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| author | snehring <7978778+snehring@users.noreply.github.com> | 2023-05-15 12:14:58 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-05-15 10:14:58 -0700 |
| commit | c9849dd41d3b774acabeddc5d8099ee2e6b123e5 (patch) | |
| tree | 98fc613a3a1c12a9dbdb4aeb32a8ff5799e9cc97 | |
| parent | d44e97d3f2ebb37de599d5235f1ab50aa08d6b21 (diff) | |
| download | spack-c9849dd41d3b774acabeddc5d8099ee2e6b123e5.tar.gz spack-c9849dd41d3b774acabeddc5d8099ee2e6b123e5.tar.bz2 spack-c9849dd41d3b774acabeddc5d8099ee2e6b123e5.tar.xz spack-c9849dd41d3b774acabeddc5d8099ee2e6b123e5.zip | |
tmalign: new version 20220412 (#37645)
| -rw-r--r-- | var/spack/repos/builtin/packages/tmalign/package.py | 29 |
1 files changed, 26 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/tmalign/package.py b/var/spack/repos/builtin/packages/tmalign/package.py index 48b517ed2b..c27a79a3d8 100644 --- a/var/spack/repos/builtin/packages/tmalign/package.py +++ b/var/spack/repos/builtin/packages/tmalign/package.py @@ -10,13 +10,36 @@ class Tmalign(Package): """TM-align is an algorithm for sequence-order independent protein structure comparisons.""" - homepage = "https://zhanglab.ccmb.med.umich.edu/TM-align" - url = "http://zhanglab.ccmb.med.umich.edu/TM-align/TM-align-C/TMalignc.tar.gz" + homepage = "https://zhanggroup.org/TM-align/" + url = "https://zhanggroup.org/TM-align/TMalign.cpp" + maintainers("snehring") + + version( + "20220412", + sha256="09227c46705ca8cf7c922a6e1672c34d7ed4daba32e5c7c484306808db54117a", + expand=False, + ) version( - "2016-05-25", sha256="ce7f68289f3766d525afb0a58e3acfc28ae05f538d152bd33d57f8708c60e2af" + "2016-05-25", + sha256="ce7f68289f3766d525afb0a58e3acfc28ae05f538d152bd33d57f8708c60e2af", + url="http://zhanglab.ccmb.med.umich.edu/TM-align/TM-align-C/TMalignc.tar.gz", + deprecated=True, ) + variant("fast-math", default=False, when="@20220412:") + + with when("@20220412:"): + phases = ["build", "install"] + + def build(self, spec, prefix): + cxx = Executable(self.compiler.cxx) + args = ["-O3"] + if spec.satisfies("+fast-math"): + args.append("-ffast-math") + args.extend(["-lm", "-o", "TMalign", "TMalign.cpp"]) + cxx(*args) + def install(self, spec, prefix): mkdirp(prefix.bin) install("TMalign", prefix.bin) |