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authorAudrey Thoma <las_thoma15@iastate.edu>2017-10-04 11:28:28 -0500
committerChristoph Junghans <christoph.junghans@gmail.com>2017-10-04 10:28:28 -0600
commit727e542b804152ee3b9e35f191144f31e3c48164 (patch)
tree6e7ae99cab0ae009487baeb9b34b515448f15377
parent1d8b77b600877a8ae0700c5ab57b5a2d87fbeb17 (diff)
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tassel: new package (#5583)
-rw-r--r--var/spack/repos/builtin/packages/tassel/package.py45
1 files changed, 45 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/tassel/package.py b/var/spack/repos/builtin/packages/tassel/package.py
new file mode 100644
index 0000000000..5c0f946504
--- /dev/null
+++ b/var/spack/repos/builtin/packages/tassel/package.py
@@ -0,0 +1,45 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Tassel(Package):
+ """TASSEL is a software package to evaluate traits associations,
+ evolutionary patterns, and linkage disequilibrium."""
+
+ homepage = "http://www.maizegenetics.net/tassel"
+ url = "https://bitbucket.org/tasseladmin/tassel-5-source/get/master.tar.gz"
+
+ version('2017-07-22', git='https://bitbucket.org/tasseladmin/tassel-5-standalone.git',
+ commit='ae96ae75c3c9a9e8026140b6c775fa4685bdf531')
+
+ depends_on('java', type=('build', 'run'))
+ depends_on('perl', type=('build', 'run'))
+
+ def install(self, spec, prefix):
+ install_tree('.', prefix.bin)
+
+ def setup_environment(self, spack_env, run_env):
+ run_env.prepend_path('CLASSPATH', prefix.bin.lib)