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authorBarry Britt <barry.britt@gmail.com>2017-05-06 12:05:12 -0500
committerAdam J. Stewart <ajstewart426@gmail.com>2017-05-06 12:05:12 -0500
commitc0a52cc59e65c48d095036a43c7e574aa088d0b3 (patch)
treec22c5f33220ce8a57ea16db2ac9f9f4824be5bcf /.gitignore
parent741e4df233482bedefc000387625663cf201c231 (diff)
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Updating bamtools to include a dependency for zlib. (#4031)
* Updating bamtools to include a dependency for zlib. In a standard compile, bamtools will fail if zlib headers are not installed on the target machine. In order to maintain compatibility with all systems -- and since zlib is included already as a dependency for cmake -- this patch adds zlib as a link dependency for the bamtools package. * Modified cmake rpath include. Bamtools has a non-standard library location, so we need to append $prefix/lib/bamtools to the rpath. Not sure there's a better way to do this... * Fixing syntax error in package.py Fixed a non-terminated parenthesis on line 46. * Updated bamtools to be a CMakePackage Removed extraneous code, and altered the package to extend cmake_args including the non-standard library location. * UpRemoving cmake dependency and removing blank line from end of file * Updates to cmake_args. Removed the duplicate definition of std_cmake_args in favor of simply overriding the CMAKE_INSTALL_RPATH variable that is provided. This should allow the package to be linked correctly to itself.
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