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##############################################################################
# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Preseq(MakefilePackage):
"""The preseq package is aimed at predicting and estimating the complexity
of a genomic sequencing library, equivalent to predicting and
estimating the number of redundant reads from a given sequencing depth
and how many will be expected from additional sequencing using an
initial sequencing experiment."""
homepage = "https://github.com/smithlabcode/preseq"
url = "https://github.com/smithlabcode/preseq/releases/download/v2.0.2/preseq_v2.0.2.tar.bz2"
version('2.0.2', '9f2a7b597c9f08b821db6ee55e2ea39c')
depends_on('samtools')
depends_on('gsl')
def setup_environment(self, spack_env, run_env):
spack_env.set('PREFIX', self.prefix)
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