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| author | snehring <snehring@users.noreply.github.com> | 2022-05-11 12:38:24 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-05-11 19:38:24 +0200 |
| commit | 8bd893367d259c8c089e77d08c0e90ae9439caa2 (patch) | |
| tree | cee3cda03eab18bffa73be7fe52b2d4f8ca8d469 | |
| parent | 2ed542b7445f013a50d74e055be1f2c065b846c6 (diff) | |
| download | spack-8bd893367d259c8c089e77d08c0e90ae9439caa2.tar.gz spack-8bd893367d259c8c089e77d08c0e90ae9439caa2.tar.bz2 spack-8bd893367d259c8c089e77d08c0e90ae9439caa2.tar.xz spack-8bd893367d259c8c089e77d08c0e90ae9439caa2.zip | |
sentieon-genomics: add version 202112.02, remove manual download (#30145)
| -rw-r--r-- | var/spack/repos/builtin/packages/sentieon-genomics/package.py | 21 |
1 files changed, 11 insertions, 10 deletions
diff --git a/var/spack/repos/builtin/packages/sentieon-genomics/package.py b/var/spack/repos/builtin/packages/sentieon-genomics/package.py index dea21f1095..4c21466a18 100644 --- a/var/spack/repos/builtin/packages/sentieon-genomics/package.py +++ b/var/spack/repos/builtin/packages/sentieon-genomics/package.py @@ -3,8 +3,6 @@ # # SPDX-License-Identifier: (Apache-2.0 OR MIT) -import os.path - from spack import * @@ -12,20 +10,23 @@ class SentieonGenomics(Package): """Sentieon provides complete solutions for secondary DNA analysis. Our software improves upon BWA, GATK, Mutect, and Mutect2 based pipelines. The Sentieon tools are deployable on any CPU-based computing system. + + Use of this software is subject to the EULA at: + https://www.sentieon.com/EULA/eula-aws.html + Please set the path to the sentieon license server with: export SENTIEON_LICENSE=[FQDN]:[PORT] - - Note: A manual download is required. - Spack will search your current directory for the download file. - Alternatively, add this file to a mirror so that Spack can find it. - For instructions on how to set up a mirror, see - https://spack.readthedocs.io/en/latest/mirrors.html""" + """ homepage = "https://www.sentieon.com/" - url = "file://{0}/sentieon-genomics-201808.01.tar.gz".format(os.getcwd()) - manual_download = True + # url is from the permalink documented in dockerfile at + # https://github.com/Sentieon/sentieon-docker/blob/master/Dockerfile + # See also: https://github.com/spack/spack/pull/30145/files#r853275635 + url = "https://s3.amazonaws.com/sentieon-release/software/sentieon-genomics-201808.01.tar.gz" + maintainers = ['snehring'] + version('202112.02', sha256='033943df7958550fd42b410d34ae91a8956a905fc90ca8baa93d2830f918872c') version('201808.07', sha256='fb66b18a7b99e44968eb2c3a6a5b761d6b1e70fba9f7dfc4e5db3a74ab3d3dd9') version('201808.01', sha256='6d77bcd5a35539549b28eccae07b19a3b353d027720536e68f46dcf4b980d5f7') |