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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Satsuma2(CMakePackage):
"""Satsuma2 is an optimsed version of Satsuma, a tool to reliably align
large and complex DNA sequences providing maximum sensitivity (to find
all there is to find), specificity (to only find real homology) and
speed (to accomodate the billions of base pairs in vertebrate genomes).
"""
homepage = "https://github.com/bioinfologics/satsuma2"
git = "https://github.com/bioinfologics/satsuma2.git"
version("2021-03-04", commit="37c5f386819614cd3ce96016b423ddc4df1d86ec")
version("2016-11-22", commit="da694aeecf352e344b790bea4a7aaa529f5b69e6")
maintainers("snehring")
def patch(self):
filter_file(
"(^#include <unistd.h>$)", "\\1\n#include <memory>", "analysis/SatsumaSynteny2.cc"
)
def install(self, spec, prefix):
install_tree(join_path(self.build_directory, "bin"), prefix.bin)
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