PANDAseq: Create new package (#6694)

1 files changed, 48 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/pandaseq/package.py b/var/spack/repos/builtin/packages/pandaseq/package.py
new file mode 100644
index 0000000000..86a0fbb0c8
--- /dev/null
+++ b/var/spack/repos/builtin/packages/pandaseq/package.py
@@ -0,0 +1,48 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Pandaseq(AutotoolsPackage):
+    """PANDASEQ is a program to align Illumina reads, optionally with PCR
+    primers embedded in the sequence, and reconstruct an overlapping
+    sequence."""
+
+    homepage = "https://github.com/neufeld/pandaseq"
+    url      = "https://github.com/neufeld/pandaseq/archive/v2.11.tar.gz"
+
+    version('2.11', 'a8ae0e938bac592fc07dfa668147d80b')
+    version('2.10', '5b5b04c9b693a999f10a9c9bd643f068')
+
+    depends_on('autoconf',    type='build')
+    depends_on('automake',    type='build')
+    depends_on('libtool',     type='build')
+    depends_on('m4',          type='build')
+    depends_on('zlib',        type='build')
+    depends_on('pkg-config',  type='build')
+
+    def autoreconf(self, spec, prefix):
+        bash = which('bash')
+        bash('./autogen.sh')