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authorYifan Zhu <ifanzhu@foxmail.com>2017-09-28 20:11:28 -0500
committerbecker33 <becker33@llnl.gov>2017-09-28 18:11:28 -0700
commitaee44efada2a6c3c6e59d376e6ae230a778f71e6 (patch)
tree53ea3f0d8bb146e450931ed33e1d9320c746774c
parentb455fa2a7b58bbe89d8697a1f5cb4cce892ab4cf (diff)
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r-biostrings: created new package (#5498)
-rw-r--r--var/spack/repos/builtin/packages/r-biostrings/package.py41
1 files changed, 41 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-biostrings/package.py b/var/spack/repos/builtin/packages/r-biostrings/package.py
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+++ b/var/spack/repos/builtin/packages/r-biostrings/package.py
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+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RBiostrings(RPackage):
+ """Memory efficient string containers, string matching algorithms, and
+ other utilities, for fast manipulation of large biological sequences
+ or sets of sequences."""
+
+ homepage = "https://bioconductor.org/packages/Biostrings/"
+ url = "https://bioconductor.org/packages/3.5/bioc/src/contrib/Biostrings_2.44.2.tar.gz"
+
+ version('2.44.2', 'b30d8c116493ea160a0ca0a662666436')
+
+ depends_on('r-biocgenerics', type=('build', 'run'))
+ depends_on('r-s4vectors', type=('build', 'run'))
+ depends_on('r-iranges', type=('build', 'run'))
+ depends_on('r-xvector', type=('build', 'run'))