The New Plan

ebuild branch has old ebuilds.  profiles dir still has CFLAGS.

Everything else is removed or modified for changing of upstream to
Alpine.

1 files changed, 0 insertions, 190 deletions

diff --git a/licenses/CYANA b/licenses/CYANA
deleted file mode 100644
index 6e7f5e30d..000000000
--- a/licenses/CYANA
+++ /dev/null
@@ -1,190 +0,0 @@
-CYANA 2.1 Academic Software License
-
-The CYANA 2.1 Academic Software License is a legal agreement, governed
-by the laws of Switzerland, between an end user (the ”Licensee”), either
-an individual or an entity, and Dr. Peter Güntert (the ”Licensor”). The
-program package CYANA 2.1 (copyright (c) 2002-2005 by Peter Güntert) for
-NMR structure calculation, comprising all computer programs, source
-code, license keys, documentation, example data and other files
-delivered to the Licensee, as well as any copies, modifications or
-derivative works made by the Licensee, are hereinafter referred to
-collectively as the ”Software”. A derivative work is any software that
-contains one or several parts of the Software in original or modified
-form. If the Licensor provides the Licensee with updates of the
-Software, these will become part of the Software and will be controlled
-by this license.
-
-1. The Licensor grants to the Licensee a non-exclusive,
-non-transferable, permanent license to install and use the Software on
-computer systems located at the site of the Licensee’s organization.
-However, a violation of any of the clauses of this license agreement by
-the Licensee shall terminate automatically and with immediate effect the
-Licensee’s right to install, use or store the Software in any form. Use
-of the Software is restricted to the Licensee and to direct
-collaborators who are members of the organization of the Licensee at the
-site of the Licensee and who accept the terms of this license. The
-Licensee shall neither use the Software to produce other software that
-duplicates functionality of the Software nor translate source code of
-the Software into another programming language.
-
-2. The Licensor retains at all times ownership of the Software delivered
-to the Licensee. Any modifications or derivative works based on the
-Software are considered part of the Software, and ownership thereof is
-retained by the Licensor. All parts of the Software must carry the
-copyright notice, will be controlled by this license, and will be
-promptly destroyed by the Licensee upon termination of this license.
-
-3. The Licensee shall not disclose in any form the Software or any
-modifications or derivative works based on the Software to third parties
-without prior written authorization from the Licensor. The Licensee
-shall not use the software for any purpose (research or otherwise) that
-is supported by a “for profit” organization without prior written
-authorization from the Licensor.
-
-4. The Licensee agrees that the Software has been developed in
-connection with academic research projects and is provided ”as is”. The
-Licensor disclaims all warranties with regard to the Software or any of
-its results, including any implied warranties of merchantability or
-fitness for a particular purpose. In no event shall the Licensor be
-liable for any damages, however caused, including, without limitation,
-any damages arising out of the use of the Software, loss of use of the
-Software, or damage of any sort to the Licensee.
-
-5. The Licensee agrees that any reports or publications of results
-obtained with the Software will acknowledge its use by the literature
-citation: Güntert, P., Mumenthaler, C. and Wüthrich, K. (1997). Torsion
-angle dynamics for NMR structure calculation with the new program DYANA.
-J. Mol. Biol. 273, 283-298. In addition, the Licensee agrees that any
-reports or publications of results obtained with the automated NOESY
-assignment module of the Software will acknowledge its use by the
-literature citation: Herrmann, T., Güntert, P. and Wüthrich, K. (2002).
-Protein NMR structure determination with automated NOE assignment using
-the new software CANDID and the torsion angle dynamics algorithm DYANA.
-J. Mol. Biol. 319, 209-227.
-
-6. The Licensee agrees to pay to L. A. Systems, Inc. (the “Distributor”)
-the license fee specified by the Distributor. The Distributor will
-deliver the Software upon receipt of a completed and duly signed
-original of this license agreement and of the license fee.
-
-
-Licensee:
-
-Name:        ....................
-
-Unit:        ....................
-
-Institution: ....................
-
-Address:     ....................
-
-City & Postal code: .............    Contact person (if different from
-                                     Licensee):
-
-Country:     ....................    Name:        ....................
-
-Email:       ....................    Email:       ....................
-
