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authorKelly (KT) Thompson <kgt@lanl.gov>2016-03-28 19:53:22 -0600
committerKelly (KT) Thompson <kgt@lanl.gov>2016-03-28 19:53:22 -0600
commit40cea0110f4ad33fcc0045c67b5379b0b92fd2fc (patch)
treeb86f09c796e7d033ddcc8f588313a9c379871ba9
parent1f8d79b69ab005a6a372ff34806525148c0ed854 (diff)
parent02879d94ff7fdc02b870a22fe31614834934801f (diff)
downloadspack-40cea0110f4ad33fcc0045c67b5379b0b92fd2fc.tar.gz
spack-40cea0110f4ad33fcc0045c67b5379b0b92fd2fc.tar.bz2
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spack-40cea0110f4ad33fcc0045c67b5379b0b92fd2fc.zip
Merge remote-tracking branch 'upstream/develop' into pkg-graphviz
-rw-r--r--etc/spack/modules.yaml8
-rw-r--r--lib/spack/llnl/util/filesystem.py30
-rw-r--r--lib/spack/llnl/util/lang.py6
-rw-r--r--lib/spack/spack/cmd/info.py4
-rw-r--r--lib/spack/spack/concretize.py4
-rw-r--r--lib/spack/spack/config.py28
-rw-r--r--lib/spack/spack/modules.py19
-rw-r--r--lib/spack/spack/test/concretize.py9
-rw-r--r--var/spack/repos/builtin.mock/packages/python/package.py43
-rw-r--r--var/spack/repos/builtin/packages/arpack-ng/package.py5
-rw-r--r--var/spack/repos/builtin/packages/atlas/package.py58
-rw-r--r--var/spack/repos/builtin/packages/boost/package.py50
-rw-r--r--var/spack/repos/builtin/packages/cmake/package.py7
-rw-r--r--var/spack/repos/builtin/packages/cryptopp/package.py10
-rw-r--r--var/spack/repos/builtin/packages/espresso/package.py4
-rw-r--r--var/spack/repos/builtin/packages/gettext/package.py30
-rw-r--r--var/spack/repos/builtin/packages/hypre/package.py10
-rw-r--r--var/spack/repos/builtin/packages/libelf/package.py2
-rw-r--r--var/spack/repos/builtin/packages/metis/install_gklib_defs_rename.patch22
-rw-r--r--var/spack/repos/builtin/packages/metis/package.py17
-rw-r--r--var/spack/repos/builtin/packages/mumps/package.py3
-rw-r--r--var/spack/repos/builtin/packages/muparser/package.py18
-rw-r--r--var/spack/repos/builtin/packages/netcdf-cxx/package.py15
-rw-r--r--var/spack/repos/builtin/packages/netcdf/package.py7
-rw-r--r--var/spack/repos/builtin/packages/netlib-blas/package.py46
-rw-r--r--var/spack/repos/builtin/packages/netlib-lapack/package.py68
-rw-r--r--var/spack/repos/builtin/packages/netlib-scalapack/package.py5
-rw-r--r--var/spack/repos/builtin/packages/oce/package.py51
-rw-r--r--var/spack/repos/builtin/packages/openblas/package.py10
-rw-r--r--var/spack/repos/builtin/packages/p4est/package.py34
-rw-r--r--var/spack/repos/builtin/packages/parmetis/enable_external_metis.patch64
-rw-r--r--var/spack/repos/builtin/packages/parmetis/package.py8
-rw-r--r--var/spack/repos/builtin/packages/petsc/package.py50
-rw-r--r--var/spack/repos/builtin/packages/py-netcdf/package.py16
-rw-r--r--var/spack/repos/builtin/packages/py-numpy/package.py37
-rw-r--r--var/spack/repos/builtin/packages/py-scipy/package.py5
-rw-r--r--var/spack/repos/builtin/packages/python/package.py16
-rw-r--r--var/spack/repos/builtin/packages/ruby/package.py6
-rw-r--r--var/spack/repos/builtin/packages/silo/package.py23
-rw-r--r--var/spack/repos/builtin/packages/slepc/package.py49
-rw-r--r--var/spack/repos/builtin/packages/superlu-dist/package.py12
-rw-r--r--var/spack/repos/builtin/packages/tbb/package.py79
42 files changed, 771 insertions, 217 deletions
diff --git a/etc/spack/modules.yaml b/etc/spack/modules.yaml
new file mode 100644
index 0000000000..aa2a2c3fe2
--- /dev/null
+++ b/etc/spack/modules.yaml
@@ -0,0 +1,8 @@
+# -------------------------------------------------------------------------
+# This is the default spack module files generation configuration.
+#
+# Changes to this file will affect all users of this spack install,
+# although users can override these settings in their ~/.spack/modules.yaml.
+# -------------------------------------------------------------------------
+modules:
+ enable: ['tcl', 'dotkit']
diff --git a/lib/spack/llnl/util/filesystem.py b/lib/spack/llnl/util/filesystem.py
index c4665c284c..46ca03bec4 100644
--- a/lib/spack/llnl/util/filesystem.py
+++ b/lib/spack/llnl/util/filesystem.py
@@ -27,9 +27,10 @@ __all__ = ['set_install_permissions', 'install', 'install_tree', 'traverse_tree'
'force_remove', 'join_path', 'ancestor', 'can_access', 'filter_file',
'FileFilter', 'change_sed_delimiter', 'is_exe', 'force_symlink',
'set_executable', 'copy_mode', 'unset_executable_mode',
- 'remove_dead_links', 'remove_linked_tree']
+ 'remove_dead_links', 'remove_linked_tree', 'fix_darwin_install_name']
import os
+import glob
import sys
import re
import shutil
@@ -38,6 +39,7 @@ import errno
import getpass
from contextlib import contextmanager, closing
from tempfile import NamedTemporaryFile
+import subprocess
import llnl.util.tty as tty
from spack.util.compression import ALLOWED_ARCHIVE_TYPES
@@ -392,3 +394,29 @@ def remove_linked_tree(path):
os.unlink(path)
else:
shutil.rmtree(path, True)
+
+def fix_darwin_install_name(path):
+ """
+ Fix install name of dynamic libraries on Darwin to have full path.
+ There are two parts of this task:
+ (i) use install_name('-id',...) to change install name of a single lib;
+ (ii) use install_name('-change',...) to change the cross linking between libs.
+ The function assumes that all libraries are in one folder and currently won't
+ follow subfolders.
+
+ Args:
+ path: directory in which .dylib files are alocated
+
+ """
+ libs = glob.glob(join_path(path,"*.dylib"))
+ for lib in libs:
+ # fix install name first:
+ subprocess.Popen(["install_name_tool", "-id",lib,lib], stdout=subprocess.PIPE).communicate()[0]
+ long_deps = subprocess.Popen(["otool", "-L",lib], stdout=subprocess.PIPE).communicate()[0].split('\n')
+ deps = [dep.partition(' ')[0][1::] for dep in long_deps[2:-1]]
+ # fix all dependencies:
+ for dep in deps:
+ for loc in libs:
+ if dep == os.path.basename(loc):
+ subprocess.Popen(["install_name_tool", "-change",dep,loc,lib], stdout=subprocess.PIPE).communicate()[0]
+ break
diff --git a/lib/spack/llnl/util/lang.py b/lib/spack/llnl/util/lang.py
index 13d301f84e..3b4e2c8352 100644
--- a/lib/spack/llnl/util/lang.py
+++ b/lib/spack/llnl/util/lang.py
@@ -117,7 +117,8 @@ def caller_locals():
scope. Yes, this is some black magic, and yes it's useful
for implementing things like depends_on and provides.
"""
- stack = inspect.stack()
+ # Passing zero here skips line context for speed.
+ stack = inspect.stack(0)
try:
return stack[2][0].f_locals
finally:
@@ -128,7 +129,8 @@ def get_calling_module_name():
"""Make sure that the caller is a class definition, and return the
enclosing module's name.
"""
- stack = inspect.stack()
+ # Passing zero here skips line context for speed.
+ stack = inspect.stack(0)
try:
# Make sure locals contain __module__
caller_locals = stack[2][0].f_locals
diff --git a/lib/spack/spack/cmd/info.py b/lib/spack/spack/cmd/info.py
index e7abe7f4a5..c93db55c63 100644
--- a/lib/spack/spack/cmd/info.py
+++ b/lib/spack/spack/cmd/info.py
@@ -52,7 +52,7 @@ def print_text_info(pkg):
print "Safe versions: "
if not pkg.versions:
- print("None")
+ print(" None")
else:
pad = padder(pkg.versions, 4)
for v in reversed(sorted(pkg.versions)):
@@ -62,7 +62,7 @@ def print_text_info(pkg):
print
print "Variants:"
if not pkg.variants:
- print "None"
+ print " None"
else:
pad = padder(pkg.variants, 4)
diff --git a/lib/spack/spack/concretize.py b/lib/spack/spack/concretize.py
index 2e576743ec..ed9bf79868 100644
--- a/lib/spack/spack/concretize.py
+++ b/lib/spack/spack/concretize.py
@@ -159,6 +159,10 @@ class DefaultConcretizer(object):
if any(v.satisfies(sv) for sv in spec.versions)],
cmp=cmp_versions)
+ def prefer_key(v):
+ return pkg.versions.get(Version(v)).get('preferred', False)
+ valid_versions.sort(key=prefer_key, reverse=True)
+
if valid_versions:
spec.versions = ver([valid_versions[0]])
else:
diff --git a/lib/spack/spack/config.py b/lib/spack/spack/config.py
index 6afd69b3ac..14e5aaf4fb 100644
--- a/lib/spack/spack/config.py
+++ b/lib/spack/spack/config.py
@@ -237,7 +237,29 @@ section_schemas = {
'type' : 'object',
'default' : {},
}
- },},},},},}
+ },},},},},},
+ 'modules': {
+ '$schema': 'http://json-schema.org/schema#',
+ 'title': 'Spack module file configuration file schema',
+ 'type': 'object',
+ 'additionalProperties': False,
+ 'patternProperties': {
+ r'modules:?': {
+ 'type': 'object',
+ 'default': {},
+ 'additionalProperties': False,
+ 'properties': {
+ 'enable': {
+ 'type': 'array',
+ 'default': [],
+ 'items': {
+ 'type': 'string'
+ }
+ }
+ }
+ },
+ },
+ },
}
"""OrderedDict of config scopes keyed by name.
