboken(PythonPackage): """Shiboken generates bindings for C++ libraries using CPython.""" homepage = "https://shiboken.readthedocs.org/" url = "https://pypi.python.org/packages/source/S/Shiboken/Shiboken-1.2.2.tar.gz" @@ -35,8 +35,8 @@ class PyShiboken(Package): depends_on('cmake', type='build') - extends('python') depends_on("py-setuptools", type='build') + depends_on("py-sphinx", type=('build', 'run')) depends_on("libxml2") depends_on("qt@:4.8") @@ -63,5 +63,5 @@ class PyShiboken(Package): r'#rpath_cmd(shiboken_path, srcpath)', 'shiboken_postinstall.py') - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix, '--jobs=%s' % make_jobs) + def build_args(self, spec, prefix): + return ['--jobs={0}'.format(make_jobs)] diff --git a/var/spack/repos/builtin/packages/py-simplegeneric/package.py b/var/spack/repos/builtin/packages/py-simplegeneric/package.py index b2ee72822b..3881f8bc88 100644 --- a/var/spack/repos/builtin/packages/py-simplegeneric/package.py +++ b/var/spack/repos/builtin/packages/py-simplegeneric/package.py @@ -25,8 +25,8 @@ from spack import * -class PySimplegeneric(Package): - """Simple generic functions (similar to Python's own len(), +class PySimplegeneric(PythonPackage): + """Simple generic functions (similar to Python's own len(), pickle.dump(), etc.)""" homepage = "https://pypi.python.org/pypi/simplegeneric" @@ -35,9 +35,4 @@ class PySimplegeneric(Package): version('0.8.1', 'f9c1fab00fd981be588fc32759f474e3') version('0.8', 'eaa358a5f9517a8b475d03fbee3ec90f') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-singledispatch/package.py b/var/spack/repos/builtin/packages/py-singledispatch/package.py index 05d8c16b44..9125ecb5f8 100644 --- a/var/spack/repos/builtin/packages/py-singledispatch/package.py +++ b/var/spack/repos/builtin/packages/py-singledispatch/package.py @@ -25,7 +25,7 @@ from spack import * -class PySingledispatch(Package): +class PySingledispatch(PythonPackage): """This library brings functools.singledispatch to Python 2.6-3.3.""" homepage = "https://pypi.python.org/pypi/singledispatch" @@ -33,11 +33,9 @@ class PySingledispatch(Package): version('3.4.0.3', 'af2fc6a3d6cc5a02d0bf54d909785fcb') - extends('python') - depends_on('py-setuptools', type='build') depends_on('py-six') - depends_on('py-ordereddict', when="^python@:2.6.999") - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + # This dependency breaks concretization + # See https://github.com/LLNL/spack/issues/2793 + # depends_on('py-ordereddict', when="^python@:2.6.999", type=('build', 'run')) # noqa diff --git a/var/spack/repos/builtin/packages/py-six/package.py b/var/spack/repos/builtin/packages/py-six/package.py index 6298f39f32..7d653fd102 100644 --- a/var/spack/repos/builtin/packages/py-six/package.py +++ b/var/spack/repos/builtin/packages/py-six/package.py @@ -25,7 +25,7 @@ from spack import * -class PySix(Package): +class PySix(PythonPackage): """Python 2 and 3 compatibility utilities.""" homepage = "https://pypi.python.org/pypi/six" @@ -37,6 +37,3 @@ class PySix(Package): extends('python', ignore=r'bin/pytest') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-sncosmo/package.py b/var/spack/repos/builtin/packages/py-sncosmo/package.py index 6a1fb7c557..f9d2546da3 100644 --- a/var/spack/repos/builtin/packages/py-sncosmo/package.py +++ b/var/spack/repos/builtin/packages/py-sncosmo/package.py @@ -25,7 +25,7 @@ from spack import * -class PySncosmo(Package): +class PySncosmo(PythonPackage): """SNCosmo