py-tetoolkit: Create new package (#6673)

1 files changed, 42 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/py-tetoolkit/package.py b/var/spack/repos/builtin/packages/py-tetoolkit/package.py
new file mode 100644
index 0000000000..3467489182
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-tetoolkit/package.py
@@ -0,0 +1,42 @@
+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PyTetoolkit(PythonPackage):
+    """TEToolkit is a software package that utilizes both unambiguously
+       (uniquely) and ambiguously (multi-) mapped reads to perform
+       differential enrichment analyses from high throughput sequencing
+       experiments."""
+
+    homepage = "http://hammelllab.labsites.cshl.edu/software"
+    url      = "https://pypi.io/packages/source/T/TEToolkit/TEToolkit-1.5.1.tar.gz"
+
+    version('1.5.1', '05745b2d5109911e95593e423446a831')
+
+    depends_on('py-setuptools')
+    depends_on('python@2.7:', type=('build', 'run'))
+    depends_on('py-pysam', type=('build', 'run'))
+    depends_on('r-deseq', type=('build', 'run'))