@@ -405,11 +427,11 @@ def _read_config_file(filename, schema):
validate_section(data, schema)
return data
- except MarkedYAMLError, e:
+ except MarkedYAMLError as e:
raise ConfigFileError(
"Error parsing yaml%s: %s" % (str(e.context_mark), e.problem))
- except IOError, e:
+ except IOError as e:
raise ConfigFileError(
"Error reading configuration file %s: %s" % (filename, str(e)))
diff --git a/lib/spack/spack/modules.py b/lib/spack/spack/modules.py
index 05c93cd3e6..f6a11c92e3 100644
--- a/lib/spack/spack/modules.py
+++ b/lib/spack/spack/modules.py
@@ -48,6 +48,7 @@ import textwrap
import llnl.util.tty as tty
import spack
+import spack.config
from llnl.util.filesystem import join_path, mkdirp
from spack.environment import *
@@ -56,6 +57,8 @@ __all__ = ['EnvModule', 'Dotkit', 'TclModule']
# Registry of all types of modules. Entries created by EnvModule's metaclass
module_types = {}
+CONFIGURATION = spack.config.get_config('modules')
+
def print_help():
"""For use by commands to tell user how to activate shell support."""
@@ -115,7 +118,7 @@ class EnvModule(object):
class __metaclass__(type):
def __init__(cls, name, bases, dict):
type.__init__(cls, name, bases, dict)
- if cls.name != 'env_module':
+ if cls.name != 'env_module' and cls.name in CONFIGURATION['enable']:
module_types[cls.name] = cls
def __init__(self, spec=None):
@@ -158,13 +161,13 @@ class EnvModule(object):
# Let the extendee modify their extensions before asking for
# package-specific modifications
- for extendee in self.pkg.extendees:
- extendee_spec = self.spec[extendee]
- extendee_spec.package.modify_module(
- self.pkg.module, extendee_spec, self.spec)
+ spack_env = EnvironmentModifications()
+ for item in self.pkg.extendees:
+ package = self.spec[item].package
+ package.setup_dependent_package(self.pkg.module, self.spec)
+ package.setup_dependent_environment(spack_env, env, self.spec)
# Package-specific environment modifications
- spack_env = EnvironmentModifications()
self.spec.package.setup_environment(spack_env, env)
# TODO : implement site-specific modifications and filters
@@ -275,6 +278,6 @@ class TclModule(EnvModule):
# Long description
if self.long_description:
module_file.write('proc ModulesHelp { } {\n')
- doc = re.sub(r'"', '\"', self.long_description)
- module_file.write("puts stderr \"%s\"\n" % doc)
+ for line in textwrap.wrap(self.long_description, 72):
+ module_file.write("puts stderr \"%s\"\n" % line)
module_file.write('}\n\n')
diff --git a/lib/spack/spack/test/concretize.py b/lib/spack/spack/test/concretize.py
index 08cce09674..9cd8c969ae 100644
--- a/lib/spack/spack/test/concretize.py
+++ b/lib/spack/spack/test/concretize.py
@@ -24,6 +24,7 @@
##############################################################################
import spack
from spack.spec import Spec, CompilerSpec
+from spack.version import ver
from spack.concretize import find_spec
from spack.test.mock_packages_test import *
@@ -77,6 +78,14 @@ class ConcretizeTest(MockPackagesTest):
self.check_concretize('mpich')
+ def test_concretize_preferred_version(self):
+ spec = self.check_concretize('python')
+ self.assertEqual(spec.versions, ver('2.7.11'))
+
+ spec = self.check_concretize('python@3.5.1')
+ self.assertEqual(spec.versions, ver('3.5.1'))
+
+
def test_concretize_with_virtual(self):
self.check_concretize('mpileaks ^mpi')
self.check_concretize('mpileaks ^mpi@:1.1')
diff --git a/var/spack/repos/builtin.mock/packages/python/package.py b/var/spack/repos/builtin.mock/packages/python/package.py
new file mode 100644
index 0000000000..c5fed52f53
--- /dev/null
+++ b/var/spack/repos/builtin.mock/packages/python/package.py
@@ -0,0 +1,43 @@
+##############################################################################
+# Copyright (c) 2013-2015, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU General Public License (as published by
+# the Free Software Foundation) version 2.1 dated February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public License
+# along with this program; if not, write to the Free Software Foundation,
+# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+class Python(Package):
+ """Dummy Python package to demonstrate preferred versions."""
+ homepage = "http://www.python.org"
+ url = "http://www.python.org/ftp/python/2.7.8/Python-2.7.8.tgz"
+
+ extendable = True
+
+ version('3.5.1', 'be78e48cdfc1a7ad90efff146dce6cfe')
+ version('3.5.0', 'a56c0c0b45d75a0ec9c6dee933c41c36')
+ version('2.7.11', '6b6076ec9e93f05dd63e47eb9c15728b', preferred=True)
+ version('2.7.10', 'd7547558fd673bd9d38e2108c6b42521')
+ version('2.7.9', '5eebcaa0030dc4061156d3429657fb83')
+ version('2.7.8', 'd4bca0159acb0b44a781292b5231936f')
+
+ def install(self, spec, prefix):
+ pass
+
diff --git a/var/spack/repos/builtin/packages/arpack-ng/package.py b/var/spack/repos/builtin/packages/arpack-ng/package.py
index 614071cf53..dd86b17a53 100644
--- a/var/spack/repos/builtin/packages/arpack-ng/package.py
+++ b/var/spack/repos/builtin/packages/arpack-ng/package.py
@@ -50,7 +50,10 @@ class ArpackNg(Package):
options = ['--prefix=%s' % prefix]
if '+mpi' in spec:
- options.append('--enable-mpi')
+ options.extend([
+ '--enable-mpi',
+ 'F77=mpif77' #FIXME: avoid hardcoding MPI wrapper names
+ ])
if '~shared' in spec:
options.append('--enable-shared=no')
diff --git a/var/spack/repos/builtin/packages/atlas/package.py b/var/spack/repos/builtin/packages/atlas/package.py
index fc683363a7..b5504122b7 100644
--- a/var/spack/repos/builtin/packages/atlas/package.py
+++ b/var/spack/repos/builtin/packages/atlas/package.py
@@ -1,31 +1,36 @@
from spack import *
from spack.util.executable import Executable
-import os
+import os.path
class Atlas(Package):
"""
- Automatically Tuned Linear Algebra Software, generic shared
- ATLAS is an approach for the automatic generation and optimization of
- numerical software. Currently ATLAS supplies optimized versions for the
- complete set of linear algebra kernels known as the Basic Linear Algebra
- Subroutines (BLAS), and a subset of the linear algebra routines in the
- LAPACK library.
+ Automatically Tuned Linear Algebra Software, generic shared ATLAS is an approach for the automatic generation and
+ optimization of numerical software. Currently ATLAS supplies optimized versions for the complete set of linear
+ algebra kernels known as the Basic Linear Algebra Subroutines (BLAS), and a subset of the linear algebra routines
+ in the LAPACK library.
"""
homepage = "http://math-atlas.sourceforge.net/"
+ version('3.10.2', 'a4e21f343dec8f22e7415e339f09f6da',
+ url='http://downloads.sourceforge.net/project/math-atlas/Stable/3.10.2/atlas3.10.2.tar.bz2', preferred=True)
+ resource(name='lapack',
+ url='http://www.netlib.org/lapack/lapack-3.5.0.tgz',
+ md5='b1d3e3e425b2e44a06760ff173104bdf',
+ destination='spack-resource-lapack',
+ when='@3:')
+
version('3.11.34', '0b6c5389c095c4c8785fd0f724ec6825',
url='http://sourceforge.net/projects/math-atlas/files/Developer%20%28unstable%29/3.11.34/atlas3.11.34.tar.bz2/download')
- version('3.10.2', 'a4e21f343dec8f22e7415e339f09f6da',
- url='http://downloads.sourceforge.net/project/math-atlas/Stable/3.10.2/atlas3.10.2.tar.bz2')
- # TODO: make this provide BLAS once it works better. Create a way
- # TODO: to mark "beta" packages and require explicit invocation.
