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| author | James Beal <james.beal+github@sanger.ac.uk> | 2023-12-19 11:13:57 +0000 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-12-19 12:13:57 +0100 |
| commit | f1fdaca34560849eeac0fa337f37d5b792ae7353 (patch) | |
| tree | d654b1d6a8a815387fd62e0abcde0104aaad472f | |
| parent | d4454e54dc124058a6587eb901f65ac974758e11 (diff) | |
| download | spack-f1fdaca34560849eeac0fa337f37d5b792ae7353.tar.gz spack-f1fdaca34560849eeac0fa337f37d5b792ae7353.tar.bz2 spack-f1fdaca34560849eeac0fa337f37d5b792ae7353.tar.xz spack-f1fdaca34560849eeac0fa337f37d5b792ae7353.zip | |
samtools: add v1.19 (#41634)
Co-authored-by: James Beal <jb23@sanger.ac.uk>
| -rw-r--r-- | var/spack/repos/builtin/packages/bcftools/package.py | 8 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/htslib/package.py | 1 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/samtools/package.py | 2 |
3 files changed, 11 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/bcftools/package.py b/var/spack/repos/builtin/packages/bcftools/package.py index 057d384b1a..cb326cd28e 100644 --- a/var/spack/repos/builtin/packages/bcftools/package.py +++ b/var/spack/repos/builtin/packages/bcftools/package.py @@ -13,9 +13,14 @@ class Bcftools(AutotoolsPackage): commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.""" + maintainers("jbeal-work") + homepage = "https://samtools.github.io/bcftools/" url = "https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2" + version("1.19", sha256="782b5f1bc690415192231e82213b3493b047f45e630dc8ef6f154d6126ab3e68") + version("1.18", sha256="d9b9d36293e4cc62ab7473aa2539389d4e1de79b1a927d483f6e91f3c3ceac7e") + version("1.17", sha256="01f75d8e701d85b2c759172412009cc04f29b61616ace2fa75116123de4596cc") version("1.16", sha256="293010736b076cf684d2873928924fcc3d2c231a091084c2ac23a8045c7df982") version("1.15.1", sha256="f21f9564873eb27ccf22d13b91a64acb8fbbfe4f9e4c37933a54b9a95857f2d7") version("1.14", sha256="b7ef88ae89fcb55658c5bea2e8cb8e756b055e13860036d6be13756782aa19cb") @@ -48,6 +53,9 @@ class Bcftools(AutotoolsPackage): depends_on("perl", when="@1.8:~perl-filters", type="run") depends_on("perl", when="@1.8:+perl-filters", type=("build", "run")) + depends_on("htslib@1.19", when="@1.19") + depends_on("htslib@1.18", when="@1.18") + depends_on("htslib@1.17", when="@1.17") depends_on("htslib@1.16", when="@1.16") depends_on("htslib@1.15", when="@1.15") depends_on("htslib@1.14", when="@1.14") diff --git a/var/spack/repos/builtin/packages/htslib/package.py b/var/spack/repos/builtin/packages/htslib/package.py index ff8bc77932..18128d6f14 100644 --- a/var/spack/repos/builtin/packages/htslib/package.py +++ b/var/spack/repos/builtin/packages/htslib/package.py @@ -14,6 +14,7 @@ class Htslib(AutotoolsPackage): homepage = "https://github.com/samtools/htslib" url = "https://github.com/samtools/htslib/releases/download/1.13/htslib-1.13.tar.bz2" + version("1.19", sha256="8751c40c4fa7d1f23a6864c5b20a73744f8be68239535ae7729c5f7d394d0736") version("1.18", sha256="f1ab53a593a2320a1bfadf4ef915dae784006c5b5c922c8a8174d7530a9af18f") version("1.17", sha256="763779288c40f07646ec7ad98b96c378c739171d162ad98398868783b721839f") version("1.16", sha256="606b7c7aff73734cf033ecd156f40529fa5792f54524952a28938ca0890d7924") diff --git a/var/spack/repos/builtin/packages/samtools/package.py b/var/spack/repos/builtin/packages/samtools/package.py index 4d2e4e17ef..8d8772cdd0 100644 --- a/var/spack/repos/builtin/packages/samtools/package.py +++ b/var/spack/repos/builtin/packages/samtools/package.py @@ -16,6 +16,7 @@ class Samtools(Package): homepage = "https://www.htslib.org" url = "https://github.com/samtools/samtools/releases/download/1.13/samtools-1.13.tar.bz2" + version("1.19", sha256="fa6b3b18e20851b6f3cb55afaf3205d02fcb79dae3b849fcf52e8fc10ff08b83") version("1.18", sha256="d686ffa621023ba61822a2a50b70e85d0b18e79371de5adb07828519d3fc06e1") version("1.17", sha256="3adf390b628219fd6408f14602a4c4aa90e63e18b395dad722ab519438a2a729") version("1.16.1", sha256="2fa0a25f78594cf23d07c9d32d5060a14f1c5ee14d7b0af7a8a71abc9fdf1d07") @@ -46,6 +47,7 @@ class Samtools(Package): depends_on("python", type="run") # htslib became standalone @1.3.1, must use corresponding version + depends_on("htslib@1.19", when="@1.19") depends_on("htslib@1.18", when="@1.18") depends_on("htslib@1.17", when="@1.17") depends_on("htslib@1.16", when="@1.16.1") |