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authorAudrey Thoma <las_thoma15@iastate.edu>2017-06-21 10:51:05 -0500
committerAdam J. Stewart <ajstewart426@gmail.com>2017-06-21 10:51:05 -0500
commitb1fceb75d0f7b999c5f2a4edc686a1a947b60a95 (patch)
treebba1545a6829a6a4d2e894b18523ae99763b5bb1
parentcb87edf230c80fa1e0fc54027d0773f6a4d0b270 (diff)
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Andi and libdivsufsort (#4559)
* andi: adding andi and libdivsufsort * andi: adding andi and dependency libdivsufsort * andi: adding andi and dependency libdivsufsort * andi: fixing autotool dependency types * andi: fixed whitespace to make flake8 compliant
-rw-r--r--var/spack/repos/builtin/packages/andi/package.py42
-rw-r--r--var/spack/repos/builtin/packages/libdivsufsort/package.py35
2 files changed, 77 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/andi/package.py b/var/spack/repos/builtin/packages/andi/package.py
new file mode 100644
index 0000000000..0d48ad69af
--- /dev/null
+++ b/var/spack/repos/builtin/packages/andi/package.py
@@ -0,0 +1,42 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Andi(AutotoolsPackage):
+ """andi is used for for estimating the
+ evolutionary distance between closely related genomes."""
+
+ homepage = "https://github.com/EvolBioInf/andi"
+ url = "https://github.com/EvolBioInf/andi/archive/v0.10.tar.gz"
+
+ version('0.10', '3aaba7961798bb4aaa546baa44e469d8')
+
+ depends_on('m4', type='build')
+ depends_on('autoconf', type='build')
+ depends_on('automake', type='build')
+ depends_on('libtool', type='build')
+ depends_on('gsl')
+ depends_on('libdivsufsort')
diff --git a/var/spack/repos/builtin/packages/libdivsufsort/package.py b/var/spack/repos/builtin/packages/libdivsufsort/package.py
new file mode 100644
index 0000000000..88355f8725
--- /dev/null
+++ b/var/spack/repos/builtin/packages/libdivsufsort/package.py
@@ -0,0 +1,35 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Libdivsufsort(CMakePackage):
+ """libdivsufsort is a software library that implements a
+ lightweight suffix array construction algorithm."""
+
+ homepage = "https://github.com/y-256/libdivsufsort"
+ url = "https://github.com/y-256/libdivsufsort/archive/2.0.1.tar.gz"
+
+ version('2.0.1', 'a75c6be4715d3d659936f3a1ab8cb5c0')