summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorGlenn Johnson <glenn-johnson@uiowa.edu>2021-04-20 04:31:05 -0500
committerGitHub <noreply@github.com>2021-04-20 11:31:05 +0200
commitba9eb19e5d70b71142259cb9feb39f7827dec830 (patch)
treef5f8618ed9740954ce62059c31e8dbf2f5c342bd
parent7ed05b2e5e87476595538ac19078b9a068538937 (diff)
downloadspack-ba9eb19e5d70b71142259cb9feb39f7827dec830.tar.gz
spack-ba9eb19e5d70b71142259cb9feb39f7827dec830.tar.bz2
spack-ba9eb19e5d70b71142259cb9feb39f7827dec830.tar.xz
spack-ba9eb19e5d70b71142259cb9feb39f7827dec830.zip
r-illuminahumanmethylationepicanno-ilm10b4-hg19: new package (#23101)
-rw-r--r--var/spack/repos/builtin/packages/r-illuminahumanmethylationepicanno-ilm10b4-hg19/package.py19
1 files changed, 19 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-illuminahumanmethylationepicanno-ilm10b4-hg19/package.py b/var/spack/repos/builtin/packages/r-illuminahumanmethylationepicanno-ilm10b4-hg19/package.py
new file mode 100644
index 0000000000..a04f1c5507
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-illuminahumanmethylationepicanno-ilm10b4-hg19/package.py
@@ -0,0 +1,19 @@
+# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class RIlluminahumanmethylationepicannoIlm10b4Hg19(RPackage):
+ """Annotation for Illumina's EPIC methylation arrays"""
+
+ homepage = "https://bitbucket.com/kasperdanielhansen/Illumina_EPIC"
+ url = "https://bioconductor.org/packages/release/data/annotation/src/contrib/IlluminaHumanMethylationEPICanno.ilm10b4.hg19_0.6.0.tar.gz"
+ bioc = "IlluminaHumanMethylationEPICanno.ilm10b4.hg19"
+
+ version('0.6.0', sha256='2c8128126b63e7fa805a5f3b02449367dca9c3be3eb5f6300acc718826590719')
+
+ depends_on('r@3.3.0:', type=('build', 'run'))
+ depends_on('r-minfi@1.19.15:', type=('build', 'run'))