1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
|
# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class PyAmici(PythonPackage):
"""Advanced Multilanguage Interface for CVODES and IDAS"""
homepage = "https://github.com/AMICI-dev/AMICI"
pypi = "amici/amici-0.11.28.tar.gz"
version("0.16.0", sha256="1a2d6633ec34241d8d8b496d18d4318482cffe125e9ddf3ca6cac5d36d235f38")
version("0.11.28", sha256="a8ddda70d8ebdc40600b4ad2ea02eb26e765ca0e594b957f61866b8c84255d5b")
variant("boost", default=True, description="Enable boost support")
variant("hdf5", default=True, description="Enable HDF5 support")
depends_on("py-setuptools@48:", type=("build", "run"))
depends_on("blas", type=("build", "run"))
depends_on("boost", when="+boost", type=("build", "run"))
depends_on("hdf5", when="+hdf5", type=("build", "run"))
depends_on("swig@3.0:", type=("build", "run"))
depends_on("python@3.8:", type=("build", "run"))
depends_on("py-sympy@1.9:", type=("build", "run"))
depends_on("py-numpy@1.17.5:", when="^python@3.8", type=("build", "run"))
depends_on("py-numpy@1.19.3:", when="^python@3.9", type=("build", "run"))
depends_on("py-numpy@1.21.4:", when="^python@3.10:", type=("build", "run"))
depends_on("py-python-libsbml", type=("build", "run"))
depends_on("py-h5py", type=("build", "run"))
depends_on("py-pandas", type=("build", "run"))
depends_on("py-pkgconfig", type=("build", "run"))
depends_on("py-wurlitzer", type=("build", "run"))
depends_on("py-toposort", type=("build", "run"))
depends_on("py-mpmath", when="@0.16.0:", type=("build", "run"))
def setup_run_environment(self, env):
env.set("BLAS_LIBS", " ".join(self.spec["blas"].libs))
def setup_build_environment(self, env):
env.set("BLAS_LIBS", " ".join(self.spec["blas"].libs))
|