+ variant('shared', default=True, description='Builds shared library')
- # provides('blas')
+ provides('blas')
+ provides('lapack')
+ parallel = False
def patch(self):
- # Disable thraed check. LLNL's environment does not allow
+ # Disable thread check. LLNL's environment does not allow
# disabling of CPU throttling in a way that ATLAS actually
# understands.
filter_file(r'^\s+if \(thrchk\) exit\(1\);', 'if (0) exit(1);',
@@ -33,26 +38,21 @@ class Atlas(Package):
# TODO: investigate a better way to add the check back in
# TODO: using, say, MSRs. Or move this to a variant.
- @when('@:3.10')
def install(self, spec, prefix):
- with working_dir('ATLAS-Build', create=True):
- configure = Executable('../configure')
- configure('--prefix=%s' % prefix, '-C', 'ic', 'cc', '-C', 'if', 'f77', "--dylibs")
- make()
- make('check')
- make('ptcheck')
- make('time')
- make("install")
+ options = []
+ if '+shared' in spec:
+ options.append('--shared')
- def install(self, spec, prefix):
- with working_dir('ATLAS-Build', create=True):
- configure = Executable('../configure')
- configure('--incdir=%s' % prefix.include,
- '--libdir=%s' % prefix.lib,
- '--cc=cc',
- "--shared")
+ # Lapack resource
+ lapack_stage = self.stage[1]
+ lapack_tarfile = os.path.basename(lapack_stage.fetcher.url)
+ lapack_tarfile_path = join_path(lapack_stage.path, lapack_tarfile)
+ options.append('--with-netlib-lapack-tarfile=%s' % lapack_tarfile_path)
+ with working_dir('spack-build', create=True):
+ configure = Executable('../configure')
+ configure('--prefix=%s' % prefix, *options)
make()
make('check')
make('ptcheck')
diff --git a/var/spack/repos/builtin/packages/boost/package.py b/var/spack/repos/builtin/packages/boost/package.py
index fb1f5daee7..82ce6fbb74 100644
--- a/var/spack/repos/builtin/packages/boost/package.py
+++ b/var/spack/repos/builtin/packages/boost/package.py
@@ -1,5 +1,6 @@
from spack import *
import spack
+import sys
class Boost(Package):
"""Boost provides free peer-reviewed portable C++ source
@@ -45,34 +46,34 @@ class Boost(Package):
version('1.34.1', '2d938467e8a448a2c9763e0a9f8ca7e5')
version('1.34.0', 'ed5b9291ffad776f8757a916e1726ad0')
- default_install_libs = set(['atomic',
- 'chrono',
- 'date_time',
- 'filesystem',
+ default_install_libs = set(['atomic',
+ 'chrono',
+ 'date_time',
+ 'filesystem',
'graph',
'iostreams',
'locale',
'log',
- 'math',
+ 'math',
'program_options',
- 'random',
- 'regex',
- 'serialization',
- 'signals',
- 'system',
- 'test',
- 'thread',
+ 'random',
+ 'regex',
+ 'serialization',
+ 'signals',
+ 'system',
+ 'test',
+ 'thread',
'wave'])
- # mpi/python are not installed by default because they pull in many
- # dependencies and/or because there is a great deal of customization
+ # mpi/python are not installed by default because they pull in many
+ # dependencies and/or because there is a great deal of customization
# possible (and it would be difficult to choose sensible defaults)
default_noinstall_libs = set(['mpi', 'python'])
all_libs = default_install_libs | default_noinstall_libs
for lib in all_libs:
- variant(lib, default=(lib not in default_noinstall_libs),
+ variant(lib, default=(lib not in default_noinstall_libs),
description="Compile with {0} library".format(lib))
variant('debug', default=False, description='Switch to the debug version of Boost')
@@ -124,9 +125,9 @@ class Boost(Package):
with open('user-config.jam', 'w') as f:
compiler_wrapper = join_path(spack.build_env_path, 'c++')
- f.write("using {0} : : {1} ;\n".format(boostToolsetId,
+ f.write("using {0} : : {1} ;\n".format(boostToolsetId,
compiler_wrapper))
-
+
if '+mpi' in spec:
f.write('using mpi : %s ;\n' %
join_path(spec['mpi'].prefix.bin, 'mpicxx'))
@@ -155,7 +156,7 @@ class Boost(Package):
linkTypes = ['static']
if '+shared' in spec:
linkTypes.append('shared')
-
+
threadingOpts = []
if '+multithreaded' in spec:
threadingOpts.append('multi')
@@ -163,12 +164,12 @@ class Boost(Package):
threadingOpts.append('single')
if not threadingOpts:
raise RuntimeError("At least one of {singlethreaded, multithreaded} must be enabled")
-
+
options.extend([
'toolset=%s' % self.determine_toolset(spec),
'link=%s' % ','.join(linkTypes),
'--layout=tagged'])
-
+
return threadingOpts
def install(self, spec, prefix):
@@ -177,14 +178,14 @@ class Boost(Package):
if "+{0}".format(lib) in spec:
withLibs.append(lib)
if not withLibs:
- # if no libraries are specified for compilation, then you dont have
+ # if no libraries are specified for compilation, then you dont have
# to configure/build anything, just copy over to the prefix directory.
src = join_path(self.stage.source_path, 'boost')
mkdirp(join_path(prefix, 'include'))
dst = join_path(prefix, 'include', 'boost')
install_tree(src, dst)
return
-
+
# to make Boost find the user-config.jam
env['BOOST_BUILD_PATH'] = './'
@@ -207,4 +208,7 @@ class Boost(Package):
# Boost.MPI if the threading options are not separated.
for threadingOpt in threadingOpts:
b2('install', 'threading=%s' % threadingOpt, *b2_options)
-
+
+ # The shared libraries are not installed correctly on Darwin; correct this
+ if (sys.platform == 'darwin') and ('+shared' in spec):
+ fix_darwin_install_name(prefix.lib)
diff --git a/var/spack/repos/builtin/packages/cmake/package.py b/var/spack/repos/builtin/packages/cmake/package.py
index cc93c7067c..1f93d39769 100644
--- a/var/spack/repos/builtin/packages/cmake/package.py
+++ b/var/spack/repos/builtin/packages/cmake/package.py
@@ -38,10 +38,12 @@ class Cmake(Package):
version('2.8.10.2', '097278785da7182ec0aea8769d06860c')
variant('ncurses', default=True, description='Enables the build of the ncurses gui')
+ variant('openssl', default=True, description="Enables CMake's OpenSSL features")
variant('qt', default=False, description='Enables the build of cmake-gui')
variant('doc', default=False, description='Enables the generation of html and man page documentation')
depends_on('ncurses', when='+ncurses')
+ depends_on('openssl', when='+openssl')
depends_on('qt', when='+qt')
depends_on('python@2.7.11:', when='+doc')
depends_on('py-sphinx', when='+doc')
@@ -77,8 +79,9 @@ class Cmake(Package):
options.append('--sphinx-html')
options.append('--sphinx-man')
- options.append('--')
- options.append('-DCMAKE_USE_OPENSSL=ON')
+ if '+openssl' in spec:
+ options.append('--')
+ options.append('-DCMAKE_USE_OPENSSL=ON')
configure(*options)
make()
diff --git a/var/spack/repos/builtin/packages/cryptopp/package.py b/var/spack/repos/builtin/packages/cryptopp/package.py
index 1693c4b160..bc83cb2b65 100644
--- a/var/spack/repos/builtin/packages/cryptopp/package.py
+++ b/var/spack/repos/builtin/packages/cryptopp/package.py
@@ -8,8 +8,8 @@ class Cryptopp(Package):
public-key encryption (RSA, DSA), and a few obsolete/historical encryption
algorithms (MD5, Panama)."""
- homepage = "http://www.cryptopp.com/"
- url = "http://www.cryptopp.com/cryptopp563.zip"
+ homepage = "http://www.cryptopp.com"
+ base_url = "http://www.cryptopp.com"
version('5.6.3', '3c5b70e2ec98b7a24988734446242d07')
version('5.6.2', '7ed022585698df48e65ce9218f6c6a67')
@@ -25,7 +25,5 @@ class Cryptopp(Package):
install('libcryptopp.a', prefix.lib)
def url_for_version(self, version):
- version_tuple = tuple(v for v in iter(version))
- version_string = reduce(lambda vs, nv: vs + str(nv), version_tuple, "")
-
- return "%scryptopp%s.zip" % (Cryptopp.homepage, version_string)
+ version_string = str(version).replace('.', '')
+ return '%s/cryptopp%s.zip' % (Cryptopp.base_url, version_string)
diff --git a/var/spack/repos/builtin/packages/espresso/package.py b/var/spack/repos/builtin/packages/espresso/package.py
index a2bf58f585..59f362ab46 100644
--- a/var/spack/repos/builtin/packages/espresso/package.py
+++ b/var/spack/repos/builtin/packages/espresso/package.py
@@ -32,6 +32,10 @@ class Espresso(Package):
if '+elpa' in spec and ('~mpi' in spec or '~scalapack' in spec):
raise RuntimeError(error.format(variant='elpa'))
+ def setup_environment(self, spack_env, run_env):
+ # Espresso copies every executable in prefix without creating sub-folders
+ run_env.prepend_path('PATH', self.prefix)
+
def install(self, spec, prefix):
self.check_variants(spec)
diff --git a/var/spack/repos/builtin/packages/gettext/package.py b/var/spack/repos/builtin/packages/gettext/package.py
new file mode 100644
index 0000000000..05712d7392
--- /dev/null
+++ b/var/spack/repos/builtin/packages/gettext/package.py
@@ -0,0 +1,30 @@
+from spack import *
+
+class Gettext(Package):
+ """GNU internationalization (i18n) and localization (l10n) library."""