-Phone:       ....................    Phone:       ....................
-
-Fax:         ....................    Fax:         ....................
-
-
-Place and date:               Licensee’s signature:
-
-........................      ........................................
-
-
-
-CYANA 2.1 Commercial Software License
-
-The CYANA 2.1 Commercial Software License is a legal agreement, governed
-by the laws of Switzerland, between an end user (the ”Licensee”), either
-an individual or an entity, and Dr. Peter Güntert (the ”Licensor”). The
-program package CYANA 2.1 (copyright (c) 2002-2005 by Peter Güntert) for
-NMR structure calculation, comprising all computer programs, source
-code, license keys, documentation, example data and other files
-delivered to the Licensee, as well as any copies, modifications or
-derivative works made by the Licensee, are hereinafter referred to
-collectively as the ”Software”. A derivative work is any software that
-contains one or several parts of the Software in original or modified
-form. If the Licensor provides the Licensee with updates of the
-Software, these will become part of the Software and will be controlled
-by this license.
-
-1. The Licensor grants to the Licensee a non-exclusive,
-non-transferable, permanent license to install and use the Software on
-computer systems located at the site of the Licensee’s organization.
-However, a violation of any of the clauses of this license agreement by
-the Licensee shall terminate automatically and with immediate effect the
-Licensee’s right to install, use or store the Software in any form. Use
-of the Software is restricted to the Licensee and to direct
-collaborators who are members of the organization of the Licensee at the
-site of the Licensee and who accept the terms of this license. The
-Licensee shall neither use the Software to produce other software that
-duplicates functionality of the Software nor translate source code of
-the Software into another programming language.
-
-2. The Licensor retains at all times ownership of the Software delivered
-to the Licensee. Any modifications or derivative works based on the
-Software are considered part of the Software, and ownership thereof is
-retained by the Licensor. All parts of the Software must carry the
-copyright notice, will be controlled by this license, and will be
-promptly destroyed by the Licensee upon termination of this license.
-
-3. The Licensee shall not disclose in any form the Software or any
-modifications or derivative works based on the Software to third parties
-without prior written authorization from the Licensor.
-
-4. The Licensee agrees that the Software has been developed in
-connection with academic research projects and is provided ”as is”. The
-Licensor disclaims all warranties with regard to the Software or any of
-its results, including any implied warranties of merchantability or
-fitness for a particular purpose. In no event shall the Licensor be
-liable for any damages, however caused, including, without limitation,
-any damages arising out of the use of the Software, loss of use of the
-Software, or damage of any sort to the Licensee.
-
-5. The Licensee agrees that any reports or publications of results
-obtained with the Software will acknowledge its use by the literature
-citation: Güntert, P., Mumenthaler, C. and Wüthrich, K. (1997). Torsion
-angle dynamics for NMR structure calculation with the new program DYANA.
-J. Mol. Biol. 273, 283-298. In addition, the Licensee agrees that any
-reports or publications of results obtained with the automated NOESY
-assignment module of the Software will acknowledge its use by the
-literature citation: Herrmann, T., Güntert, P. and Wüthrich, K. (2002).
-Protein NMR structure determination with automated NOE assignment using
-the new software CANDID and the torsion angle dynamics algorithm DYANA.
-J. Mol. Biol. 319, 209-227.
-
-6. The Licensee agrees to pay to L. A. Systems, Inc. (the “Distributor”)
-the license fee specified by the Distributor. The Distributor will
-deliver the Software upon receipt of a completed and duly signed
-original of this license agreement and of the license fee.
-
-
-Licensee:
-
-Name:        ....................
-
-Unit:        ....................
-
-Institution: ....................
-
-Address:     ....................
-
-City & Postal code: .............    Contact person (if different from
-                                     Licensee):
-
-Country:     ....................    Name:        ....................
-
-Email:       ....................    Email:       ....................
-
-Phone:       ....................    Phone:       ....................
-
-Fax:         ....................    Fax:         ....................
-
-
-Place and date:               Licensee’s signature:
-
-........................      ........................................