The New Plan

ebuild branch has old ebuilds.  profiles dir still has CFLAGS.

Everything else is removed or modified for changing of upstream to
Alpine.

1 files changed, 0 insertions, 39 deletions

diff --git a/licenses/tm-align b/licenses/tm-align
deleted file mode 100644
index 9c86a443f..000000000
--- a/licenses/tm-align
+++ /dev/null
@@ -1,39 +0,0 @@
-TMalign.f:
-
-This program is to identify the best alignment of two protein
-structures that gives the highest TM-score. Input structures must
-be in the PDB format. By default, TM-score is normalized by the
-second protein. Users can obtain a brief instruction by simply
-running the program without arguments. For comments/suggestions,
-please contact email: zhng@umich.edu.
-
-Reference to cite:
-Yang Zhang, Jeffrey Skolnick, Nucl. Acid Res. 2005 33: 2303-9
-
-Permission to use, copy, modify, and distribute this program for
-any purpose, with or without fee, is hereby granted, provided that
-the notices on the head, the reference information, and this
-copyright notice appear in all copies or substantial portions of
-the Software. It is provided "as is" without express or implied
-warranty.
-
----
-
-TMscore.f:
-
-This program is to compare two protein structures and identify the
-best superposition that has the highest TM-score. Input structures
-must be in the PDB format. By default, TM-score is normalized by
-the second protein. Users can obtain a brief instruction by simply
-running the program without arguments. For comments/suggestions,
-please contact email: zhng@umich.edu.
-
-Reference:
-Yang Zhang, Jeffrey Skolnick, Proteins, 2004 57:702-10.
-
-Permission to use, copy, modify, and distribute this program for
-any purpose, with or without fee, is hereby granted, provided that
-the notices on the head, the reference information, and this
-copyright notice appear in all copies or substantial portions of
-the Software. It is provided "as is" without express or implied
-warranty.