+ homepage = "https://www.gnu.org/software/gettext/"
+ url = "http://ftpmirror.gnu.org/gettext/gettext-0.19.7.tar.xz"
+
+ version('0.19.7', 'f81e50556da41b44c1d59ac93474dca5')
+
+ def install(self, spec, prefix):
+ options = ['--disable-dependency-tracking',
+ '--disable-silent-rules',
+ '--disable-debug',
+ '--prefix=%s' % prefix,
+ '--with-included-gettext',
+ '--with-included-glib',
+ '--with-included-libcroco',
+ '--with-included-libunistring',
+ '--with-emacs',
+ '--with-lispdir=%s/emacs/site-lisp/gettext' % prefix.share,
+ '--disable-java',
+ '--disable-csharp',
+ '--without-git', # Don't use VCS systems to create these archives
+ '--without-cvs',
+ '--without-xz']
+
+ configure(*options)
+
+ make()
+ make("install")
diff --git a/var/spack/repos/builtin/packages/hypre/package.py b/var/spack/repos/builtin/packages/hypre/package.py
index 242ee100d7..0e99553293 100644
--- a/var/spack/repos/builtin/packages/hypre/package.py
+++ b/var/spack/repos/builtin/packages/hypre/package.py
@@ -1,5 +1,5 @@
from spack import *
-import os
+import os, sys
class Hypre(Package):
"""Hypre is a library of high performance preconditioners that
@@ -12,7 +12,10 @@ class Hypre(Package):
version('2.10.1', 'dc048c4cabb3cd549af72591474ad674')
version('2.10.0b', '768be38793a35bb5d055905b271f5b8e')
- variant('shared', default=True, description="Build shared library version (disables static library)")
+ # hypre does not know how to build shared libraries on Darwin
+ variant('shared', default=sys.platform!='darwin', description="Build shared library version (disables static library)")
+ # SuperluDist have conflicting headers with those in Hypre
+ variant('internal-superlu', default=True, description="Use internal Superlu routines")
depends_on("mpi")
depends_on("blas")
@@ -37,6 +40,9 @@ class Hypre(Package):
if '+shared' in self.spec:
configure_args.append("--enable-shared")
+ if '~internal-superlu' in self.spec:
+ configure_args.append("--without-superlu")
+
# Hypre's source is staged under ./src so we'll have to manually
# cd into it.
with working_dir("src"):
diff --git a/var/spack/repos/builtin/packages/libelf/package.py b/var/spack/repos/builtin/packages/libelf/package.py
index 9f16708af5..29bc21b65c 100644
--- a/var/spack/repos/builtin/packages/libelf/package.py
+++ b/var/spack/repos/builtin/packages/libelf/package.py
@@ -38,8 +38,6 @@ class Libelf(Package):
provides('elf')
- sanity_check_is_file = 'include/libelf.h'
-
def install(self, spec, prefix):
configure("--prefix=" + prefix,
"--enable-shared",
diff --git a/var/spack/repos/builtin/packages/metis/install_gklib_defs_rename.patch b/var/spack/repos/builtin/packages/metis/install_gklib_defs_rename.patch
new file mode 100644
index 0000000000..b182b167b9
--- /dev/null
+++ b/var/spack/repos/builtin/packages/metis/install_gklib_defs_rename.patch
@@ -0,0 +1,22 @@
+# HG changeset patch
+# User Sean Farley <sean@mcs.anl.gov>
+# Date 1332269671 18000
+# Tue Mar 20 13:54:31 2012 -0500
+# Node ID b95c0c2e1d8bf8e3273f7d45e856f0c0127d998e
+# Parent 88049269953c67c3fdcc4309bf901508a875f0dc
+cmake: add gklib headers to install into include
+
+diff -r 88049269953c -r b95c0c2e1d8b libmetis/CMakeLists.txt
+Index: libmetis/CMakeLists.txt
+===================================================================
+--- a/libmetis/CMakeLists.txt Tue Mar 20 13:54:29 2012 -0500
++++ b/libmetis/CMakeLists.txt Tue Mar 20 13:54:31 2012 -0500
+@@ -12,6 +12,8 @@ endif()
+ if(METIS_INSTALL)
+ install(TARGETS metis
+ LIBRARY DESTINATION lib
+ RUNTIME DESTINATION lib
+ ARCHIVE DESTINATION lib)
++ install(FILES gklib_defs.h DESTINATION include)
++ install(FILES gklib_rename.h DESTINATION include)
+ endif()
diff --git a/var/spack/repos/builtin/packages/metis/package.py b/var/spack/repos/builtin/packages/metis/package.py
index bbfc4de7d1..9301135f9f 100644
--- a/var/spack/repos/builtin/packages/metis/package.py
+++ b/var/spack/repos/builtin/packages/metis/package.py
@@ -24,7 +24,7 @@
##############################################################################
from spack import *
-
+import glob,sys
class Metis(Package):
"""
@@ -49,6 +49,8 @@ class Metis(Package):
depends_on('gdb', when='+gdb')
+ patch('install_gklib_defs_rename.patch')
+
def install(self, spec, prefix):
options = []
@@ -80,4 +82,15 @@ class Metis(Package):
with working_dir(build_directory, create=True):
cmake(source_directory, *options)
make()
- make("install") \ No newline at end of file
+ make("install")
+
+ # install GKlib headers, which will be needed for ParMETIS
+ GKlib_dist = join_path(prefix.include,'GKlib')
+ mkdirp(GKlib_dist)
+ fs = glob.glob(join_path(source_directory,'GKlib',"*.h"))
+ for f in fs:
+ install(f, GKlib_dist)
+
+ # The shared library is not installed correctly on Darwin; correct this
+ if (sys.platform == 'darwin') and ('+shared' in spec):
+ fix_darwin_install_name(prefix.lib)
diff --git a/var/spack/repos/builtin/packages/mumps/package.py b/var/spack/repos/builtin/packages/mumps/package.py
index 5c120c37df..5a254dfd00 100644
--- a/var/spack/repos/builtin/packages/mumps/package.py
+++ b/var/spack/repos/builtin/packages/mumps/package.py
@@ -135,7 +135,8 @@ class Mumps(Package):
self.write_makefile_inc()
- make(*make_libs)
+ # Build fails in parallel, at least on OS-X
+ make(*make_libs, parallel=False)
install_tree('lib', prefix.lib)
install_tree('include', prefix.include)
diff --git a/var/spack/repos/builtin/packages/muparser/package.py b/var/spack/repos/builtin/packages/muparser/package.py
new file mode 100644
index 0000000000..a1a9ff90e5
--- /dev/null
+++ b/var/spack/repos/builtin/packages/muparser/package.py
@@ -0,0 +1,18 @@
+from spack import *
+
+class Muparser(Package):
+ """C++ math expression parser library."""
+ homepage = "http://muparser.beltoforion.de/"
+ url = "https://github.com/beltoforion/muparser/archive/v2.2.5.tar.gz"
+
+ version('2.2.5', '02dae671aa5ad955fdcbcd3fee313fb7')
+
+ def install(self, spec, prefix):
+ options = ['--disable-debug',
+ '--disable-dependency-tracking',
+ '--prefix=%s' % prefix]
+
+ configure(*options)
+
+ make()
+ make("install")
diff --git a/var/spack/repos/builtin/packages/netcdf-cxx/package.py b/var/spack/repos/builtin/packages/netcdf-cxx/package.py
new file mode 100644
index 0000000000..5334dfb853
--- /dev/null
+++ b/var/spack/repos/builtin/packages/netcdf-cxx/package.py
@@ -0,0 +1,15 @@
+from spack import *
+
+class NetcdfCxx(Package):
+ """C++ compatibility bindings for NetCDF"""
+ homepage = "http://www.unidata.ucar.edu/software/netcdf"
+ url = "http://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-cxx-4.2.tar.gz"
+
+ version('4.2', 'd32b20c00f144ae6565d9e98d9f6204c')
+
+ depends_on('netcdf')
+
+ def install(self, spec, prefix):
+ configure('--prefix=%s' % prefix)
+ make()
+ make("install")
diff --git a/var/spack/repos/builtin/packages/netcdf/package.py b/var/spack/repos/builtin/packages/netcdf/package.py
index 227362399a..b60a2c4e9a 100644
--- a/var/spack/repos/builtin/packages/netcdf/package.py
+++ b/var/spack/repos/builtin/packages/netcdf/package.py
@@ -43,6 +43,13 @@ class Netcdf(Package):
"--enable-dap"
]
+ # Make sure Netcdf links against Spack's curl
+ # Otherwise it may pick up system's curl, which could lead to link errors:
+ # /usr/lib/x86_64-linux-gnu/libcurl.so: undefined reference to `SSL_CTX_use_certificate_chain_file@OPENSSL_1.0.0'
+ LIBS.append("-lcurl")
+ CPPFLAGS.append("-I%s" % spec['curl'].prefix.include)
+ LDFLAGS.append ("-L%s" % spec['curl'].prefix.lib)
+
if '+mpi' in spec:
config_args.append('--enable-parallel4')
diff --git a/var/spack/repos/builtin/packages/netlib-blas/package.py b/var/spack/repos/builtin/packages/netlib-blas/package.py
deleted file mode 100644
index 85e97323d3..0000000000
--- a/var/spack/repos/builtin/packages/netlib-blas/package.py
+++ /dev/null
@@ -1,46 +0,0 @@
-from spack import *
-import os
-
-
-class NetlibBlas(Package):
- """Netlib reference BLAS"""
- homepage = "http://www.netlib.org/lapack/"
- url = "http://www.netlib.org/lapack/lapack-3.5.0.tgz"
-
- version('3.5.0', 'b1d3e3e425b2e44a06760ff173104bdf')
-
- variant('fpic', default=False, description="Build with -fpic compiler option")
-
- # virtual dependency
- provides('blas')
-
- # Doesn't always build correctly in parallel
- parallel = False
-
- def patch(self):
- os.symlink('make.inc.example', 'make.inc')
-
- mf = FileFilter('make.inc')
- mf.filter('^FORTRAN.*', 'FORTRAN = f90')
- mf.filter('^LOADER.*', 'LOADER = f90')
- mf.filter('^CC =.*', 'CC = cc')
-
- if '+fpic' in self.spec:
- mf.filter('^OPTS.*=.*', 'OPTS = -O2 -frecursive -fpic')
- mf.filter('^CFLAGS =.*', 'CFLAGS = -O3 -fpic')
-
-
- def install(self, spec, prefix):
- make('blaslib')
-
- # Tests that blas builds correctly
- make('blas_testing')
-
- # No install provided
- mkdirp(prefix.lib)
- install('librefblas.a', prefix.lib)
-
- # Blas virtual package should provide blas.a and libblas.a
- with working_dir(prefix.lib):
- symlink('librefblas.a', 'blas.a')
- symlink('librefblas.a', 'libblas.a')
diff --git a/var/spack/repos/builtin/packages/netlib-lapack/package.py b/var/spack/repos/builtin/packages/netlib-lapack/package.py
index 78c5a053fe..c4b7ce3b04 100644
--- a/var/spack/repos/builtin/packages/netlib-lapack/package.py
+++ b/var/spack/repos/builtin/packages/netlib-lapack/package.py
@@ -1,16 +1,15 @@
from spack import *
+
class NetlibLapack(Package):
"""
- LAPACK version 3.X is a comprehensive FORTRAN library that does
- linear algebra operations including matrix inversions, least
- squared solutions to linear sets of equations, eigenvector
- analysis, singular value decomposition, etc. It is a very
- comprehensive and reputable package that has found extensive
- use in the scientific community.
