summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorlingnanyuan <1297162327@qq.com>2017-12-06 19:29:04 -0600
committerChristoph Junghans <christoph.junghans@gmail.com>2017-12-06 18:29:04 -0700
commit96c95db793a91497de9e5626f8587d22de2b257f (patch)
tree7d3a649a91a2935b1dbeafad7c3057b43dc3cdf4
parent9a4dd413bbdf185bdaea27813267900ea352f4d8 (diff)
downloadspack-96c95db793a91497de9e5626f8587d22de2b257f.tar.gz
spack-96c95db793a91497de9e5626f8587d22de2b257f.tar.bz2
spack-96c95db793a91497de9e5626f8587d22de2b257f.tar.xz
spack-96c95db793a91497de9e5626f8587d22de2b257f.zip
r-org-hs-eg-db: Create new package. (#6581)
-rw-r--r--var/spack/repos/builtin/packages/r-org-hs-eg-db/package.py38
1 files changed, 38 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-org-hs-eg-db/package.py b/var/spack/repos/builtin/packages/r-org-hs-eg-db/package.py
new file mode 100644
index 0000000000..64c788396e
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-org-hs-eg-db/package.py
@@ -0,0 +1,38 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class ROrgHsEgDb(RPackage):
+ """Genome wide annotation for Human, primarily based on mapping
+ using Entrez Gene identifiers."""
+
+ homepage = "http://www.example.co://www.bioconductor.org/packages/org.Hs.eg.db/i"
+ url = "https://www.bioconductor.org/packages/3.5/data/annotation/src/contrib/org.Hs.eg.db_3.4.1.tar.gz"
+
+ version('3.4.1', '0a987ef7d6167df70e91e6f48145e41c')
+
+ depends_on('r@3.4.0:3.4.9', when='@3.4.1')
+ depends_on('r-annotationdbi', type=('build', 'run'))