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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
import platform
from spack.package import *
# If you need to add a new version, please be aware that:
# - versions in the following dict are automatically added to the package
# - version tuple must be in the form (checksum, url)
# - checksum must be sha256
# - package key must be in the form '{os}-{arch}' where 'os' is in the
# format returned by platform.system() and 'arch' by platform.machine()
# - the newest non-cuda version should be set as 'preferred_ver'
# - a cuda dependency must be set for each new cuda version
_versions = {
"6.1.7-cuda": {
"Linux-x86_64": (
"c3dd8f8b7567061a155d1921586dd95540410b35b2ccb8a33a463d9db8642711",
"https://cdn.oxfordnanoportal.com/software/analysis/ont-guppy_6.1.7_linux64.tar.gz",
),
"Linux-aarch64": (
"e821fe85b538e1a5d38c17c8fc7497f6fad200ff9fdf0c98921b4d7b1d490914",
"https://cdn.oxfordnanoportal.com/software/analysis/ont-guppy_6.1.7_linuxaarch64_cuda10.tar.gz",
),
},
"6.1.7": {
"Linux-x86_64": (
"4540441ca5393d76f05485f38cdba2dc0b5785af31d77006bdc3664b3f2644cb",
"https://cdn.oxfordnanoportal.com/software/analysis/ont-guppy-cpu_6.1.7_linux64.tar.gz",
)
},
}
class OntGuppy(Package):
"""Guppy: local accelerated basecalling for Nanopore data"""
homepage = "https://community.nanoporetech.com/downloads/guppy/release_notes"
preferred_ver = "6.1.7"
preferred_defined = False
for ver, packages in _versions.items():
key = "{0}-{1}".format(platform.system(), platform.machine())
pkg = packages.get(key)
if pkg:
is_preferred = not preferred_defined and (ver == preferred_ver)
if is_preferred:
preferred_defined = True
version(ver, sha256=pkg[0], url=pkg[1], preferred=is_preferred)
depends_on("cuda@11.0.0:", when="@6.1.7-cuda", type="run")
def install(self, spec, prefix):
install_tree("bin", prefix.bin)
install_tree("data", prefix.data)
install_tree("lib", prefix.lib)
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