Nextflow, Tower Agent, Tower CLI: updates (#34515)

* renamed tower-agent and tower-cli with prefif nf-

* new nextflow package version

* added newest versions (today) for nf-tower-agent and nf-tower-cli

5 files changed, 150 insertions, 1 deletions

diff --git a/var/spack/repos/builtin/packages/nextflow/package.py b/var/spack/repos/builtin/packages/nextflow/package.py
index 04b2e84ae6..1c2a239f7c 100644
--- a/var/spack/repos/builtin/packages/nextflow/package.py
+++ b/var/spack/repos/builtin/packages/nextflow/package.py
@@ -12,9 +12,19 @@ class Nextflow(Package):
     homepage = "https://www.nextflow.io"
     url = "https://github.com/nextflow-io/nextflow/releases/download/v21.04.3/nextflow"
 
-    maintainers = ["dialvarezs"]
+    maintainers = ["dialvarezs", "marcodelapierre"]
 
     version(
+        "22.10.4",
+        sha256="612a085e183546688e0733ebf342fb73865f560ad1315d999354048fbca5954d",
+        expand=False,
+    )
+    version(
+        "22.10.3",
+        sha256="8d67046ca3b645fab2642d90848550a425c9905fd7dfc2b4753b8bcaccaa70dd",
+        expand=False,
+    )
+    version(
         "22.10.1",
         sha256="fa6b6faa8b213860212da413e77141a56a5e128662d21ea6603aeb9717817c4c",
         expand=False,
diff --git a/var/spack/repos/builtin/packages/nf-tower-agent/package.py b/var/spack/repos/builtin/packages/nf-tower-agent/package.py
new file mode 100644
index 0000000000..82bfe3764e
--- /dev/null
+++ b/var/spack/repos/builtin/packages/nf-tower-agent/package.py
@@ -0,0 +1,44 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+import platform
+
+from spack.package import *
+
+
+class NfTowerAgent(Package):
+    """Tower Agent allows Nextflow Tower to launch pipelines
+    on HPC clusters that do not allow direct access through
+    an SSH client.
+    """
+
+    homepage = "https://github.com/seqeralabs/tower-agent"
+    maintainers = ["marcodelapierre"]
+
+    if platform.machine() == "x86_64":
+        if platform.system() == "Linux":
+            version(
+                "0.5.0",
+                sha256="887f85aa9bb4688839c04b40887ce6446822ada7bdd858ec105cf44641ec8d2d",
+                url="https://github.com/seqeralabs/tower-agent/releases/download/v0.5.0/tw-agent-linux-x86_64",
+                expand=False,
+            )
+            version(
+                "0.4.5",
+                sha256="d3f38931ff769299b9f9f7e78d9f6a55f93914878c09117b8eaf5decd0c734ec",
+                url="https://github.com/seqeralabs/tower-agent/releases/download/v0.4.5/tw-agent-linux-x86_64",
+                expand=False,
+            )
+            version(
+                "0.4.3",
+                sha256="1125e64d4e3342e77fcf7f6827f045e421084654fe8faafd5389e356e0613cc0",
+                url="https://github.com/seqeralabs/tower-agent/releases/download/v0.4.3/tw-agent-linux-x86_64",
+                expand=False,
+            )
+
+    def install(self, spec, prefix):
+        mkdirp(prefix.bin)
+        install(self.stage.archive_file, join_path(prefix.bin, "tw-agent"))
+        set_executable(join_path(prefix.bin, "tw-agent"))
diff --git a/var/spack/repos/builtin/packages/nf-tower-cli/package.py b/var/spack/repos/builtin/packages/nf-tower-cli/package.py
new file mode 100644
index 0000000000..824fad23d2
--- /dev/null
+++ b/var/spack/repos/builtin/packages/nf-tower-cli/package.py
@@ -0,0 +1,87 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+import platform
+
+from spack.package import *
+
+
+class NfTowerCli(Package):
+    """Tower on the Command Line brings Nextflow Tower concepts
+    including Pipelines, Actions and Compute Environments
+    to the terminal.
+    """
+
+    homepage = "https://github.com/seqeralabs/tower-cli"
+    maintainers = ["marcodelapierre"]
+
+    if platform.machine() == "x86_64":
+        if platform.system() == "Darwin":
+            version(
+                "0.7.2",
+                sha256="b72093af9c8d61e0150eb9d56cedb67afc982d2432221ae0819aaa0c8826ff2b",
+                url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.2/tw-0.7.2-osx-x86_64",
+                expand=False,
+            )
+            version(
+                "0.7.1",
+                sha256="a4731d0d7f2c2d4219758126a8ee0b22a0a68464329d4be0a025ad7eb191e5c0",
+                url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.1/tw-0.7.1-osx-x86_64",
+                expand=False,
+            )
+            version(
+                "0.7.0",
+                sha256="b1b3ade4231de2c7303832bac406510c9de171d07d6384a54945903f5123f772",
+                url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.0/tw-0.7.0-osx-x86_64",
+                expand=False,
+            )
+            version(
+                "0.6.5",
+                sha256="8e7369611f3617bad3e76264d93fe467c6039c86af9f18e26142dee5df1e7346",
+                url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.5/tw-0.6.5-osx-x86_64",
+                expand=False,
+            )
+            version(
+                "0.6.2",
+                sha256="2bcc17687d58d4c888e8d57b7f2f769a2940afb3266dc3c6c48b0af0cb490d91",
