new package (#33262)

1 files changed, 36 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/py-deepsig-biocomp/package.py b/var/spack/repos/builtin/packages/py-deepsig-biocomp/package.py
new file mode 100644
index 0000000000..200812735e
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-deepsig-biocomp/package.py
@@ -0,0 +1,36 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+
+from spack.package import *
+
+
+class PyDeepsigBiocomp(PythonPackage):
+    """DeepSig - Predictor of signal peptides
+    in proteins based on deep learning"""
+
+    homepage = "https://deepsig.biocomp.unibo.it"
+
+    url = "https://github.com/BolognaBiocomp/deepsig/archive/refs/tags/v1.2.5.tar.gz"
+
+    version("1.2.5", sha256="e954b815d63c221c564c7d3fe27123d7cd2c39b191d6107369ab095d506496e0")
+
+    depends_on("python@3.8", type=("build", "run"))
+    depends_on("py-setuptools", type="build")
+    depends_on("py-biopython@1.78:", type=("build", "run"))
+    depends_on("py-keras@2.4.3", type=("build", "run"))
+    depends_on("py-tensorflow@2.2.0", type=("build", "run"))
+    depends_on("py-tensorboard", type=("build", "run"))
+
+    @run_after("install")
+    def create_share_folder(self):
+        share_dir = join_path(self.prefix, "share", "deepsig")
+        mkdirp(share_dir)
+        mv = which("mv")
+        for d in ("models", "tools"):
+            mv(d, share_dir)
+
+    def setup_run_environment(self, env):
+        env.set("DEEPSIG_ROOT", self.prefix.share.deepsig)