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diff --git a/licenses/procheck b/licenses/procheck deleted file mode 100644 index 793379cc3..000000000 --- a/licenses/procheck +++ /dev/null @@ -1,230 +0,0 @@ - - - PROCHECK - Stereochemical Quality of Protein Structures - ------------------------------------------------------- - and AQUA for PROCHECK-NMR - ------------------------- - - CONFIDENTIALITY AGREEMENT - ------------------------- - - - -In regard to the PROCHECK suite of programs, specified in Appendix 1 -herewith and the AQUA suite of programs specified in Appendix 2 herewith -(the Software) supplied to us, the copyright and other intellectual -property rights to which belong to the authors, we - - __________________________________________________________________ - -undertake to the authors that we shall be bound by the following terms and -conditions:- - -1. We will receive the Software and any related documentation in confidence -and will not use the same except for the purpose of the department's own -research. The Software will be used only by such of our officers or -employees to whom it must reasonably be communicated to enable us to -undertake our research and who agree to be bound by the same confidence. -The department shall procure and enforce such agreement from its staff for -the benefit of the authors. - -2. The publication of research using the Software must reference - - "Laskowski R A, MacArthur M W, Moss D S & Thornton J M (1993). PROCHECK: - a program to check the stereochemical quality of protein - structures. J. Appl. Cryst., 26, 283-291." - -and - - "Rullmann J A C (1996). AQUA, Computer Program, Department of NMR - Spectroscopy, Bijvoet Center for Biomolecular Research, Utrecht - University, The Netherlands." - - -3. Research shall take place solely at the department's premises at - - __________________________________________________________________ - -4. All forms of the Software will be kept in a reasonably secure place to -prevent unauthorised access. - -5. Each copy of the Software or, if not practicable then, any package -associated therewith shall be suitably marked (and such marking maintained) -with the following copyright notice: " Copyright 1992 M W MacArthur, R A -Laskowski, D S Moss, J A C Rullmann & J M Thornton All Rights Reserved". - -6. The Software may be modified but any changes made shall be made -available to the authors. - -7. The Software shall be used exclusively for academic teaching and -research. The Software will not be used for any commercial research or -research associated with an industrial company. - -8. The confidentiality obligation in paragraph one shall not apply: - - (i) to information and data known to the department at the time of - receipt hereunder (as evidenced by its written records); - - (ii) to information and data which was at the time of receipt in the - public domain or thereafter becomes so through no wrongful act of - the department; - - (iii) to information and data which the department receives from a third - party not in breach of any obligation of confidentiality owed to - the authors. - - - -Please sign this Undertaking and return a copy of it to indicate that you -have read, understood and accepted the above terms. - - - - For and on behalf of _____________________________ - - _________________________________________________ - - .................................................. - - Dated ............................................ - - - - -APPENDIX 1 - DETAILS OF THE PROCHECK SUITE OF PROGRAMS PROVIDED (v.3.4.3) ---------------------------------------------------------------- - -Files to be included --------------------- - - 1. anglen.f } - 2. anglen.inc } - 3. bplot.f } - 4. bplot.inc } - 5. brkcln.par } - 6. clean.f } - 7. gfac2pdb.f } - 8. gfac2pdb.inc } - 9. mplot.f } - 10. mplot.inc } Source program files - 11. nb.c } - 12. pplot.f } - 13. pplot.inc } - 14. ps.f } - 15. rmsdev.f } - 16. rmsdev.inc } - 17. secstr.f } - 18. sstruc.par } - 19. tplot.f } - 20. tplot.inc } - 21. viol2pdb.f } - 22. viol2pdb.inc } - 23. vplot.f } - 24. vplot.inc } - 25. gfac2pdb.scr } - 26. procheck.com } - 27. procheck.scr } - 28. procheck_comp.com } - 29. procheck_comp.scr } - 30. procheck_nmr.scr } - 31. proplot.com } - 32. proplot.scr } Script files - 33. proplot_comp.scr } - 34. proplot_nmr.scr } - 35. proplot_comp.com } - 36. prosub.com } - 37. setup.com } - 38. setup.scr } - 39. viol2pdb.scr } - 40. convax.for } - 41. procomp.com } Installation files - 42. procomp.scr } - 43. maninst.ps } - 44. manual.tar.Z } Documentation files - 45. nmr_manual.tar.Z } - 46. procheck.dat } - 47. procheck.prm } Data - 48. procheck_comp.prm } files - 49. procheck_nmr.prm } - - -APPENDIX 2 - DETAILS OF THE AQUA SUITE OF PROGRAMS PROVIDED (v.0.40) ------------------------------------------------------------ - -Files to be included --------------------- - -Source files:- ------------- - -AquaCalc.c AquaCalc.h - AquaData.h -AquaDist.c AquaDist.h -AquaFiles.c AquaFiles.h -AquaFuncts.c AquaFuncts.h -AquaFuncts_biosym.c AquaFuncts_biosym.h -AquaFuncts_cv.c AquaFuncts_cv.h -AquaFuncts_io.c AquaFuncts_io.h -AquaFuncts_pdb.c AquaFuncts_pdb.h -AquaFuncts_pdbmr.c AquaFuncts_pdbmr.h -AquaHow.c AquaHow.h - AquaMacros.h -AquaPseudo.c AquaPseudo.h -AquaStrucset.c AquaStrucset.h - AquaTypes.h -AquaWhat.c AquaWhat.h -Qext.c Qext.h -Range.c Range.h - cv_subs.h - -Script files:- ------------- -ReadNrv.pm* convDIANAtorsrestr qdbext* -aqdrst* convDISGEOdistrestr qguessc* -aqpc* convDISGEOtorsrestr qguessr* -aqpcsel convMRTABLE qhelp* -aquanal.pl* convXPLORdistrestr qmodr* -clean0* convXPLORtorsrestr qsplitr* -convBIOSYMdistrestr makecmm* qsumm* -convBIOSYMtorsrestr qconvert* qsumm_aux1* -convDIANAdistrestr qconvr* qsumm_aux2* - -Documentation:- -------------- -README models.txt qconvr.txt -aqpc.txt mr.txt qdbext.txt -aqua_setup.txt names.txt qext.txt -biosym.txt overview.txt qhelp.txt -chains.txt perl.txt qsumm.txt -conversion.txt procheck.txt restraint_format.txt -dbas.txt qanal.txt setup.txt -intro.txt qclean.txt torsion.txt -log.txt qconvert.txt xplor.txt - -Extras:- ------- -joinpdb* splitpdb* - - - -Please complete the above form, sign it, and then send or fax to:- - - -Roman Laskowski -European Bioinformatics Institute, -Wellcome Trust Genome Campus, -Hinxton, -Cambridge, CB10 1SD, -United Kingdom - -Fax:- +44 (0)1223 494 468 - -If you have any problems either installing the software or running it, -please e-mail your problems to:- - - roman@ebi.ac.uk - -Questions about AQUA should be directed to Ton Rullmann at - - rull@nmr.chem.ruu.nl - |