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--- spack-src/scripts/configure_ANTsPy.sh.orig 2021-11-19 13:27:28.551737371 +0100
+++ spack-src/scripts/configure_ANTsPy.sh 2021-11-19 13:28:07.422251249 +0100
@@ -1,26 +1,7 @@
#!/bin/bash
# ---------------------------------------------
-# clone pybind11 into library directory
-
-cd ants/lib # go to lib dir
-if [[ ! -d ~/pybind11 ]]; then
- git clone https://github.com/stnava/pybind11.git
-# git clone https://github.com/ncullen93/pybind11.git
-fi
-cd ../../ # go back to main dir
-
-# ---------------------------------------------
-# create local ~/.antspy dir and move package data to it
-
-if [[ ! -d ~/.antspy ]]; then
- mkdir ~/.antspy
-fi
-
-cp data/* ~/.antspy/
-
-# ---------------------------------------------
-# clone ANTs and move all files into library directory
+# move all files from ANTs into library directory
antsgit=https://github.com/ANTsX/ANTs.git
antstag=4528978446c73ed09927ea5ae1721b280d534dc0 # 2020 n4 type
@@ -30,20 +11,11 @@
# if antscore doesnt exist, create it
if [[ ! -d antscore ]] ; then
- git clone $antsbranch $antsgit antsrepo
-
if [[ ! -d antscore ]] ; then
mkdir antscore
fi
- cd antsrepo # go to antscore
- # check out right branch
- if [[ -d .git ]]; then
- git checkout master
- git pull
- git checkout $antstag
- fi
- cd ..
+ ln -sf ANTs antsrepo
# copy antscore files into library
cp -r antsrepo/Examples/* antscore/
cp -r antsrepo/Examples/include/* antscore
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