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authorAxel Huebl <axel.huebl@plasma.ninja>2016-08-29 16:58:19 +0200
committerAxel Huebl <axel.huebl@plasma.ninja>2016-08-29 17:16:15 +0200
commit4bd863761a6b134090499bd1eddda1fd4299b556 (patch)
treed3dc453f96c5da12992c1d809b31c44506439ed8
parent31cab4bae2e9a0a868a972bfe6ebffce713975cc (diff)
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Update ADIOS Package
This PR updates the ADIOS package. **Changes:** - add latest stable release `1.10.0` - add previous versions (hashes) - add default license header - add build options (shamelessly taken from HDF5 package) - add validation for excisting FC (as in HDF5) and make optional - handle mxml dependency correctly (not required in 1.10.0+) - add `CFLAGS=-fPIC` to build shared (python) libs in ADIOS' lib - remove `-DMPICH_IGNORE_CXX_SEEK` since it is normally not required - remove `MPICC/CXX?FC` since `--with-mpi` just performs well - add transforms: - `zlib`: useful (optional) default - `szip`: optional (compile often broken) - add transports that are not as performant as the `.bp` format: - `hdf5`: non-default - `netcdf`: non-default, close #1610
-rw-r--r--var/spack/repos/builtin/packages/adios/package.py118
1 files changed, 104 insertions, 14 deletions
diff --git a/var/spack/repos/builtin/packages/adios/package.py b/var/spack/repos/builtin/packages/adios/package.py
index 59e0a451a9..f589119d7f 100644
--- a/var/spack/repos/builtin/packages/adios/package.py
+++ b/var/spack/repos/builtin/packages/adios/package.py
@@ -1,6 +1,30 @@
-import os
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
from spack import *
+import os
class Adios(Package):
@@ -12,30 +36,96 @@ class Adios(Package):
"""
homepage = "http://www.olcf.ornl.gov/center-projects/adios/"
- url = "https://github.com/ornladios/ADIOS/archive/v1.9.0.tar.gz"
+ url = "https://github.com/ornladios/ADIOS/archive/v1.10.0.tar.gz"
+
+ version('1.10.0', 'eff450a4c0130479417cfd63186957f3')
+ version('1.9.0' , '310ff02388bbaa2b1c1710ee970b5678')
+ version('1.8.0' , 'c9116ec31e6b386f0e6ea5ab675c57e9')
+ version('1.7.0' , '266897ee3a390985d840bbe2935b4293')
+ version('1.6.0' , 'b3c735f3afbf552ec0d5e8152bffd778')
+
+ variant('shared', default=True,
+ description='Builds a shared version of the library')
- version('1.9.0', '310ff02388bbaa2b1c1710ee970b5678')
+ variant('fortran', default=True,
+ description='Enable Fortran bindings support')
+
+ variant('mpi', default=False, description='Enable MPI support')
+ variant('infiniband', default=False, description='Enable infiniband support')
+
+ variant('zlib', default=True, description='Enable szip transform support')
+ variant('szip', default=False, description='Enable szip transform support')
+ variant('hdf5', default=False, description='Enable HDF5 transport support')
+ variant('netcdf', default=False, description='Enable NetCDF transport support')
# Lots of setting up here for this package
# module swap PrgEnv-intel PrgEnv-$COMP
# module load cray-netcdf/4.3.3.1
# module load cray-hdf5/1.8.14
# module load python/2.7.10
- depends_on('hdf5')
- depends_on('mxml')
+
+ depends_on('mpi', when='+mpi')
+ # shipped within ADIOS 1.10.0+
+ depends_on('mxml', when='@:1.9.0')
+ # optional transformations
+ depends_on('zlib', when='+zlib')
+ depends_on('szip', when='+szip')
+ # optional transports
+ depends_on('hdf5', when='+hdf5')
+ depends_on('netcdf', when='+netcdf')
+
+ def validate(self, spec):
+ """
+ Checks if incompatible variants have been activated at the same time
+ :param spec: spec of the package
+ :raises RuntimeError: in case of inconsistencies
+ """
+ if '+fortran' in spec and not self.compiler.fc:
+ msg = 'cannot build a fortran variant without a fortran compiler'
+ raise RuntimeError(msg)
def install(self, spec, prefix):
- configure_args = ["--prefix=%s" % prefix,
- "--with-mxml=%s" % spec['mxml'].prefix,
- "--with-hdf5=%s" % spec['hdf5'].prefix,
- "--with-netcdf=%s" % os.environ["NETCDF_DIR"],
- "--with-infiniband=no",
- "MPICC=cc", "MPICXX=CC", "MPIFC=ftn",
- "CPPFLAGS=-DMPICH_IGNORE_CXX_SEEK"]
+ self.validate(spec)
+ # Handle compilation after spec validation
+ extra_args = []
+
+ # required, otherwise building its python bindings on ADIOS will fail
+ extra_args.append("CFLAGS=-fPIC")
+
+ # MXML is shipped within ADIOS in 1.10.0+
+ if spec.satisfies('@:1.9.0'):
+ extra_args.append('--with-mxml=%s' % spec['mxml'].prefix)
+
+ if '+shared' in spec:
+ extra_args.append('--enable-shared')
+
+ if '+mpi' in spec:
+ extra_args.append('--with-mpi')
+ if '+infiniband' in spec:
+ extra_args.append('--with-infiniband')
+ else:
+ extra_args.append('--with-infiniband=no')
+
+ if '+fortran' in spec:
+ extra_args.append('--enable-fortran')
+ else:
+ extra_args.append('--disable-fortran')
+
+ if '+zlib' in spec:
+ extra_args.append('--with-zlib=%s' % spec['zlib'].prefix)
+ if '+szip' in spec:
+ extra_args.append('--with-szip=%s' % spec['szip'].prefix)
+ if '+hdf5' in spec:
+ extra_args.append('--with-hdf5=%s' % spec['hdf5'].prefix)
+ if '+netcdf' in spec:
+ extra_args.append('--with-netcdf=%s' % os.environ["NETCDF_DIR"])
if spec.satisfies('%gcc'):
- configure_args.extend(["CC=gcc", "CXX=g++", "FC=gfortran"])
+ extra_args.extend(["CC=gcc", "CXX=g++"])
+ if '+fortran' in spec:
+ extra_args.extend(["FC=gfortran"])
- configure(*configure_args)
+ configure("--prefix=%s" % prefix,
+ *extra_args)
make()
make("install")