Features/mindthegap (#7648)

* added htslib 1.7 and checksum

* mindthegap:  New package

1 files changed, 41 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/mindthegap/package.py b/var/spack/repos/builtin/packages/mindthegap/package.py
new file mode 100644
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+++ b/var/spack/repos/builtin/packages/mindthegap/package.py
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+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Mindthegap(CMakePackage):
+    """MindTheGap is a software that performs integrated detection and
+       assembly of genomic insertion variants in NGS read datasets with
+       respect to a reference genome."""
+
+    homepage = "https://gatb.inria.fr/software/mind-the-gap/"
+    url      = "https://github.com/GATB/MindTheGap.git"
+
+    version('2.0.2',
+            tags='v2.0.2',
+            git='https://github.com/GATB/MindTheGap.git',
+            submodules=True)
+
+    depends_on('zlib')