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authorDenis Davydov <davydden@gmail.com>2017-12-08 10:37:54 +0100
committerMassimiliano Culpo <massimiliano.culpo@gmail.com>2017-12-08 10:37:54 +0100
commit23d56a75abd852a9daf15db61b38bb5804026b75 (patch)
treec3690556e0a8a5598aa1776a3487d812641fe477
parent96476a32e545184908f64aac41b23987255138e2 (diff)
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dealii: update boost dependency (#6586)
(i) blacklst 1.65.0 due to issues on Ubuntu with gcc 5.4.0 (ii) add a patch for 1.65.1 to fix serialization (iii) simplify boost's depends_on()
-rw-r--r--var/spack/repos/builtin/packages/dealii/boost_1.65.1_singleton.patch43
-rw-r--r--var/spack/repos/builtin/packages/dealii/package.py36
2 files changed, 57 insertions, 22 deletions
diff --git a/var/spack/repos/builtin/packages/dealii/boost_1.65.1_singleton.patch b/var/spack/repos/builtin/packages/dealii/boost_1.65.1_singleton.patch
new file mode 100644
index 0000000000..fffd85aa1a
--- /dev/null
+++ b/var/spack/repos/builtin/packages/dealii/boost_1.65.1_singleton.patch
@@ -0,0 +1,43 @@
+diff --git a/boost/serialization/singleton.hpp b/boost/serialization/singleton.hpp
+index b50afed..e891d55 100644
+--- a/boost/serialization/singleton.hpp
++++ b/boost/serialization/singleton.hpp
+@@ -91,7 +91,7 @@ class BOOST_SYMBOL_VISIBLE singleton_module :
+ public boost::noncopyable
+ {
+ private:
+- BOOST_SERIALIZATION_DECL BOOST_DLLEXPORT static bool & get_lock() BOOST_USED;
++ BOOST_DLLEXPORT static bool & get_lock() BOOST_USED;
+ public:
+ BOOST_DLLEXPORT static void lock(){
+ get_lock() = true;
+@@ -115,7 +115,7 @@ private:
+ // use a wrapper so that types T with protected constructors
+ // can be used
+ class singleton_wrapper : public T {};
+- static singleton_wrapper t;
++ static singleton_wrapper* t = new singleton_wrapper;
+ // refer to instance, causing it to be instantiated (and
+ // initialized at startup on working compilers)
+ BOOST_ASSERT(! is_destroyed());
+@@ -125,7 +125,9 @@ private:
+ // our usage/implementation of "locking" and introduce uncertainty into
+ // the sequence of object initializaition.
+ use(& m_instance);
+- return static_cast<T &>(t);
++ if (!t)
++ t = new singleton_wrapper;
++ return static_cast<T &>(*t);
+ }
+ static bool & get_is_destroyed(){
+ static bool is_destroyed;
+@@ -147,6 +149,9 @@ public:
+ get_is_destroyed() = false;
+ }
+ BOOST_DLLEXPORT ~singleton() {
++ if (!get_is_destroyed()) {
++ delete &(get_instance());
++ }
+ get_is_destroyed() = true;
+ }
+ };
diff --git a/var/spack/repos/builtin/packages/dealii/package.py b/var/spack/repos/builtin/packages/dealii/package.py
index 7dc23d75fc..bed9d53afa 100644
--- a/var/spack/repos/builtin/packages/dealii/package.py
+++ b/var/spack/repos/builtin/packages/dealii/package.py
@@ -89,30 +89,22 @@ class Dealii(CMakePackage, CudaPackage):
# required dependencies, light version
depends_on('blas')
- # Boost 1.58 is blacklisted, see
+ # Boost 1.58 is blacklisted, require at least 1.59, see
# https://github.com/dealii/dealii/issues/1591
- # Require at least 1.59
- # There are issues with 1.65.1 but not with 1.65.0:
+ # There are issues with 1.65.1 and 1.65.0:
# https://github.com/dealii/dealii/issues/5262
- # +python won't affect @:8.4.2
- # FIXME: once concretizer can unite unconditional and
- # conditional dependencies, simplify to:
- # depends_on('boost@1.59.0+thread+system+serialization+iostreams')
- # depends_on('boost+mpi', when='+mpi')
- # depends_on('boost+python', when='+python')
- depends_on('boost@1.59.0:1.63,1.65.0,1.66:+thread+system+serialization+iostreams',
- when='@:8.4.2~mpi')
- depends_on('boost@1.59.0:1.63,1.65.0,1.66:+thread+system+serialization+iostreams+mpi',
- when='@:8.4.2+mpi')
- # since @8.5.0: (and @develop) python bindings are introduced:
- depends_on('boost@1.59.0:1.63,1.65.0,1.66:+thread+system+serialization+iostreams',
- when='@8.5.0:~mpi~python')
- depends_on('boost@1.59.0:1.63,1.65.0,1.66:+thread+system+serialization+iostreams+mpi',
- when='@8.5.0:+mpi~python')
- depends_on('boost@1.59.0:1.63,1.65.0,1.66:+thread+system+serialization+iostreams+python',
- when='@8.5.0:~mpi+python')
- depends_on('boost@1.59.0:1.63,1.65.0,1.66:+thread+system+serialization+iostreams+mpi+python',
- when='@8.5.0:+mpi+python')
+ # we take the patch from https://github.com/boostorg/serialization/pull/79
+ # more precisely its variation https://github.com/dealii/dealii/pull/5572#issuecomment-349742019
+ depends_on('boost@1.59.0:1.63,1.65.1+thread+system+serialization+iostreams',
+ patches=patch('boost_1.65.1_singleton.patch',
+ level=1,
+ when='@1.65.1'),
+ when='~python')
+ depends_on('boost@1.59.0:1.63,1.65.1+thread+system+serialization+iostreams+python',
+ patches=patch('boost_1.65.1_singleton.patch',
+ level=1,
+ when='@1.65.1'),
+ when='+python')
# bzip2 is not needed since 9.0
depends_on('bzip2', when='@:8.99')
depends_on('lapack')