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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Msmc2(MakefilePackage):
"""
This program implements MSMC2, a method to infer population size history
and population separation history from whole genome sequencing data.
"""
homepage = "https://github.com/stschiff/msmc2"
url = "https://github.com/stschiff/msmc2/archive/v2.1.1.tar.gz"
maintainers("robqiao")
license("GPL-3.0-or-later")
version("2.1.4", sha256="e513723b9e956f01de8de89ff6d32c071f509512425185d12faa5bb76cf440d0")
version("2.1.2", sha256="c8c2b6ed6ef1b5d6e6e15ec0d968288e5bdae2bea1f3b4ec790f599e96bb26cd")
version("2.1.1", sha256="151dd75a8b0371ff94eed9504a7a73a2924e10466de30c230c1bb3c35a1a0913")
version("2.0.2", sha256="91152b2494342148ff84a1e5c6d2f5f0d53acba12722cd68ff5807ba4e82af55")
version("2.0.1", sha256="97e859e6f08689baf29d3c61b6904cfa5a292f8ce7b3532e055ce3047d8472f4")
version("2.0.0", sha256="9de38239f6e729a0f6f492ca671e2e70541eb5db558d816e64184c06611a1c7e")
depends_on("gsl", type=("build", "run"))
depends_on("dmd@:2.081.0", type="build")
def edit(self, spec, prefix):
# Set DMD compiler
filter_file(
"dmd", join_path(self.spec["dmd"].prefix.linux.bin64, "dmd"), "Makefile", string=True
)
gsllibdir = spec["gsl"].libs.directories[0]
# Set GSLDIR
filter_file(
"GSLDIR=/usr/local/lib", "GSLDIR={0}".format(gsllibdir), "Makefile", string=True
)
def install(self, spec, prefix):
install_tree("build/release", prefix.bin)
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