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| author | Audrey Thoma <las_thoma15@iastate.edu> | 2017-08-10 17:51:46 -0500 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2017-08-10 17:51:46 -0500 |
| commit | e99834df6abb0e5f256db9a84b6d6e4ba5d5bb18 (patch) | |
| tree | fe2984577d55095a2aeb1caa773efdeb98765ca4 | |
| parent | 887e4724c2f200caee11be762c5b2216c4dedefb (diff) | |
| download | spack-e99834df6abb0e5f256db9a84b6d6e4ba5d5bb18.tar.gz spack-e99834df6abb0e5f256db9a84b6d6e4ba5d5bb18.tar.bz2 spack-e99834df6abb0e5f256db9a84b6d6e4ba5d5bb18.tar.xz spack-e99834df6abb0e5f256db9a84b6d6e4ba5d5bb18.zip | |
fastphase: new package (#5059)
| -rw-r--r-- | var/spack/repos/builtin/packages/fastphase/package.py | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/fastphase/package.py b/var/spack/repos/builtin/packages/fastphase/package.py new file mode 100644 index 0000000000..69ba89022c --- /dev/null +++ b/var/spack/repos/builtin/packages/fastphase/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Fastphase(Package): + """Software for haplotype reconstruction, and estimating missing genotypes + from population data.""" + + homepage = "http://stephenslab.uchicago.edu/software.html" + url = "http://scheet.org/code/Linuxfp.tar.gz" + + version('2016-03-30', 'b48731eed9b8d0a5a321f970c5c20d8c') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('fastPHASE', prefix.bin) |