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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Pcma(MakefilePackage):
"""PCMA is a progressive multiple sequence alignment program that combines
two different alignment strategies."""
homepage = "http://prodata.swmed.edu/pcma/pcma.php"
url = "http://prodata.swmed.edu/download/pub/PCMA/pcma.tar.gz"
version("2.0", sha256="4b92d412126d393baa3ede501cafe9606ada9a66af6217d56befd6ec2e0c01ba")
def edit(self, spec, prefix):
makefile = FileFilter("makefile")
makefile.filter("gcc", spack_cc)
if spec.satisfies("%gcc@10:"):
# they missed one
filter_file(r"^sint \*seqlen_array;$", "extern sint *seqlen_array;", "calctree.c")
def install(self, spec, prefix):
mkdirp(prefix.bin)
install("pcma", prefix.bin)
# set return value and change return type of function [-Wreturn-type]
patch("fix_return_type_err.patch")
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