is a Python library for high-level supernova cosmology analysis.""" @@ -46,6 +46,3 @@ class PySncosmo(Package): depends_on('py-iminuit', type=('build', 'run')) depends_on('py-emcee', type=('build', 'run')) depends_on('py-nestle', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-snowballstemmer/package.py b/var/spack/repos/builtin/packages/py-snowballstemmer/package.py index 44c0548932..cfeeeb26ce 100644 --- a/var/spack/repos/builtin/packages/py-snowballstemmer/package.py +++ b/var/spack/repos/builtin/packages/py-snowballstemmer/package.py @@ -25,7 +25,7 @@ from spack import * -class PySnowballstemmer(Package): +class PySnowballstemmer(PythonPackage): """This package provides 16 stemmer algorithms (15 + Poerter English stemmer) generated from Snowball algorithms.""" @@ -33,8 +33,3 @@ class PySnowballstemmer(Package): url = "https://pypi.python.org/packages/source/s/snowballstemmer/snowballstemmer-1.2.1.tar.gz" version('1.2.1', '643b019667a708a922172e33a99bf2fa') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-sphinx-rtd-theme/package.py b/var/spack/repos/builtin/packages/py-sphinx-rtd-theme/package.py index 9c57628e2c..4b9141d80c 100644 --- a/var/spack/repos/builtin/packages/py-sphinx-rtd-theme/package.py +++ b/var/spack/repos/builtin/packages/py-sphinx-rtd-theme/package.py @@ -25,7 +25,7 @@ from spack import * -class PySphinxRtdTheme(Package): +class PySphinxRtdTheme(PythonPackage): """ReadTheDocs.org theme for Sphinx.""" homepage = "https://pypi.python.org/pypi/sphinx_rtd_theme" @@ -34,9 +34,4 @@ class PySphinxRtdTheme(Package): version('0.1.10a0', '83bd95cae55aa8b773a8cc3a41094282', url="https://pypi.python.org/packages/da/6b/1b75f13d8aa3333f19c6cdf1f0bc9f52ea739cae464fbee050307c121857/sphinx_rtd_theme-0.1.10a0.tar.gz") - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-sphinx/package.py b/var/spack/repos/builtin/packages/py-sphinx/package.py index 48b19d4d7b..b71f2ed8c5 100644 --- a/var/spack/repos/builtin/packages/py-sphinx/package.py +++ b/var/spack/repos/builtin/packages/py-sphinx/package.py @@ -25,7 +25,7 @@ from spack import * -class PySphinx(Package): +class PySphinx(PythonPackage): """Sphinx Documentation Generator.""" homepage = "http://sphinx-doc.org" url = "https://pypi.python.org/packages/source/S/Sphinx/Sphinx-1.3.1.tar.gz" @@ -49,6 +49,3 @@ class PySphinx(Package): depends_on('py-alabaster@0.7:', type=('build', 'run')) depends_on('py-imagesize', when='@1.4:', type=('build', 'run')) depends_on('py-sphinx-rtd-theme@0.1:', type=('build', 'run')) # optional as of 1.4 - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-sqlalchemy/package.py b/var/spack/repos/builtin/packages/py-sqlalchemy/package.py index 73e144b00e..f8221058a0 100644 --- a/var/spack/repos/builtin/packages/py-sqlalchemy/package.py +++ b/var/spack/repos/builtin/packages/py-sqlalchemy/package.py @@ -25,15 +25,10 @@ from spack import * -class PySqlalchemy(Package): +class PySqlalchemy(PythonPackage): """The Python SQL Toolkit and Object Relational Mapper""" homepage = 'http://www.sqlalchemy.org/' url = "https://pypi.python.org/packages/source/S/SQLAlchemy/SQLAlchemy-1.0.12.tar.gz" version('1.0.12', '6d19ef29883bbebdcac6613cf391cac4') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-storm/package.py b/var/spack/repos/builtin/packages/py-storm/package.py index 74fb2add0d..a6c2900414 100644 --- a/var/spack/repos/builtin/packages/py-storm/package.py +++ b/var/spack/repos/builtin/packages/py-storm/package.py @@ -22,19 +22,14 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -from spack import depends_on, extends, version -from spack import Package +from spack import * -class PyStorm(Package): +class PyStorm(PythonPackage): """Storm is an object-relational mapper (ORM) for Python""" homepage = "https://storm.canonical.com/" url = "https://launchpad.net/storm/trunk/0.20/+download/storm-0.20.tar.gz" version('0.20', '8628503141f0f06c0749d607ac09b9c7') - extends('python') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-symengine/package.py b/var/spack/repos/builtin/packages/py-symengine/package.py index 7f7cd84a77..0817d394f2 100644 --- a/var/spack/repos/builtin/packages/py-symengine/package.py +++ b/var/spack/repos/builtin/packages/py-symengine/package.py @@ -25,7 +25,7 @@ from spack import * -class PySymengine(Package): +class PySymengine(PythonPackage): """Python wrappers for SymEngine, a symbolic manipulation library.""" homepage = "https://github.com/symengine/symengine.py" @@ -35,13 +35,11 @@ class PySymengine(Package): version('develop', git='https://github.com/symengine/symengine.py.git') # Build dependencies - extends('python') depends_on('python@2.7:2.8,3.3:') depends_on('py-setuptools', type='build') depends_on('py-cython@0.19.1:') depends_on('cmake@2.8.7:', type='build') depends_on('symengine@0.2.0:') - def install(self, spec, prefix): - python('setup.py', 'install', '--prefix=%s --symengine-dir=%s' % - (prefix, spec['symengine'].prefix)) + def build_args(self, spec, prefix): + return ['--symengine-dir={0}'.format(spec['symengine'].prefix)] diff --git a/var/spack/repos/builtin/packages/py-sympy/package.py b/var/spack/repos/builtin/packages/py-sympy/package.py index 7d1b016263..58c4167e23 100644 --- a/var/spack/repos/builtin/packages/py-sympy/package.py +++ b/var/spack/repos/builtin/packages/py-sympy/package.py @@ -25,7 +25,7 @@ from spack import * -class PySympy(Package): +class PySympy(PythonPackage): """SymPy is a Python library for symbolic mathematics.""" homepage = "https://pypi.python.org/pypi/sympy" url = "https://pypi.python.org/packages/source/s/sympy/sympy-0.7.6.tar.gz" @@ -33,8 +33,4 @@ class PySympy(Package): version('0.7.6', '3d04753974306d8a13830008e17babca') version('1.0', '43e797de799f00f9e8fd2307dba9fab1') - extends('python') depends_on('py-mpmath', when='@1.0:') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-tappy/package.py b/var/spack/repos/builtin/packages/py-tappy/package.py index c195d08fd9..22bc15392f 100644 --- a/var/spack/repos/builtin/packages/py-tappy/package.py +++ b/var/spack/repos/builtin/packages/py-tappy/package.py @@ -25,7 +25,7 @@ from spack import * -class PyTappy(Package): +class PyTappy(PythonPackage): """Python TAP interface module for unit tests""" homepage = "https://github.com/mblayman/tappy" # base https://pypi.python.org/pypi/cffi @@ -33,8 +33,9 @@ class PyTappy(Package): version('1.6', 'c8bdb93ad66e05f939905172a301bedf') - extends('python') - depends_on('py-setuptools', type='build') + extends('python', ignore='bin/nosetests|bin/pygmentize') - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) + depends_on('python@2.6:2.7,3.2:3.4') + depends_on('py-nose', type=('build', 'run')) + depends_on('py-pygments', type=('build', 'run')) + depends_on('py-setuptools', type='build') diff --git a/var/spack/repos/builtin/packages/py-terminado/package.py b/var/spack/repos/builtin/packages/py-terminado/package.py index