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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Cleaveland4(Package):
"""CleaveLand4: Analysis of degradome data to find sliced miRNA and siRNA
targets"""
homepage = "https://github.com/MikeAxtell/CleaveLand4"
url = "https://github.com/MikeAxtell/CleaveLand4/archive/v4.4.tar.gz"
license("GPL-3.0-or-later")
version("4.5", sha256="d0ad584a8bc2391cdee5f6279b2351f7db972362669467564e6bd3f94dcd9dd1")
version("4.4", sha256="bf7fe6ad730ea2bfb2e0c0f863734f189073a69b1754532012f1261b368b24e7")
depends_on("perl", type=("build", "run"))
depends_on("perl-math-cdf", type=("build", "run"))
depends_on("bowtie")
depends_on("viennarna")
depends_on("r", type=("build", "run"))
depends_on("samtools")
def install(self, spec, prefix):
mkdirp(prefix.bin)
install("CleaveLand4.pl", prefix.bin)
with working_dir("GSTAr_v1-0"):
install("GSTAr.pl", prefix.bin)
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