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# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Mrtrix3(Package):
"""MRtrix provides a set of tools to perform various advanced diffusion MRI
analyses, including constrained spherical deconvolution (CSD),
probabilistic tractography, track-density imaging, and apparent fibre
density."""
homepage = "http://www.mrtrix.org/"
git = "https://github.com/MRtrix3/mrtrix3.git"
version('2017-09-25', commit='72aca89e3d38c9d9e0c47104d0fb5bd2cbdb536d')
depends_on('python@2.7:', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
depends_on('mesa-glu')
depends_on('qt+opengl@4.7:')
depends_on('eigen')
depends_on('zlib')
depends_on('libtiff')
depends_on('fftw')
conflicts('%gcc@7:', when='@2017-09-25') # MRtrix3/mrtrix3#1041
def install(self, spec, prefix):
configure = Executable('./configure')
build = Executable('./build')
configure()
build()
install_tree('.', prefix)
def setup_environment(self, spac_env, run_env):
run_env.prepend_path('PATH', self.prefix)
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