e9db560cd5..4cebe14fca 100644 --- a/var/spack/repos/builtin/packages/py-terminado/package.py +++ b/var/spack/repos/builtin/packages/py-terminado/package.py @@ -25,7 +25,7 @@ from spack import * -class PyTerminado(Package): +class PyTerminado(PythonPackage): """Terminals served to term.js using Tornado websockets""" homepage = "https://pypi.python.org/pypi/terminado" @@ -33,11 +33,6 @@ class PyTerminado(Package): version('0.6', '5b6c65da27fe1ed07a9f80f0588cdaba') - extends('python') - depends_on('py-setuptools', type='build') - depends_on('py-tornado@4:') - depends_on('py-ptyprocess') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + depends_on('py-tornado@4:', type=('build', 'run')) + depends_on('py-ptyprocess', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-tornado/package.py b/var/spack/repos/builtin/packages/py-tornado/package.py index 0de77a2d57..eb9c660947 100644 --- a/var/spack/repos/builtin/packages/py-tornado/package.py +++ b/var/spack/repos/builtin/packages/py-tornado/package.py @@ -25,25 +25,24 @@ from spack import * -class PyTornado(Package): +class PyTornado(PythonPackage): """Tornado is a Python web framework and asynchronous networking library.""" homepage = "https://github.com/tornadoweb/tornado" - # base https://pypi.python.org/pypi/tornado/ url = "https://github.com/tornadoweb/tornado/archive/v4.4.0.tar.gz" version('4.4.0', 'c28675e944f364ee96dda3a8d2527a87ed28cfa3') - - extends('python') - + depends_on('py-setuptools', type='build') - + # requirements from setup.py - depends_on('py-backports-ssl-match-hostname', when='^python@:2.7.8') - depends_on('py-singledispatch', when='^python@:3.3') - depends_on('py-certifi', when='^python@:3.3') - depends_on('py-backports-abc@0.4:', when='^python@:3.4') - - def install(self, spec, prefix): - setup_py('build') - setup_py('install', '--prefix={0}'.format(prefix)) + # These dependencies breaks concretization + # See https://github.com/LLNL/spack/issues/2793 + # depends_on('py-backports-ssl-match-hostname', when='^python@:2.7.8', type=('build', 'run')) # noqa + # depends_on('py-singledispatch', when='^python@:3.3', type=('build', 'run')) # noqa + # depends_on('py-certifi', when='^python@:3.3', type=('build', 'run')) + # depends_on('py-backports-abc@0.4:', when='^python@:3.4', type=('build', 'run')) # noqa + depends_on('py-backports-ssl-match-hostname', type=('build', 'run')) + depends_on('py-singledispatch', type=('build', 'run')) + depends_on('py-certifi', type=('build', 'run')) + depends_on('py-backports-abc@0.4:', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-traitlets/package.py b/var/spack/repos/builtin/packages/py-traitlets/package.py index 2a087dffb9..debd1dca43 100644 --- a/var/spack/repos/builtin/packages/py-traitlets/package.py +++ b/var/spack/repos/builtin/packages/py-traitlets/package.py @@ -25,7 +25,7 @@ from spack import * -class PyTraitlets(Package): +class PyTraitlets(PythonPackage): """Traitlets Python config system""" homepage = "https://pypi.python.org/pypi/traitlets" @@ -40,12 +40,11 @@ class PyTraitlets(Package): version('4.0.0', 'b5b95ea5941fd9619b4704dfd8201568') version('4.0', '14544e25ccf8e920ed1cbf833852481f') - extends('python') - depends_on('py-setuptools', type='build') depends_on('py-decorator', type=('build', 'run')) - depends_on('py-ipython-genutils') - depends_on('py-enum34', when='^python@:3.3') + depends_on('py-ipython-genutils', type=('build', 'run')) - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + # This dependency breaks concretization + # See https://github.com/LLNL/spack/issues/2793 + # depends_on('py-enum34', when='^python@:3.3', type=('build', 'run')) + depends_on('py-enum34', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-tuiview/package.py b/var/spack/repos/builtin/packages/py-tuiview/package.py index 5ce2043fb3..93726cf004 100644 --- a/var/spack/repos/builtin/packages/py-tuiview/package.py +++ b/var/spack/repos/builtin/packages/py-tuiview/package.py @@ -25,7 +25,7 @@ from spack import * -class PyTuiview(Package): +class PyTuiview(PythonPackage): """TuiView is a lightweight raster GIS with powerful raster attribute table manipulation abilities. """ @@ -35,10 +35,6 @@ class PyTuiview(Package): version('1.1.7', '4b3b38a820cc239c8ab4a181ac5d4c30') - extends("python") depends_on("py-pyqt", type=('build', 'run')) depends_on("py-numpy", type=('build', 'run')) depends_on("gdal") - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-twisted/package.py b/var/spack/repos/builtin/packages/py-twisted/package.py index 80023c2123..e558adbc7f 100644 --- a/var/spack/repos/builtin/packages/py-twisted/package.py +++ b/var/spack/repos/builtin/packages/py-twisted/package.py @@ -25,7 +25,7 @@ from spack import * -class PyTwisted(Package): +class PyTwisted(PythonPackage): """An asynchronous networking framework written in Python""" homepage = "https://twistedmatrix.com/" url = "https://pypi.python.org/packages/source/T/Twisted/Twisted-15.3.0.tar.bz2" @@ -34,8 +34,3 @@ class PyTwisted(Package): version('15.3.0', 'b58e83da2f00b3352afad74d0c5c4599') depends_on('py-setuptools', type='build') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-unittest2/package.py b/var/spack/repos/builtin/packages/py-unittest2/package.py index ddd50a37d4..d6a68c3535 100644 --- a/var/spack/repos/builtin/packages/py-unittest2/package.py +++ b/var/spack/repos/builtin/packages/py-unittest2/package.py @@ -25,7 +25,7 @@ from spack import * -class PyUnittest2(Package): +class PyUnittest2(PythonPackage): """unittest2 is a backport of the new features added to the unittest testing framework in Python 2.7 and onwards.""" @@ -34,8 +34,4 @@ class PyUnittest2(Package): version('1.1.0', 'f72dae5d44f091df36b6b513305ea000') - extends('python') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-unittest2py3k/package.py b/var/spack/repos/builtin/packages/py-unittest2py3k/package.py index 4aee545d74..03134acfcd 100644 --- a/var/spack/repos/builtin/packages/py-unittest2py3k/package.py +++ b/var/spack/repos/builtin/packages/py-unittest2py3k/package.py @@ -25,7 +25,7 @@ from spack import * -class PyUnittest2py3k(Package): +class PyUnittest2py3k(PythonPackage): """unittest2 is a backport of the new features added to the unittest testing framework in Python 2.7 and 3.2. This is a Python 3 compatible version of unittest2.""" @@ -35,8 +35,5 @@ class PyUnittest2py3k(Package): version('0.5.1', '8824ff92044310d9365f90d892bf0f09') - extends('python') + depends_on('python@3:') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-urwid/package.py b/var/spack/repos/builtin/packages/py-urwid/package.py index 61dec3f1cd..8e33d2bef2 100644 --- a/var/spack/repos/builtin/packages/py-urwid/package.py +++ b/var/spack/repos/builtin/packages/py-urwid/package.py @@ -25,7 +25,7 @@ from spack import * -class PyUrwid(Package): +class PyUrwid(PythonPackage): """A full-featured console UI library""" homepage = "http://urwid.org/" url = "https://pypi.python.org/packages/source/u/urwid/urwid-1.3.0.tar.gz" @@ -33,8 +33,3 @@ class PyUrwid(Package): version('1.3.0', 'a989acd54f4ff1a554add464803a9175') depends_on('py-setuptools', type='build') - - extends("python") - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-vcversioner/package.py b/var/spack/repos/builtin/packages/py-vcversioner/package.py index 246a3b7b43..81e4f7bdda 100644 --- a/var/spack/repos/builtin/packages/py-vcversioner/package.py +++ b/var/spack/repos/builtin/packages/py-vcversioner/package.py @@ -25,17 +25,12 @@ from spack import * -class PyVcversioner(Package): +class PyVcversioner(PythonPackage): """Vcversioner: Take version numbers from version control.""" homepage = "https://github.com/habnabit/vcversioner" - # base https://pypi.python.org/pypi/vcversioner/ url = "https://pypi.python.org/packages/source/v/vcversioner/vcversioner-2.16.0.0.tar.gz" version('2.16.0.0', 'aab6ef5e0cf8614a1b1140ed5b7f107d') - extends('python') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-virtualenv/package.py b/var/spack/repos/builtin/packages/py-virtualenv/package.py index f373067144..5e6431b637 100644 --- a/var/spack/repos/builtin/packages/py-virtualenv/package.py +++ b/var/spack/repos/builtin/packages/py-virtualenv/package.py @@ -25,7 +25,7 @@ from spack import * -class PyVirtualenv(Package): +class PyVirtualenv(PythonPackage): """virtualenv is a tool to create isolated Python environments.""" homepage = "http://virtualenv.readthedocs.org/projects/virtualenv/" url = "https://pypi.python.org/packages/source/v/virtualenv/virtualenv-1.11.6.tar.gz" @@ -34,8 +34,4 @@ class PyVirtualenv(Package): version('13.0.1', '1ffc011bde6667f0e37ecd976f4934db') version('15.0.1', '28d76a0d9cbd5dc42046dd14e76a6ecc') - extends('python') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-wcsaxes/package.py b/var/spack/repos/builtin/packages/py-wcsaxes/package.py index f7b5c13a13..be1d151ee9 100644 --- a/var/spack/repos/builtin/packages/py-wcsaxes/package.py +++ b/var/spack/repos/builtin/packages/py-wcsaxes/package.py @@ -25,7 +25,7 @@ from spack import * -class PyWcsaxes(Package): +class PyWcsaxes(PythonPackage): """WCSAxes is a framework for making plots of Astronomical data in Matplotlib.""" @@ -34,10 +34,7 @@ class PyWcsaxes(Package): version('0.8', 'de1c60fdae4c330bf5ddb9f1ab5ab920') - extends('python', ignore=r'bin/pbr') + extends('python', ignore=r'bin/') depends_on('py-numpy', type=('build', 'run')) depends_on('py-matplotlib', type=('build', 'run')) depends_on('py-astropy', type=('build', 'run')) - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-wcwidth/package.py b/var/spack/repos/builtin/packages/py-wcwidth/package.py index 2740d749b5..c4846e2ee7 100644 --- a/var/spack/repos/builtin/packages/py-wcwidth/package.py +++ b/var/spack/repos/builtin/packages/py-wcwidth/package.py @@ -25,7 +25,7 @@ from spack import * -class PyWcwidth(Package): +class PyWcwidth(PythonPackage): """Measures number of Terminal column cells of wide-character codes""" homepage = "https://pypi.python.org/pypi/wcwidth" @@ -33,9 +33,4 @@ class PyWcwidth(Package): version('0.1.7', 'b3b6a0a08f0c8a34d1de8cf44150a4ad') - extends('python') - depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/py-wheel/package.py b/var/spack/repos/builtin/packages/py-wheel/package.py index ce495bf6d0..7e678df2e8 100644 --- a/var/spack/repos/builtin/packages/py-wheel/package.py +++ b/var/spack/repos/builtin/packages/py-wheel/package.py @@ -25,7 +25,7 @@ from spack import * -class PyWheel(Package): +class PyWheel(PythonPackage): """A built-package format for Python.""" homepage = "https://pypi.python.org/pypi/wheel" @@ -33,8 +33,4 @@ class PyWheel(Package): version('0.26.0', '4cfc6e7e3dc7377d0164914623922a10') - extends('python') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-widgetsnbextension/package.py b/var/spack/repos/builtin/packages/py-widgetsnbextension/package.py index c0833806f8..916263bda6 100644 --- a/var/spack/repos/builtin/packages/py-widgetsnbextension/package.py +++ b/var/spack/repos/builtin/packages/py-widgetsnbextension/package.py @@ -25,7 +25,7 @@ from spack import * -class PyWidgetsnbextension(Package): +class PyWidgetsnbextension(PythonPackage): """IPython HTML widgets for Jupyter""" homepage = "https://pypi.python.org/pypi/widgetsnbextension" @@ -33,11 +33,6 @@ class PyWidgetsnbextension(Package): version('1.2.6', '0aa4e152c9ba2d704389dc2453f448c7') - extends('python') - depends_on('py-setuptools', type='build') depends_on('python@2.7:2.7.999,3.3:') - depends_on('py-jupyter-notebook@4.2.0:') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) + depends_on('py-jupyter-notebook@4.2.0:', type=('build', 'run')) diff --git a/var/spack/repos/builtin/packages/py-xlrd/package.py b/var/spack/repos/builtin/packages/py-xlrd/package.py index 9638b8a36b..bbd2f57b07 100644 --- a/var/spack/repos/builtin/packages/py-xlrd/package.py +++ b/var/spack/repos/builtin/packages/py-xlrd/package.py @@ -25,7 +25,7 @@ from spack import * -class PyXlrd(Package): +class PyXlrd(PythonPackage): """Library for developers to extract data from Microsoft Excel (tm) spreadsheet files""" @@ -33,8 +33,3 @@ class PyXlrd(Package): url = "https://pypi.python.org/packages/source/x/xlrd/xlrd-0.9.4.tar.gz" version('0.9.4', '911839f534d29fe04525ef8cd88fe865') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-yapf/package.py b/var/spack/repos/builtin/packages/py-yapf/package.py index eab4d54abc..5f5d32e3d0 100644 --- a/var/spack/repos/builtin/packages/py-yapf/package.py +++ b/var/spack/repos/builtin/packages/py-yapf/package.py @@ -25,7 +25,7 @@ from spack import * -class PyYapf(Package): +class PyYapf(PythonPackage): """ Yet Another Python Formatter """ homepage = "https://github.com/google/yapf" # base https://pypi.python.org/pypi/cffi @@ -33,8 +33,4 @@ class PyYapf(Package): version('0.2.1', '348ccf86cf2057872e4451b204fb914c') - extends('python') depends_on('py-setuptools', type='build') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/py-yt/package.py b/var/spack/repos/builtin/packages/py-yt/package.py index cf35912191..6ab967d8a5 100644 --- a/var/spack/repos/builtin/packages/py-yt/package.py +++ b/var/spack/repos/builtin/packages/py-yt/package.py @@ -26,7 +26,7 @@ from spack import * -class PyYt(Package): +class PyYt(PythonPackage): """Volumetric Data Analysis yt is a python package for analyzing and visualizing @@ -54,8 +54,6 @@ class PyYt(Package): variant("h5py", default=True, description="enable h5py support") variant("scipy", default=True, description="enable scipy support") - extends("python") - depends_on("py-astropy", type=('build', 'run'), when="+astropy") depends_on("py-cython", type=('build', 'run')) depends_on("py-h5py", type=('build', 'run'), when="+h5py") @@ -67,12 +65,9 @@ class PyYt(Package): depends_on("py-sympy", type=('build', 'run')) depends_on("python @2.7:2.999,3.4:") - def