+ LAPACK version 3.X is a comprehensive FORTRAN library that does linear algebra operations including matrix
+ inversions, least squared solutions to linear sets of equations, eigenvector analysis, singular value
+ decomposition, etc. It is a very comprehensive and reputable package that has found extensive use in the
+ scientific community.
"""
homepage = "http://www.netlib.org/lapack/"
- url = "http://www.netlib.org/lapack/lapack-3.5.0.tgz"
+ url = "http://www.netlib.org/lapack/lapack-3.5.0.tgz"
version('3.6.0', 'f2f6c67134e851fe189bb3ca1fbb5101')
version('3.5.0', 'b1d3e3e425b2e44a06760ff173104bdf')
@@ -19,41 +18,34 @@ class NetlibLapack(Package):
version('3.4.0', '02d5706ec03ba885fc246e5fa10d8c70')
version('3.3.1', 'd0d533ec9a5b74933c2a1e84eedc58b4')
- variant('shared', default=False, description="Build shared library version")
- variant('fpic', default=False, description="Build with -fpic compiler option")
+ variant('debug', default=False, description='Activates the Debug build type')
+ variant('shared', default=True, description="Build shared library version")
+ variant('external-blas', default=False, description='Build lapack with an external blas')
+
+ variant('lapacke', default=True, description='Activates the build of the LAPACKE C interface')
# virtual dependency
+ provides('blas', when='~external-blas')
provides('lapack')
- # blas is a virtual dependency.
- depends_on('blas')
depends_on('cmake')
-
- # Doesn't always build correctly in parallel
- parallel = False
-
- @when('^netlib-blas')
- def get_blas_libs(self):
- blas = self.spec['netlib-blas']
- return [join_path(blas.prefix.lib, 'blas.a')]
-
- @when('^atlas')
- def get_blas_libs(self):
- blas = self.spec['atlas']
- return [join_path(blas.prefix.lib, l)
- for l in ('libf77blas.a', 'libatlas.a')]
+ depends_on('blas', when='+external-blas')
def install(self, spec, prefix):
- blas_libs = ";".join(self.get_blas_libs())
- cmake_args = [".", '-DBLAS_LIBRARIES=' + blas_libs]
-
- if '+shared' in spec:
- cmake_args.append('-DBUILD_SHARED_LIBS=ON')
- if '+fpic' in spec:
- cmake_args.append('-DCMAKE_POSITION_INDEPENDENT_CODE=ON')
-
- cmake_args += std_cmake_args
-
- cmake(*cmake_args)
- make()
- make("install")
+ cmake_args = ['-DBUILD_SHARED_LIBS:BOOL=%s' % ('ON' if '+shared' in spec else 'OFF'),
+ '-DCMAKE_BUILD_TYPE:STRING=%s' % ('Debug' if '+debug' in spec else 'Release'),
+ '-DLAPACKE:BOOL=%s' % ('ON' if '+lapacke' in spec else 'OFF')]
+ if '+external-blas' in spec:
+ # TODO : the mechanism to specify the library should be more general,
+ # TODO : but this allows to have an hook to an external blas
+ cmake_args.extend([
+ '-DUSE_OPTIMIZED_BLAS:BOOL=ON',
+ '-DBLAS_LIBRARIES:PATH=%s' % join_path(spec['blas'].prefix.lib, 'libblas.a')
+ ])
+
+ cmake_args.extend(std_cmake_args)
+
+ with working_dir('spack-build', create=True):
+ cmake('..', *cmake_args)
+ make()
+ make("install")
diff --git a/var/spack/repos/builtin/packages/netlib-scalapack/package.py b/var/spack/repos/builtin/packages/netlib-scalapack/package.py
index c3e6822cdf..d59f8e41fe 100644
--- a/var/spack/repos/builtin/packages/netlib-scalapack/package.py
+++ b/var/spack/repos/builtin/packages/netlib-scalapack/package.py
@@ -41,6 +41,11 @@ class NetlibScalapack(Package):
make()
make("install")
+ # The shared libraries are not installed correctly on Darwin; correct this
+ if (sys.platform == 'darwin') and ('+shared' in spec):
+ fix_darwin_install_name(prefix.lib)
+
+
def setup_dependent_package(self, module, dependent_spec):
spec = self.spec
lib_dsuffix = '.dylib' if sys.platform == 'darwin' else '.so'
diff --git a/var/spack/repos/builtin/packages/oce/package.py b/var/spack/repos/builtin/packages/oce/package.py
new file mode 100644
index 0000000000..4d5081ac9d
--- /dev/null
+++ b/var/spack/repos/builtin/packages/oce/package.py
@@ -0,0 +1,51 @@
+from spack import *
+import platform, sys
+
+class Oce(Package):
+ """
+ Open CASCADE Community Edition:
+ patches/improvements/experiments contributed by users over the official Open CASCADE library.
+ """
+ homepage = "https://github.com/tpaviot/oce"
+ url = "https://github.com/tpaviot/oce/archive/OCE-0.17.tar.gz"
+
+ version('0.17.1', '36c67b87093c675698b483454258af91')
+ version('0.17' , 'f1a89395c4b0d199bea3db62b85f818d')
+ version('0.16.1', '4d591b240c9293e879f50d86a0cb2bb3')
+ version('0.16' , '7a4b4df5a104d75a537e25e7dd387eca')
+ version('0.15' , '7ec541a1c350ca8a684f74980e48801c')
+
+ depends_on('cmake@2.8:')
+
+ def install(self, spec, prefix):
+ options = []
+ options.extend(std_cmake_args)
+ options.extend([
+ '-DOCE_INSTALL_PREFIX=%s' % prefix,
+ '-DOCE_BUILD_SHARED_LIB:BOOL=ON',
+ '-DOCE_BUILD_TYPE:STRING=Release',
+ '-DOCE_DATAEXCHANGE:BOOL=ON',
+ '-DOCE_DISABLE_X11:BOOL=ON',
+ '-DOCE_DRAW:BOOL=OFF',
+ '-DOCE_MODEL:BOOL=ON',
+ '-DOCE_MULTITHREAD_LIBRARY:STRING=NONE', # FIXME: add tbb
+ '-DOCE_OCAF:BOOL=ON',
+ '-DOCE_USE_TCL_TEST_FRAMEWORK:BOOL=OFF',
+ '-DOCE_VISUALISATION:BOOL=OFF',
+ '-DOCE_WITH_FREEIMAGE:BOOL=OFF',
+ '-DOCE_WITH_GL2PS:BOOL=OFF',
+ '-DOCE_WITH_OPENCL:BOOL=OFF'
+ ])
+
+ if platform.system() == 'Darwin':
+ options.extend([
+ '-DOCE_OSX_USE_COCOA:BOOL=ON',
+ ])
+
+ cmake('.', *options)
+
+ make("install/strip")
+
+ # The shared libraries are not installed correctly on Darwin; correct this
+ if (sys.platform == 'darwin'):
+ fix_darwin_install_name(prefix.lib)
diff --git a/var/spack/repos/builtin/packages/openblas/package.py b/var/spack/repos/builtin/packages/openblas/package.py
index 781a1e2ec8..1d10f217c4 100644
--- a/var/spack/repos/builtin/packages/openblas/package.py
+++ b/var/spack/repos/builtin/packages/openblas/package.py
@@ -6,6 +6,7 @@ class Openblas(Package):
homepage = "http://www.openblas.net"
url = "http://github.com/xianyi/OpenBLAS/archive/v0.2.15.tar.gz"
+ version('0.2.17', '664a12807f2a2a7cda4781e3ab2ae0e1')
version('0.2.16', 'fef46ab92463bdbb1479dcec594ef6dc')
version('0.2.15', 'b1190f3d3471685f17cfd1ec1d252ac9')
@@ -14,7 +15,14 @@ class Openblas(Package):
provides('lapack')
def install(self, spec, prefix):
- make('libs', 'netlib', 'shared', 'CC=cc', 'FC=f77')
+ extra=[]
+ if spec.satisfies('@0.2.16'):
+ extra.extend([
+ 'BUILD_LAPACK_DEPRECATED=1' # fix missing _dggsvd_ and _sggsvd_
+ ])
+
+ make('libs', 'netlib', 'shared', 'CC=cc', 'FC=f77',*extra)
+ make("tests")
make('install', "PREFIX='%s'" % prefix)
lib_dsuffix = 'dylib' if sys.platform == 'darwin' else 'so'
diff --git a/var/spack/repos/builtin/packages/p4est/package.py b/var/spack/repos/builtin/packages/p4est/package.py
new file mode 100644
index 0000000000..1e2969fe64
--- /dev/null
+++ b/var/spack/repos/builtin/packages/p4est/package.py
@@ -0,0 +1,34 @@
+from spack import *
+
+class P4est(Package):
+ """Dynamic management of a collection (a forest) of adaptive octrees in parallel"""
+ homepage = "http://www.p4est.org"
+ url = "http://p4est.github.io/release/p4est-1.1.tar.gz"
+
+ version('1.1', '37ba7f4410958cfb38a2140339dbf64f')
+
+ # disable by default to make it work on frontend of clusters
+ variant('tests', default=False, description='Run small tests')
+
+ depends_on('mpi')
+
+ def install(self, spec, prefix):
+ options = ['--enable-mpi',
+ '--enable-shared',
+ '--disable-vtk-binary',
+ '--without-blas',
+ 'CPPFLAGS=-DSC_LOG_PRIORITY=SC_LP_ESSENTIAL',
+ 'CFLAGS=-O2',
+ 'CC=%s' % join_path(self.spec['mpi'].prefix.bin, 'mpicc'), # TODO: use ENV variables or MPI class wrappers
+ 'CXX=%s' % join_path(self.spec['mpi'].prefix.bin, 'mpic++'),
+ 'FC=%s' % join_path(self.spec['mpi'].prefix.bin, 'mpif90'),
+ 'F77=%s' % join_path(self.spec['mpi'].prefix.bin, 'mpif77'),
+ ]
+
+ configure('--prefix=%s' % prefix, *options)
+
+ make()
+ if '+tests' in self.spec:
+ make("check")
+
+ make("install")
diff --git a/var/spack/repos/builtin/packages/parmetis/enable_external_metis.patch b/var/spack/repos/builtin/packages/parmetis/enable_external_metis.patch
index 514781b8b8..e4f2729483 100644
--- a/var/spack/repos/builtin/packages/parmetis/enable_external_metis.patch
+++ b/var/spack/repos/builtin/packages/parmetis/enable_external_metis.patch
@@ -1,13 +1,71 @@
diff --git a/CMakeLists.txt b/CMakeLists.txt
-index ca945dd..1bf94e9 100644
+index ca945dd..aff8b5f 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
+@@ -23,7 +23,7 @@ else()
+ set(ParMETIS_LIBRARY_TYPE STATIC)
+ endif()
+
+-include(${GKLIB_PATH}/GKlibSystem.cmake)
++include_directories(${GKLIB_PATH})
+
+ # List of paths that the compiler will search for header files.
