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| author | George Hartzell <hartzell@alerce.com> | 2017-08-09 20:17:34 -0700 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2017-08-09 22:17:34 -0500 |
| commit | c6cd447a8a7fb6b0a143f2ef9503a4edfd770d44 (patch) | |
| tree | 6b25aa4aa1f3d7939b118f4885a5565ada71e7db | |
| parent | 5bb86ce9643fdf86c76a1d03499113372ce72e3b (diff) | |
| download | spack-c6cd447a8a7fb6b0a143f2ef9503a4edfd770d44.tar.gz spack-c6cd447a8a7fb6b0a143f2ef9503a4edfd770d44.tar.bz2 spack-c6cd447a8a7fb6b0a143f2ef9503a4edfd770d44.tar.xz spack-c6cd447a8a7fb6b0a143f2ef9503a4edfd770d44.zip | |
Add version 2.19.1.403 to bcl2fastq2 package (#5047)
* Update bcl2fastq2 with info for 2.19.1.403
Heads up, the download location changed (domain name AND protocol).
* Flake8 fix
What's one space between friends?
| -rw-r--r-- | var/spack/repos/builtin/packages/bcl2fastq2/package.py | 13 |
1 files changed, 10 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/bcl2fastq2/package.py b/var/spack/repos/builtin/packages/bcl2fastq2/package.py index 7af1815757..64060c2b9b 100644 --- a/var/spack/repos/builtin/packages/bcl2fastq2/package.py +++ b/var/spack/repos/builtin/packages/bcl2fastq2/package.py @@ -37,8 +37,8 @@ class Bcl2fastq2(Package): files.""" homepage = "https://support.illumina.com/downloads/bcl2fastq-conversion-software-v2-18.html" - url = "https://support.illumina.com/content/dam/illumina-support/documents/downloads/software/bcl2fastq/bcl2fastq2-v2-18-0-12-tar.zip" + version('2.19.1.403', 'baba7a02767fd868e87cb36781d2be26') version('2.18.0.12', 'fbe06492117f65609c41be0c27e3215c') # 2.17.1.14 is no longer distributed. If you have a copy of the # source tarball, you can drop it into a local mirror w/ the name @@ -61,9 +61,16 @@ class Bcl2fastq2(Package): root_cmakelists_dir = 'src' + # v2.17.1.14 and v2.18.0.12 were available via HTTP. + # v2.19.1.403 is only available via ftp. + # who knows what the future will hold. def url_for_version(self, version): - url = "https://support.illumina.com/content/dam/illumina-support/documents/downloads/software/bcl2fastq/bcl2fastq2-v{0}-tar.zip" - return url.format(version.dashed) + if version.string == '2.19.1.403': + return "ftp://webdata2:webdata2@ussd-ftp.illumina.com/downloads/software/bcl2fastq/bcl2fastq2-v2.19.1-tar.zip" + else: + url = "https://support.illumina.com/content/dam/illumina-support/documents/downloads/software/bcl2fastq/bcl2fastq2-v{0}-tar.zip" + # - required to change the version from dots to dashes. + return url.format(version.dashed) # Illumina tucks the source inside a gzipped tarball inside a zip # file. We let the normal Spack expansion bit unzip the zip file, |