+                url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.2/tw-0.6.2-osx-x86_64",
+                expand=False,
+            )
+        elif platform.system() == "Linux":
+            version(
+                "0.7.2",
+                sha256="a66d1655d2f3d83db160a890e6b3f20f4573978aa9e8ea5d6e505958a2980e72",
+                url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.2/tw-0.7.2-linux-x86_64",
+                expand=False,
+            )
+            version(
+                "0.7.1",
+                sha256="f3f8cf6b241f8935d4d90bd271809ca4cd7157ac476822483f458edbe54a1fa8",
+                url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.1/tw-0.7.1-linux-x86_64",
+                expand=False,
+            )
+            version(
+                "0.7.0",
+                sha256="651f564b80585c9060639f1a8fc82966f81becb0ab3e3ba34e53baf3baabff39",
+                url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.0/tw-0.7.0-linux-x86_64",
+                expand=False,
+            )
+            version(
+                "0.6.5",
+                sha256="0d1f3a6f53694000c1764bd3b40ce141f4b8923d477e2bdfdce75c66de95be00",
+                url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.5/tw-0.6.5-linux-x86_64",
+                expand=False,
+            )
+            version(
+                "0.6.2",
+                sha256="02c6d141416b046b6e8b6f9723331fe0e39d37faa3561c47c152df4d33b37e50",
+                url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.2/tw-0.6.2-linux-x86_64",
+                expand=False,
+            )
+
+    def install(self, spec, prefix):
+        mkdirp(prefix.bin)
+        install(self.stage.archive_file, join_path(prefix.bin, "tw"))
+        set_executable(join_path(prefix.bin, "tw"))
diff --git a/var/spack/repos/builtin/packages/tower-agent/package.py b/var/spack/repos/builtin/packages/tower-agent/package.py
index e4ec5103cc..9f7eb51f73 100644
--- a/var/spack/repos/builtin/packages/tower-agent/package.py
+++ b/var/spack/repos/builtin/packages/tower-agent/package.py
@@ -22,12 +22,14 @@ class TowerAgent(Package):
             version(
                 "0.4.5",
                 sha256="d3f38931ff769299b9f9f7e78d9f6a55f93914878c09117b8eaf5decd0c734ec",
+                deprecated=True,
                 url="https://github.com/seqeralabs/tower-agent/releases/download/v0.4.5/tw-agent-linux-x86_64",
                 expand=False,
             )
             version(
                 "0.4.3",
                 sha256="1125e64d4e3342e77fcf7f6827f045e421084654fe8faafd5389e356e0613cc0",
+                deprecated=True,
                 url="https://github.com/seqeralabs/tower-agent/releases/download/v0.4.3/tw-agent-linux-x86_64",
                 expand=False,
             )
diff --git a/var/spack/repos/builtin/packages/tower-cli/package.py b/var/spack/repos/builtin/packages/tower-cli/package.py
index ed878fe7b4..020c0fce8f 100644
--- a/var/spack/repos/builtin/packages/tower-cli/package.py
+++ b/var/spack/repos/builtin/packages/tower-cli/package.py
@@ -22,18 +22,21 @@ class TowerCli(Package):
             version(
                 "0.7.0",
                 sha256="b1b3ade4231de2c7303832bac406510c9de171d07d6384a54945903f5123f772",
+                deprecated=True,
                 url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.0/tw-0.7.0-osx-x86_64",
                 expand=False,
             )
             version(
                 "0.6.5",
                 sha256="8e7369611f3617bad3e76264d93fe467c6039c86af9f18e26142dee5df1e7346",
+                deprecated=True,
                 url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.5/tw-0.6.5-osx-x86_64",
                 expand=False,
             )
             version(
                 "0.6.2",
                 sha256="2bcc17687d58d4c888e8d57b7f2f769a2940afb3266dc3c6c48b0af0cb490d91",
+                deprecated=True,
                 url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.2/tw-0.6.2-osx-x86_64",
                 expand=False,
             )
@@ -41,18 +44,21 @@ class TowerCli(Package):
             version(
                 "0.7.0",
                 sha256="651f564b80585c9060639f1a8fc82966f81becb0ab3e3ba34e53baf3baabff39",
+                deprecated=True,
                 url="https://github.com/seqeralabs/tower-cli/releases/download/v0.7.0/tw-0.7.0-linux-x86_64",
                 expand=False,
             )
             version(
                 "0.6.5",
                 sha256="0d1f3a6f53694000c1764bd3b40ce141f4b8923d477e2bdfdce75c66de95be00",
+                deprecated=True,
                 url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.5/tw-0.6.5-linux-x86_64",
                 expand=False,
             )
             version(
                 "0.6.2",
                 sha256="02c6d141416b046b6e8b6f9723331fe0e39d37faa3561c47c152df4d33b37e50",
+                deprecated=True,
                 url="https://github.com/seqeralabs/tower-cli/releases/download/v0.6.2/tw-0.6.2-linux-x86_64",
                 expand=False,
             )