+ # i.e., the -I equivalent
@@ -33,7 +33,7 @@ include_directories(${GKLIB_PATH})
include_directories(${METIS_PATH}/include)
-
+
# List of directories that cmake will look for CMakeLists.txt
-add_subdirectory(${METIS_PATH}/libmetis ${CMAKE_BINARY_DIR}/libmetis)
-+#add_subdirectory(${METIS_PATH}/libmetis ${CMAKE_BINARY_DIR}/libmetis)
++find_library(METIS_LIBRARY metis PATHS ${METIS_PATH}/lib)
add_subdirectory(include)
add_subdirectory(libparmetis)
add_subdirectory(programs)
+diff --git a/libparmetis/CMakeLists.txt b/libparmetis/CMakeLists.txt
+index 9cfc8a7..e0c4de7 100644
+--- a/libparmetis/CMakeLists.txt
++++ b/libparmetis/CMakeLists.txt
+@@ -5,7 +5,10 @@ file(GLOB parmetis_sources *.c)
+ # Create libparmetis
+ add_library(parmetis ${ParMETIS_LIBRARY_TYPE} ${parmetis_sources})
+ # Link with metis and MPI libraries.
+-target_link_libraries(parmetis metis ${MPI_LIBRARIES})
++target_link_libraries(parmetis ${METIS_LIBRARY} ${MPI_LIBRARIES})
++if(UNIX)
++ target_link_libraries(parmetis m)
++endif()
+ set_target_properties(parmetis PROPERTIES LINK_FLAGS "${MPI_LINK_FLAGS}")
+
+ install(TARGETS parmetis
+diff --git a/libparmetis/parmetislib.h b/libparmetis/parmetislib.h
+index c1daeeb..07511f6 100644
+--- a/libparmetis/parmetislib.h
++++ b/libparmetis/parmetislib.h
+@@ -20,13 +20,12 @@
+
+ #include <parmetis.h>
+
+-#include "../metis/libmetis/gklib_defs.h"
++#include <gklib_defs.h>
+
+-#include <mpi.h>
++#include <mpi.h>
+
+ #include <rename.h>
+ #include <defs.h>
+ #include <struct.h>
+ #include <macros.h>
+ #include <proto.h>
+-
+diff --git a/programs/parmetisbin.h b/programs/parmetisbin.h
+index e26cd2d..d156480 100644
+--- a/programs/parmetisbin.h
++++ b/programs/parmetisbin.h
+@@ -19,7 +19,7 @@
+ #include <GKlib.h>
+ #include <parmetis.h>
+
+-#include "../metis/libmetis/gklib_defs.h"
++#include <gklib_defs.h>
+ #include "../libparmetis/rename.h"
+ #include "../libparmetis/defs.h"
+ #include "../libparmetis/struct.h"
diff --git a/var/spack/repos/builtin/packages/parmetis/package.py b/var/spack/repos/builtin/packages/parmetis/package.py
index c691cf4191..ff4370aa4b 100644
--- a/var/spack/repos/builtin/packages/parmetis/package.py
+++ b/var/spack/repos/builtin/packages/parmetis/package.py
@@ -24,7 +24,7 @@
##############################################################################
from spack import *
-
+import sys
class Parmetis(Package):
"""
@@ -64,7 +64,7 @@ class Parmetis(Package):
# FIXME : Once a contract is defined, MPI compilers should be retrieved indirectly via spec['mpi'] in case
# FIXME : they use a non-standard name
- options.extend(['-DGKLIB_PATH:PATH={metis_source}/GKlib'.format(metis_source=metis_source), # still need headers from METIS source, and they are not installed with METIS. shame...
+ options.extend(['-DGKLIB_PATH:PATH={metis_source}/GKlib'.format(metis_source=spec['metis'].prefix.include),
'-DMETIS_PATH:PATH={metis_source}'.format(metis_source=spec['metis'].prefix),
'-DCMAKE_C_COMPILER:STRING=mpicc',
'-DCMAKE_CXX_COMPILER:STRING=mpicxx'])
@@ -83,3 +83,7 @@ class Parmetis(Package):
cmake(source_directory, *options)
make()
make("install")
+
+ # The shared library is not installed correctly on Darwin; correct this
+ if (sys.platform == 'darwin') and ('+shared' in spec):
+ fix_darwin_install_name(prefix.lib)
diff --git a/var/spack/repos/builtin/packages/petsc/package.py b/var/spack/repos/builtin/packages/petsc/package.py
index 7239baaf7f..e9b7c8a732 100644
--- a/var/spack/repos/builtin/packages/petsc/package.py
+++ b/var/spack/repos/builtin/packages/petsc/package.py
@@ -17,14 +17,18 @@ class Petsc(Package):
version('3.5.1', 'a557e029711ebf425544e117ffa44d8f')
version('3.4.4', '7edbc68aa6d8d6a3295dd5f6c2f6979d')
- variant('shared', default=True, description='Enables the build of shared libraries')
- variant('mpi', default=True, description='Activates MPI support')
- variant('double', default=True, description='Switches between single and double precision')
+ variant('shared', default=True, description='Enables the build of shared libraries')
+ variant('mpi', default=True, description='Activates MPI support')
+ variant('double', default=True, description='Switches between single and double precision')
+ variant('complex', default=False, description='Build with complex numbers')
+ variant('debug', default=False, description='Compile in debug mode')
- variant('metis', default=True, description='Activates support for metis and parmetis')
- variant('hdf5', default=True, description='Activates support for HDF5 (only parallel)')
- variant('boost', default=True, description='Activates support for Boost')
- variant('hypre', default=True, description='Activates support for Hypre')
+ variant('metis', default=True, description='Activates support for metis and parmetis')
+ variant('hdf5', default=True, description='Activates support for HDF5 (only parallel)')
+ variant('boost', default=True, description='Activates support for Boost')
+ variant('hypre', default=True, description='Activates support for Hypre (only parallel)')
+ variant('mumps', default=True, description='Activates support for MUMPS (only parallel)')
+ variant('superlu-dist', default=True, description='Activates support for SuperluDist (only parallel)')
# Virtual dependencies
depends_on('blas')
@@ -40,7 +44,13 @@ class Petsc(Package):
depends_on('hdf5+mpi', when='+hdf5+mpi')
depends_on('parmetis', when='+metis+mpi')
- depends_on('hypre', when='+hypre+mpi')
+ # Hypre does not support complex numbers.
