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| author | lingnanyuan <1297162327@qq.com> | 2017-10-09 18:05:53 -0500 |
|---|---|---|
| committer | Christoph Junghans <christoph.junghans@gmail.com> | 2017-10-09 17:05:53 -0600 |
| commit | 196b82f2c77af765eb2328cc00b16d0532629fa0 (patch) | |
| tree | 97d944fdfbf9e0ce236e50eeeab0d38cd6b14247 | |
| parent | ef1f71447e335dfe4bf592178fe26e2fb905dcc1 (diff) | |
| download | spack-196b82f2c77af765eb2328cc00b16d0532629fa0.tar.gz spack-196b82f2c77af765eb2328cc00b16d0532629fa0.tar.bz2 spack-196b82f2c77af765eb2328cc00b16d0532629fa0.tar.xz spack-196b82f2c77af765eb2328cc00b16d0532629fa0.zip | |
r-affycompatible: Create new package. (#5664)
| -rw-r--r-- | var/spack/repos/builtin/packages/r-affycompatible/package.py | 44 |
1 files changed, 44 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-affycompatible/package.py b/var/spack/repos/builtin/packages/r-affycompatible/package.py new file mode 100644 index 0000000000..3f78340e0b --- /dev/null +++ b/var/spack/repos/builtin/packages/r-affycompatible/package.py @@ -0,0 +1,44 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RAffycompatible(RPackage): + """This package provides an interface to Affymetrix chip annotation + and sample attribute files. The package allows an easy way for users + to download and manage local data bases of Affynmetrix NetAffx + annotation files. The package also provides access to GeneChip + Operating System (GCOS) and GeneChip Command Console + (AGCC)-compatible sample annotation files.""" + + homepage = "https://www.bioconductor.org/packages/AffyCompatible/" + url = "https://www.bioconductor.org/packages/release/bioc/src/contrib/AffyCompatible_1.36.0.tar.gz" + + version('1.36.0', '0e30d7f20308d7c48beb4a03b5ea20c6') + + depends_on('r@3.4.0:3.4.9', when=('@1.36.0')) + depends_on('r-xml', type=('build', 'run')) + depends_on('r-rcurl', type=('build', 'run')) + depends_on('r-biostrings', type=('build', 'run')) |