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| author | Glenn Johnson <glenn-johnson@uiowa.edu> | 2022-01-07 12:17:36 -0600 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-01-07 11:17:36 -0700 |
| commit | 5091dc212441067532eb664612c13a00d14e9fd0 (patch) | |
| tree | 20534810706b7dd42b025b5df8092b3e2bc639fa | |
| parent | 7bed76786da26959b871ed7de88f1f6bc1e3c525 (diff) | |
| download | spack-5091dc212441067532eb664612c13a00d14e9fd0.tar.gz spack-5091dc212441067532eb664612c13a00d14e9fd0.tar.bz2 spack-5091dc212441067532eb664612c13a00d14e9fd0.tar.xz spack-5091dc212441067532eb664612c13a00d14e9fd0.zip | |
r-kegg-db: mark deprecated, removed from bioconductor-3.13 (#28271)
| -rw-r--r-- | var/spack/repos/builtin/packages/r-kegg-db/package.py | 8 |
1 files changed, 5 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/r-kegg-db/package.py b/var/spack/repos/builtin/packages/r-kegg-db/package.py index 4b3bf9695b..a718001a29 100644 --- a/var/spack/repos/builtin/packages/r-kegg-db/package.py +++ b/var/spack/repos/builtin/packages/r-kegg-db/package.py @@ -11,17 +11,19 @@ class RKeggDb(RPackage): A set of annotation maps for KEGG assembled using data from KEGG.""" - # NOTE: The KEGG.db package is deprecated + # NOTE: The KEGG.db package was removed in Bioconductor-3.13 homepage = "https://www.bioconductor.org/packages/KEGG.db/" url = "https://www.bioconductor.org/packages/release/data/annotation/src/contrib/KEGG.db_3.2.3.tar.gz" version('3.2.4', sha256='2e60d1b664cbd1491cc00ed13a22904706c5a4651150f70daca04bf3ba9ead88', - url='https://bioconductor.org/packages/3.12/data/annotation/src/contrib/KEGG.db_3.2.4.tar.gz') + url='https://bioconductor.org/packages/3.12/data/annotation/src/contrib/KEGG.db_3.2.4.tar.gz', + deprecated=True) version('3.2.3', sha256='02ea4630a3ec06a8d9a6151627c96d3f71dfc7e8857800bb5c0cdb6a838d6963', - url='https://bioconductor.org/packages/3.10/data/annotation/src/contrib/KEGG.db_3.2.3.tar.gz') + url='https://bioconductor.org/packages/3.10/data/annotation/src/contrib/KEGG.db_3.2.3.tar.gz', + deprecated=True) depends_on('r@2.7.0:', type=('build', 'run')) depends_on('r-annotationdbi@1.34.3:', type=('build', 'run')) |