+ # Also PETSc prefer to build it without internal superlu, likely due to conflict in headers
+ # see https://bitbucket.org/petsc/petsc/src/90564b43f6b05485163c147b464b5d6d28cde3ef/config/BuildSystem/config/packages/hypre.py
+ depends_on('hypre~internal-superlu', when='+hypre+mpi~complex')
+ depends_on('superlu-dist', when='+superlu-dist+mpi')
+ depends_on('mumps+mpi', when='+mumps+mpi')
+ depends_on('scalapack', when='+mumps+mpi')
def mpi_dependent_options(self):
if '~mpi' in self.spec:
@@ -55,7 +65,7 @@ class Petsc(Package):
# If mpi is disabled (~mpi), it's an error to have any of these enabled.
# This generates a list of any such errors.
errors = [error_message_fmt.format(library=x)
- for x in ('hdf5', 'hypre', 'parmetis')
+ for x in ('hdf5', 'hypre', 'parmetis','mumps','superlu-dist')
if ('+'+x) in self.spec]
if errors:
errors = ['incompatible variants given'] + errors
@@ -77,16 +87,17 @@ class Petsc(Package):
return compiler_opts
def install(self, spec, prefix):
- options = ['--with-debugging=0',
- '--with-ssl=0']
+ options = ['--with-ssl=0']
options.extend(self.mpi_dependent_options())
options.extend([
'--with-precision=%s' % ('double' if '+double' in spec else 'single'),
+ '--with-scalar-type=%s' % ('complex' if '+complex' in spec else 'real'),
'--with-shared-libraries=%s' % ('1' if '+shared' in spec else '0'),
+ '--with-debugging=%s' % ('1' if '+debug' in spec else '0'),
'--with-blas-lapack-dir=%s' % spec['lapack'].prefix
])
# Activates library support if needed
- for library in ('metis', 'boost', 'hdf5', 'hypre', 'parmetis'):
+ for library in ('metis', 'boost', 'hdf5', 'hypre', 'parmetis','mumps','scalapack'):
options.append(
'--with-{library}={value}'.format(library=library, value=('1' if library in spec else '0'))
)
@@ -94,9 +105,24 @@ class Petsc(Package):
options.append(
'--with-{library}-dir={path}'.format(library=library, path=spec[library].prefix)
)
+ # PETSc does not pick up SuperluDist from the dir as they look for superlu_dist_4.1.a
+ if 'superlu-dist' in spec:
+ options.extend([
+ '--with-superlu_dist-include=%s' % spec['superlu-dist'].prefix.include,
+ '--with-superlu_dist-lib=%s' % join_path(spec['superlu-dist'].prefix.lib, 'libsuperlu_dist.a'),
+ '--with-superlu_dist=1'
+ ])
+ else:
+ options.append(
+ '--with-superlu_dist=0'
+ )
configure('--prefix=%s' % prefix, *options)
# PETSc has its own way of doing parallel make.
make('MAKE_NP=%s' % make_jobs, parallel=False)
make("install")
+
+ def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
+ # set up PETSC_DIR for everyone using PETSc package
+ spack_env.set('PETSC_DIR', self.prefix)
diff --git a/var/spack/repos/builtin/packages/py-netcdf/package.py b/var/spack/repos/builtin/packages/py-netcdf/package.py
new file mode 100644
index 0000000000..7faa15ad25
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-netcdf/package.py
@@ -0,0 +1,16 @@
+from spack import *
+
+class PyNetcdf(Package):
+ """Python interface to the netCDF Library."""
+ homepage = "http://unidata.github.io/netcdf4-python"
+ url = "https://github.com/Unidata/netcdf4-python/tarball/v1.2.3.1rel"
+
+ version('1.2.3.1', '4fc4320d4f2a77b894ebf8da1c9895af')
+
+ extends('python')
+ depends_on('py-numpy')
+ depends_on('py-cython')
+ depends_on('netcdf')
+
+ def install(self, spec, prefix):
+ python('setup.py', 'install', '--prefix=%s' % prefix)
diff --git a/var/spack/repos/builtin/packages/py-numpy/package.py b/var/spack/repos/builtin/packages/py-numpy/package.py
index 0354811186..a08e612df6 100644
--- a/var/spack/repos/builtin/packages/py-numpy/package.py
+++ b/var/spack/repos/builtin/packages/py-numpy/package.py
@@ -1,24 +1,43 @@
from spack import *
class PyNumpy(Package):
- """array processing for numbers, strings, records, and objects."""
- homepage = "https://pypi.python.org/pypi/numpy"
+ """NumPy is the fundamental package for scientific computing with Python.
+ It contains among other things: a powerful N-dimensional array object,
+ sophisticated (broadcasting) functions, tools for integrating C/C++ and
+ Fortran code, and useful linear algebra, Fourier transform, and random
+ number capabilities"""
+ homepage = "http://www.numpy.org/"
url = "https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz"
- version('1.9.1', '78842b73560ec378142665e712ae4ad9')
- version('1.9.2', 'a1ed53432dbcd256398898d35bc8e645')
+ version('1.10.4', 'aed294de0aa1ac7bd3f9745f4f1968ad')
+ version('1.9.2', 'a1ed53432dbcd256398898d35bc8e645')
+ version('1.9.1', '78842b73560ec378142665e712ae4ad9')
- variant('blas', default=True)
+
+ variant('blas', default=True)
+ variant('lapack', default=True)
extends('python')
depends_on('py-nose')
- depends_on('netlib-blas+fpic', when='+blas')
- depends_on('netlib-lapack+shared', when='+blas')
+ depends_on('blas', when='+blas')
+ depends_on('lapack', when='+lapack')
def install(self, spec, prefix):
+ libraries = []
+ library_dirs = []
+
if '+blas' in spec:
+ libraries.append('blas')
+ library_dirs.append(spec['blas'].prefix.lib)
+ if '+lapack' in spec:
+ libraries.append('lapack')
+ library_dirs.append(spec['lapack'].prefix.lib)
+
+ if '+blas' in spec or '+lapack' in spec:
with open('site.cfg', 'w') as f:
f.write('[DEFAULT]\n')
- f.write('libraries=lapack,blas\n')
- f.write('library_dirs=%s/lib:%s/lib\n' % (spec['blas'].prefix, spec['lapack'].prefix))
+ f.write('libraries=%s\n' % ','.join(libraries))
+ f.write('library_dirs=%s\n' % ':'.join(library_dirs))
+
python('setup.py', 'install', '--prefix=%s' % prefix)
+
diff --git a/var/spack/repos/builtin/packages/py-scipy/package.py b/var/spack/repos/builtin/packages/py-scipy/package.py
index 3a1124cc15..c2161c90c4 100644
--- a/var/spack/repos/builtin/packages/py-scipy/package.py
+++ b/var/spack/repos/builtin/packages/py-scipy/package.py
@@ -2,11 +2,12 @@ from spack import *
class PyScipy(Package):
"""Scientific Library for Python."""
- homepage = "https://pypi.python.org/pypi/scipy"
+ homepage = "http://www.scipy.org/"
url = "https://pypi.python.org/packages/source/s/scipy/scipy-0.15.0.tar.gz"
- version('0.15.0', '639112f077f0aeb6d80718dc5019dc7a')
+ version('0.17.0', '5ff2971e1ce90e762c59d2cd84837224')
version('0.15.1', 'be56cd8e60591d6332aac792a5880110')
+ version('0.15.0', '639112f077f0aeb6d80718dc5019dc7a')
extends('python')
depends_on('py-nose')
diff --git a/var/spack/repos/builtin/packages/python/package.py b/var/spack/repos/builtin/packages/python/package.py
index 4f55bc803e..f5237c3b57 100644
--- a/var/spack/repos/builtin/packages/python/package.py
+++ b/var/spack/repos/builtin/packages/python/package.py
@@ -105,10 +105,13 @@ class Python(Package):
pythonpath = ':'.join(python_paths)
spack_env.set('PYTHONPATH', pythonpath)
- run_env.set('PYTHONPATH', pythonpath)
+ # For run time environment set only the path for extension_spec and prepend it to PYTHONPATH
+ if extension_spec.package.extends(self.spec):
+ run_env.prepend_path('PYTHONPATH', os.path.join(extension_spec.prefix, self.site_packages_dir))
- def modify_module(self, module, spec, ext_spec):
+
+ def setup_dependent_package(self, module, ext_spec):
"""
Called before python modules' install() methods.
@@ -118,17 +121,18 @@ class Python(Package):
"""
# Python extension builds can have a global python executable function
if self.version >= Version("3.0.0") and self.version < Version("4.0.0"):
- module.python = Executable(join_path(spec.prefix.bin, 'python3'))
+ module.python = Executable(join_path(self.spec.prefix.bin, 'python3'))
else:
- module.python = Executable(join_path(spec.prefix.bin, 'python'))
+ module.python = Executable(join_path(self.spec.prefix.bin, 'python'))
# Add variables for lib/pythonX.Y and lib/pythonX.Y/site-packages dirs.
module.python_lib_dir = os.path.join(ext_spec.prefix, self.python_lib_dir)
module.python_include_dir = os.path.join(ext_spec.prefix, self.python_include_dir)
module.site_packages_dir = os.path.join(ext_spec.prefix, self.site_packages_dir)
- # Make the site packages directory if it does not exist already.
- mkdirp(module.site_packages_dir)
+ # Make the site packages directory for extensions, if it does not exist already.
+ if ext_spec.package.is_extension:
+ mkdirp(module.site_packages_dir)
# ========================================================================
# Handle specifics of activating and deactivating python modules.
diff --git a/var/spack/repos/builtin/packages/ruby/package.py b/var/spack/repos/builtin/packages/ruby/package.py
index 7ff1898ce9..e13677e4d2 100644
--- a/var/spack/repos/builtin/packages/ruby/package.py
+++ b/var/spack/repos/builtin/packages/ruby/package.py
@@ -30,7 +30,7 @@ class Ruby(Package):
# The actual installation path for this gem
spack_env.set('GEM_HOME', extension_spec.prefix)
- def modify_module(self, module, spec, ext_spec):
+ def setup_dependent_package(self, module, ext_spec):
"""Called before ruby modules' install() methods. Sets GEM_HOME
and GEM_PATH to values appropriate for the package being built.
