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# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack.package import *
class Sparta(Package):
"""small RNA-PARE Target Analyzer (sPARTA) is a tool which utilizes
high-throughput sequencing to profile genome-wide cleavage
products."""
homepage = "https://github.com/atulkakrana/sPARTA.github"
url = "https://github.com/atulkakrana/sPARTA/archive/1.25.tar.gz"
version("1.25", sha256="007997b9bf5041ae35c9bb79455d533c0f0773f9dd3ba4e5ddf306139625681f")
depends_on("bowtie2")
depends_on("python@3:", type=("build", "run"))
depends_on("py-scipy", type=("build", "run"))
depends_on("py-numpy", type=("build", "run"))
def install(self, spec, prefix):
mkdirp(prefix.bin)
install("sPARTA.py", prefix.bin)
install("revFernoMap.py", prefix.bin)
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