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| author | George Hartzell <hartzell@alerce.com> | 2018-11-27 17:22:14 -0800 |
|---|---|---|
| committer | Peter Scheibel <scheibel1@llnl.gov> | 2018-11-27 17:22:14 -0800 |
| commit | e4e980ee979b386cdd7fba835a34d0d964f73fe8 (patch) | |
| tree | a2f138b3855a56a78c8331ec575b79a85afa3eb0 | |
| parent | 33b112a60d88df0c53c125ae4de8202c72e298c6 (diff) | |
| download | spack-e4e980ee979b386cdd7fba835a34d0d964f73fe8.tar.gz spack-e4e980ee979b386cdd7fba835a34d0d964f73fe8.tar.bz2 spack-e4e980ee979b386cdd7fba835a34d0d964f73fe8.tar.xz spack-e4e980ee979b386cdd7fba835a34d0d964f73fe8.zip | |
bcl2fastq2 package: recursively delete after copy (#9959)
Fixes #9944
73c978d replaced a move with a copy, which cased rmdir to fail (as
it expects an empty directory). This switches to use `shutil.rmtree`
instead.
| -rw-r--r-- | var/spack/repos/builtin/packages/bcl2fastq2/package.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/var/spack/repos/builtin/packages/bcl2fastq2/package.py b/var/spack/repos/builtin/packages/bcl2fastq2/package.py index f3eb3175ac..1b07e50d54 100644 --- a/var/spack/repos/builtin/packages/bcl2fastq2/package.py +++ b/var/spack/repos/builtin/packages/bcl2fastq2/package.py @@ -5,6 +5,7 @@ from spack import * import os +import shutil import glob import llnl.util.tty as tty @@ -71,11 +72,10 @@ class Bcl2fastq2(Package): tty.msg("The tarball has already been unpacked") else: tty.msg("Unpacking bcl2fastq2 tarball") - tty.msg("cwd sez: {0}".format(os.getcwd())) tarball = glob.glob(join_path('spack-expanded-archive', 'bcl2fastq2*.tar.gz'))[0] copy(tarball, '.') - os.rmdir('spack-expanded-archive') + shutil.rmtree('spack-expanded-archive') tar = which('tar') tarball = os.path.basename(tarball) tar('-xf', tarball) |