The New Plan

ebuild branch has old ebuilds.  profiles dir still has CFLAGS.

Everything else is removed or modified for changing of upstream to
Alpine.

1 files changed, 0 insertions, 74 deletions

diff --git a/licenses/unafold b/licenses/unafold
deleted file mode 100644
index aad229d21..000000000
--- a/licenses/unafold
+++ /dev/null
@@ -1,74 +0,0 @@
-UNAFold 3.x ACADEMIC NON-COMMERCIAL USE LICENSE AGREEMENT
-
-1. UNAFold 3.x is the work of Drs. Nicholas R. Markham and Michael Zuker.  The
-   copyright in UNAFold 3.x is owned by RENSSELAER POLYTECHNIC INSTITUTE.
-
-2. This is a legal agreement between you, RECIPIENT, and RENSSELAER POLYTECHNIC
-   INSTITUTE.  By accepting, receiving, and using UNAFold 3.x, you agree to be
-   bound by all of its terms.  If you do not agree to all of the terms of this
-   Agreement, please DO NOT download the software; or, if you have already done
-   so, please delete all of the source code, documentation and compiled programs
-   associated with UNAFold 3.x.
-
-3. UNAFold 3.x is provided to RECIPIENT as source code.  RENSSELAER POLYTECHNIC
-   INSTITUTE grants to RECIPIENT a royalty free, non-exclusive, and non-
-   transferable license to compile, install, use UNAFold for internal research
-   only.  RECIPIENT acknowledges that UNAFold 3.x is a research tool that is
-   provided free of charge and only provided "as is." RENSSELAER POLYTECHNIC
-   INSTITUTE, its faculty, employees, or students, or former employees who have
-   developed UNAFold 3.x, have no obligation to assist RECIPIENT in its use,
-   correction, modification, or enhancement and are without any obligation to
-   provide any updates.  RECIPIENT may also offer UNAFold 3.x to the public over
-   a web server provided the program resides on a server at RECIPIENT's
-   institution and users are not able to download or modify the program.
-
-4. The title and copyright to UNAFold 3.x and any associated programs and
-   documentation shall remain with RENSSELAER POLYTECHNIC INSTITUTE.  RECIPIENT
-   agrees to preserve same.  RECIPIENT agrees not to make any copies of UNAFold
-   except for use in RECIPIENT's laboratory without RENSSELAER POLYTECHNIC
-   INSTITUTE's prior written permission.  Written permission can be obtained by
-   contacting Rensselaer Polytechnic Institute's Office of Technology
-   Commercialization by e-mail at burtok2@rpi.edu, or by telephone at 518-276-
-   3675.  RECIPIENT agrees to place the appropriate copyright notice on any such
-   copies.
-
-5. RECIPIENT may not modify UNAFold 3.x, except to fix minor errors, or create
-   derivative works without RENSSELAER POLYTECHNIC INSTITUTE's permission.
-   Please send all requests for modification to markhn@rpi.edu and
-   zukerm@rpi.edu.  Errors and bugs that are found should be reported to Nick
-   Markham and Michael Zuker, whether or not they are corrected.
-
-6. RECIPIENT shall not distribute UNAFold 3.x to other laboratories within
-   RECIPIENT's institution.  RECIPIENT shall not transfer UNAFold 3.x to another
-   location or person outside of RECIPIENT's institution without RENSSELAER
-   POLYTECHNIC INSTITUTE's prior written permission.  Please send all requests
-   for distribution to markhn@rpi.edu and zukerm@rpi.edu.
-
-7. If RENSSELAER POLYTECHNIC INSTITUTE grants RECIPIENT permission to distribute
-   UNAFold 3.x, under Paragraph 6, RECIPIENT shall only export UNAFold 3.x or
-   any part thereof, directly or indirectly, to any country where such export or
-   reexport is authorized in full compliance with the laws of the United States
-   of America.
-
-8. RECIPENT shall cite the following publications in any abstract, paper, or
-   presentation referencing UNAFold:
-
-a. N. Markham & M. Zuker. (2003) DINAMelt web server for nucleic acid melting
-   prediction.  Nucleic Acids Res. 33:W577-W581.
-
-9. RECIPIENT acknowledges that as UNAFold 3.x is a research tool and provided
-   free of charge, it is only provided "as is."  RENSSELAER POLYTECHNIC
-   INSTITUTE, its faculty, employees, or students, have no obligation to assist
-   RECIPIENT in its use, correction, modification, or enhancement and are
-   without any obligation to provide any updates.
-
-10. RENSSELAER POLYTECHNIC INSTITUTE MAKES NO REPRESENTATIONS AND EXTENDS NO
-    WARRANTIES OF ANY KIND, EITHER EXPRESS OR IMPLIED. THERE ARE NO EXPRESS OR
-    IMPLIED WARRANTIES OF MERCHANTABILITY OR FITNESS OF UNAFold 3.x FOR A
-    PARTICULAR PURPOSE, OR THAT THE USE OF UNAFold 3.x WILL NOT INFRINGE ANY
-    PATENT, COPYRIGHT, TRADEMARK, TRADE SECRET, OR OTHER INTELLECTUAL PROPERTY
-    RIGHTS OF ANOTHER PARTY, OR ANY OTHER EXPRESS OR IMPLIED WARRANTIES.
-    RENSSELAER POLYTECHNIC INSTITUTE WILL NOT BE LIABLE TO RECIPIENT FOR ANY
-    CLAIMS OR DAMAGES ARISING FROM YOUR RECIPIENT'S OF UNAFold 3.x, ANY CLAIM
-    FOR ANY LOSS OR INTERRUPTION OF BUSINESS, OR FOR ANY INDIRECT, SPECIAL, OR
-    CONSEQUENTIAL DAMAGES OF ANY KIND.