@@ -39,5 +39,5 @@ class Ruby(Package):
gem('install', '<gem-name>.gem')
"""
# Ruby extension builds have global ruby and gem functions
- module.ruby = Executable(join_path(spec.prefix.bin, 'ruby'))
- module.gem = Executable(join_path(spec.prefix.bin, 'gem'))
+ module.ruby = Executable(join_path(self.spec.prefix.bin, 'ruby'))
+ module.gem = Executable(join_path(self.spec.prefix.bin, 'gem'))
diff --git a/var/spack/repos/builtin/packages/silo/package.py b/var/spack/repos/builtin/packages/silo/package.py
index d1aed78e0e..b7894e4d2b 100644
--- a/var/spack/repos/builtin/packages/silo/package.py
+++ b/var/spack/repos/builtin/packages/silo/package.py
@@ -5,24 +5,35 @@ class Silo(Package):
data to binary, disk files."""
homepage = "http://wci.llnl.gov/simulation/computer-codes/silo"
- url = "https://wci.llnl.gov/content/assets/docs/simulation/computer-codes/silo/silo-4.8/silo-4.8.tar.gz"
+ base_url = "https://wci.llnl.gov/content/assets/docs/simulation/computer-codes/silo"
+ version('4.10.2', '9ceac777a2f2469ac8cef40f4fab49c8')
+ version('4.9', 'a83eda4f06761a86726e918fc55e782a')
version('4.8', 'b1cbc0e7ec435eb656dc4b53a23663c9')
variant('fortran', default=True, description='Enable Fortran support')
+ variant('silex', default=False, description='Builds Silex, a GUI for viewing Silo files')
- depends_on("hdf5")
+ depends_on('hdf5')
+ depends_on('qt', when='+silex')
def install(self, spec, prefix):
config_args = [
'--enable-fortran' if '+fortran' in spec else '--disable-fortran',
+ '--enable-silex' if '+silex' in spec else '--disable-silex',
]
+ if '+silex' in spec:
+ config_args.append('--with-Qt-dir=%s' % spec['qt'].prefix)
+
configure(
- "--prefix=%s" % prefix,
- "--with-hdf5=%s,%s" % (spec['hdf5'].prefix.include, spec['hdf5'].prefix.lib),
- "--with-zlib=%s,%s" % (spec['zlib'].prefix.include, spec['zlib'].prefix.lib),
+ '--prefix=%s' % prefix,
+ '--with-hdf5=%s,%s' % (spec['hdf5'].prefix.include, spec['hdf5'].prefix.lib),
+ '--with-zlib=%s,%s' % (spec['zlib'].prefix.include, spec['zlib'].prefix.lib),
*config_args)
make()
- make("install")
+ make('install')
+
+ def url_for_version(self, version):
+ return '%s/silo-%s/silo-%s.tar.gz' % (Silo.base_url, version, version)
diff --git a/var/spack/repos/builtin/packages/slepc/package.py b/var/spack/repos/builtin/packages/slepc/package.py
new file mode 100644
index 0000000000..8b5f24394f
--- /dev/null
+++ b/var/spack/repos/builtin/packages/slepc/package.py
@@ -0,0 +1,49 @@
+import os
+from spack import *
+
+
+class Slepc(Package):
+ """
+ Scalable Library for Eigenvalue Computations.
+ """
+
+ homepage = "http://www.grycap.upv.es/slepc"
+ url = "http://slepc.upv.es/download/download.php?filename=slepc-3.6.2.tar.gz"
+
+ version('3.6.2', '2ab4311bed26ccf7771818665991b2ea3a9b15f97e29fd13911ab1293e8e65df')
+
+ variant('arpack', default=False, description='Enables Arpack wrappers')
+
+ depends_on('petsc')
+ depends_on('arpack-ng~mpi',when='+arpack^petsc~mpi')
+ depends_on('arpack-ng+mpi',when='+arpack^petsc+mpi')
+
+ def install(self, spec, prefix):
+ # set SLEPC_DIR for installation
+ os.environ['SLEPC_DIR'] = self.stage.source_path
+
+ options = []
+
+ if '+arpack' in spec:
+ options.extend([
+ '--with-arpack-dir=%s' % spec['arpack-ng'].prefix.lib,
+ ])
+ if 'arpack-ng~mpi' in spec:
+ options.extend([
+ '--with-arpack-flags=-larpack'
+ ])
+ else:
+ options.extend([
+ '--with-arpack-flags=-lparpack,-larpack'
+ ])
+
+ configure('--prefix=%s' % prefix, *options)
+
+ make('MAKE_NP=%s' % make_jobs, parallel=False)
+ #FIXME:
+ # make('test')
+ make('install')
+
+ def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
+ # set up SLEPC_DIR for everyone using SLEPc package
+ spack_env.set('SLEPC_DIR', self.prefix)
diff --git a/var/spack/repos/builtin/packages/superlu-dist/package.py b/var/spack/repos/builtin/packages/superlu-dist/package.py
index c4c76909b3..ddcb7f9225 100644
--- a/var/spack/repos/builtin/packages/superlu-dist/package.py
+++ b/var/spack/repos/builtin/packages/superlu-dist/package.py
@@ -1,4 +1,5 @@
from spack import *
+import glob
class SuperluDist(Package):
"""A general purpose library for the direct solution of large, sparse, nonsymmetric systems of linear equations on high performance machines."""
@@ -52,12 +53,13 @@ class SuperluDist(Package):
# system "make"
# need to install by hand
- headers_location = join_path(self.prefix.include,'superlu_dist')
+ headers_location = self.prefix.include
mkdirp(headers_location)
- # FIXME: fetch all headers in the folder automatically
- for header in ['Cnames.h','cublas_utils.h','dcomplex.h','html_mainpage.h','machines.h','old_colamd.h','psymbfact.h','superlu_ddefs.h','superlu_defs.h','superlu_enum_consts.h','superlu_zdefs.h','supermatrix.h','util_dist.h']:
- superludist_header = join_path(self.stage.source_path, 'SRC/',header)
- install(superludist_header, headers_location)
+ mkdirp(prefix.lib)
+
+ headers = glob.glob(join_path(self.stage.source_path, 'SRC','*.h'))
+ for h in headers:
+ install(h,headers_location)
superludist_lib = join_path(self.stage.source_path, 'lib/libsuperlu_dist.a')
install(superludist_lib,self.prefix.lib)
diff --git a/var/spack/repos/builtin/packages/tbb/package.py b/var/spack/repos/builtin/packages/tbb/package.py
new file mode 100644
index 0000000000..56ffe4c27c
--- /dev/null
+++ b/var/spack/repos/builtin/packages/tbb/package.py
@@ -0,0 +1,79 @@
+from spack import *
+import os
+import glob
+
+class Tbb(Package):
+ """Widely used C++ template library for task parallelism.
+ Intel Threading Building Blocks (Intel TBB) lets you easily write parallel
+ C++ programs that take full advantage of multicore performance, that are
+ portable and composable, and that have future-proof scalability.
+ """
+ homepage = "http://www.threadingbuildingblocks.org/"
+
+ # Only version-specific URL's work for TBB
+ version('4.4.3', '80707e277f69d9b20eeebdd7a5f5331137868ce1', url='https://www.threadingbuildingblocks.org/sites/default/files/software_releases/source/tbb44_20160128oss_src_0.tgz')
+
+ def coerce_to_spack(self,tbb_build_subdir):
+ for compiler in ["icc","gcc","clang"]:
+ fs = glob.glob(join_path(tbb_build_subdir,"*.%s.inc" % compiler ))
+ for f in fs:
+ lines = open(f).readlines()
+ of = open(f,"w")
+ for l in lines:
+ if l.strip().startswith("CPLUS ="):
+ of.write("# coerced to spack\n")
+ of.write("CPLUS = $(CXX)\n")
+ elif l.strip().startswith("CPLUS ="):
+ of.write("# coerced to spack\n")
+ of.write("CONLY = $(CC)\n")
+ else:
+ of.write(l);
+
+ def install(self, spec, prefix):
+ #
+ # we need to follow TBB's compiler selection logic to get the proper build + link flags
+ # but we still need to use spack's compiler wrappers
+ # to accomplish this, we do two things:
+ #
+ # * Look at the spack spec to determine which compiler we should pass to tbb's Makefile
+ #
+ # * patch tbb's build system to use the compiler wrappers (CC, CXX) for
+ # icc, gcc, clang
+ # (see coerce_to_spack())
+ #
+ self.coerce_to_spack("build")
+
+ if spec.satisfies('%clang'):
+ tbb_compiler = "clang"
+ elif spec.satisfies('%intel'):
+ tbb_compiler = "icc"
+ else:
+ tbb_compiler = "gcc"
+
+
+ mkdirp(prefix)
+ mkdirp(prefix.lib)
+
+ #
+ # tbb does not have a configure script or make install target
+ # we simply call make, and try to put the pieces together
+ #
+ make("compiler=%s" %(tbb_compiler))
+
+ # install headers to {prefix}/include
+ install_tree('include',prefix.include)
+
+ # install libs to {prefix}/lib
+ tbb_lib_names = ["libtbb",
+ "libtbbmalloc",
+ "libtbbmalloc_proxy"]
+
+ for lib_name in tbb_lib_names:
+ # install release libs
+ fs = glob.glob(join_path("build","*release",lib_name + ".*"))
+ for f in fs:
+ install(f, prefix.lib)
+ # install debug libs if they exist
+ fs = glob.glob(join_path("build","*debug",lib_name + "_debug.*"))
+ for f in fs:
+ install(f, prefix.lib)