install(self, spec, prefix): - setup_py("install", "--prefix=%s" % prefix) - self.check_install(spec, prefix) - - def check_install(self, spec, prefix): + @PythonPackage.sanity_check('install') + def check_install(self): # The Python interpreter path can be too long for this # yt = Executable(join_path(prefix.bin, "yt")) # yt("--help") - python(join_path(prefix.bin, "yt"), "--help") + python(join_path(self.prefix.bin, "yt"), "--help") diff --git a/var/spack/repos/builtin/packages/py-zmq/package.py b/var/spack/repos/builtin/packages/py-zmq/package.py index ff2373c2f4..cbc0e02e6e 100644 --- a/var/spack/repos/builtin/packages/py-zmq/package.py +++ b/var/spack/repos/builtin/packages/py-zmq/package.py @@ -25,21 +25,16 @@ from spack import * -class PyZmq(Package): +class PyZmq(PythonPackage): """PyZMQ: Python bindings for zeromq.""" homepage = "https://github.com/zeromq/pyzmq" - # base https://pypi.python.org/pypi/pyzmq/ url = "https://github.com/zeromq/pyzmq/archive/v14.7.0.tar.gz" version('16.0.2', '4cf14a2995742253b2b009541f4436f4') version('14.7.0', 'bf304fb73d72aee314ff82d3554328c179938ecf') - extends('python') depends_on('py-setuptools', type='build') - depends_on('py-cython@0.16:') - depends_on('py-py') - depends_on('py-cffi') + depends_on('py-cython@0.16:', type=('build', 'run')) + depends_on('py-py', type=('build', 'run')) + depends_on('py-cffi', type=('build', 'run')) depends_on('zeromq') - - def install(self, spec, prefix): - setup_py('install', '--prefix={0}'.format(prefix)) diff --git a/var/spack/repos/builtin/packages/python/package.py b/var/spack/repos/builtin/packages/python/package.py index 7a5904ddd9..348b075e2f 100644 --- a/var/spack/repos/builtin/packages/python/package.py +++ b/var/spack/repos/builtin/packages/python/package.py @@ -99,6 +99,11 @@ class Python(Package): r'\1setup.py\2 --no-user-cfg \3\6' ) + @when('@:2.6,3.0:3.3') + def patch(self): + # See https://github.com/LLNL/spack/issues/1490 + pass + def install(self, spec, prefix): # TODO: The '--no-user-cfg' option for Python installation is only in # Python v2.7 and v3.4+ (see https://bugs.python.org/issue1180) and diff --git a/var/spack/repos/builtin/packages/scons/package.py b/var/spack/repos/builtin/packages/scons/package.py index d20e529384..54f894da6f 100644 --- a/var/spack/repos/builtin/packages/scons/package.py +++ b/var/spack/repos/builtin/packages/scons/package.py @@ -25,14 +25,9 @@ from spack import * -class Scons(Package): +class Scons(PythonPackage): """SCons is a software construction tool""" homepage = "http://scons.org" url = "http://downloads.sourceforge.net/project/scons/scons/2.5.0/scons-2.5.0.tar.gz" version('2.5.0', '9e00fa0df8f5ca5c5f5975b40e0ed354') - - extends('python') - - def install(self, spec, prefix): - setup_py('install', '--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/udunits2/package.py b/var/spack/repos/builtin/packages/udunits2/package.py index 57d18e1ea4..cfc8e30c41 100644 --- a/var/spack/repos/builtin/packages/udunits2/package.py +++ b/var/spack/repos/builtin/packages/udunits2/package.py @@ -29,9 +29,9 @@ class Udunits2(AutotoolsPackage): """Automated units conversion""" homepage = "http://www.unidata.ucar.edu/software/udunits" - url = "ftp://ftp.unidata.ucar.edu/pub/udunits/udunits-2.2.20.tar.gz" + url = "ftp://ftp.unidata.ucar.edu/pub/udunits/udunits-2.2.21.tar.gz" - version('2.2.20', '1586b70a49dfe05da5fcc29ef239dce0') + version('2.2.21', '1f6d3375efc1f124790a4efb7102cdb7') depends_on('expat') |