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authorGeorge Hartzell <hartzell@alerce.com>2017-05-23 13:37:24 -0700
committerAdam J. Stewart <ajstewart426@gmail.com>2017-05-23 15:37:24 -0500
commit39ac8abbbd1bae825e24b0f399f7a1371509b04c (patch)
tree07f4e7d282a2dab0253ac3580c17a219a5b0cb71
parentd38e601134fd251b3ef7229ed8f384526f1b165f (diff)
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Add support for addl versions of bcl2fastq2 (#4328)
Two changes: - It seems that Illumina version numbers are dotted and that the dashed version in the 2.18... filename is an anomaly (based on the names for 2.17.1.14 and 2.19.0). `url_for_version` does the right thing for 2.18. It will need to be fixed when support for 2.19 is added. 2.17 is no longer generally available so it gets a pass. - Add version and hash for 2.17.1.14. 2.17.1.14 is no longer distributed. If you have a copy of the source tarball, you can drop it into a local mirror w/ the name mirror/bcl2fastq2/bcl2fastq2-2.17.1.14.zip and go from there.
-rw-r--r--var/spack/repos/builtin/packages/bcl2fastq2/package.py6
1 files changed, 5 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/bcl2fastq2/package.py b/var/spack/repos/builtin/packages/bcl2fastq2/package.py
index 98799a1444..2aff74b8a8 100644
--- a/var/spack/repos/builtin/packages/bcl2fastq2/package.py
+++ b/var/spack/repos/builtin/packages/bcl2fastq2/package.py
@@ -39,7 +39,11 @@ class Bcl2fastq2(Package):
homepage = "https://support.illumina.com/downloads/bcl2fastq-conversion-software-v2-18.html"
url = "https://support.illumina.com/content/dam/illumina-support/documents/downloads/software/bcl2fastq/bcl2fastq2-v2-18-0-12-tar.zip"
- version('2-18-0-12', 'fbe06492117f65609c41be0c27e3215c')
+ version('2.18.0.12', 'fbe06492117f65609c41be0c27e3215c')
+ # 2.17.1.14 is no longer distributed. If you have a copy of the
+ # source tarball, you can drop it into a local mirror w/ the name
+ # mirror/bcl2fastq2/bcl2fastq2-2.17.1.14.zip and go from there.
+ version('2.17.1.14', '7426226c6db095862e636b95c38608d3')
depends_on('boost@1.54.0')
depends_on('cmake@2.8.9:')