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authorDarach Golden <darachg@gmail.com>2017-06-28 19:22:18 +0100
committerAdam J. Stewart <ajstewart426@gmail.com>2017-06-28 13:22:18 -0500
commit6550aeeafcacad6bba5e4b44e130fd3b40e42bdd (patch)
treec16fef4241095d3e01dbcdafd1ebd866383d8757
parente5c665600cc0fccafaea9eec074660e477910542 (diff)
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Requested changes related to mumps compilation (#4614)
* * add mpii* wrappers for use with intel compilers * in mumps package, scotch is compiled without metis option when ptscotch variant is selected. This removes confusion over which metis.h to use * for intel mkl, add SPACK_COMPILER_EXTRA_RPATHS ending in 'intel64' * scotch lib requires libz when compression is turned on. This caused a link issue on some Ubuntu distributions (not redhat). Change Scotch package to add -lz when needed * * intel-mkl append to SPACK_COMPILER_EXTRA_RPATHS rather than setting * use more concise method to obtain libz libraries for scotch * remove changes to intel mpi * remove commented out depends_on * fix flake8 errors
-rw-r--r--var/spack/repos/builtin/packages/intel-mkl/package.py2
-rw-r--r--var/spack/repos/builtin/packages/mumps/package.py4
-rw-r--r--var/spack/repos/builtin/packages/scotch/package.py7
3 files changed, 10 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/intel-mkl/package.py b/var/spack/repos/builtin/packages/intel-mkl/package.py
index e1b4049ef8..4eaf50dea5 100644
--- a/var/spack/repos/builtin/packages/intel-mkl/package.py
+++ b/var/spack/repos/builtin/packages/intel-mkl/package.py
@@ -142,6 +142,8 @@ class IntelMkl(IntelInstaller):
def setup_dependent_environment(self, spack_env, run_env, dependent_spec):
# set up MKLROOT for everyone using MKL package
spack_env.set('MKLROOT', self.prefix)
+ spack_env.append_path('SPACK_COMPILER_EXTRA_RPATHS',
+ join_path(self.prefix.lib, 'intel64'))
def setup_environment(self, spack_env, run_env):
run_env.set('MKLROOT', self.prefix)
diff --git a/var/spack/repos/builtin/packages/mumps/package.py b/var/spack/repos/builtin/packages/mumps/package.py
index 9d74ec4b6f..60a46723c4 100644
--- a/var/spack/repos/builtin/packages/mumps/package.py
+++ b/var/spack/repos/builtin/packages/mumps/package.py
@@ -61,7 +61,7 @@ class Mumps(Package):
variant('shared', default=True, description='Build shared libraries')
depends_on('scotch + esmumps', when='~ptscotch+scotch')
- depends_on('scotch + esmumps + mpi', when='+ptscotch')
+ depends_on('scotch + esmumps ~ metis + mpi', when='+ptscotch')
depends_on('metis@5:', when='+metis')
depends_on('parmetis', when="+parmetis")
depends_on('blas')
@@ -160,7 +160,7 @@ class Mumps(Package):
'FC = {0}'.format(self.spec['mpi'].mpifc),
"SCALAP = %s" % scalapack.ld_flags,
"MUMPS_TYPE = par"])
- if (self.spec.satisfies('%xl_r' or '%xl')) and self.spec.satisfies('^spectrum-mpi'): # noqa
+ if (self.spec.satisfies('%xl_r' or '%xl')) and self.spec.satisfies('^spectrum-mpi'): # noqa
makefile_conf.extend(
['FL = {0}'.format(self.spec['mpi'].mpicc)])
else:
diff --git a/var/spack/repos/builtin/packages/scotch/package.py b/var/spack/repos/builtin/packages/scotch/package.py
index c776e8560d..8071a9765f 100644
--- a/var/spack/repos/builtin/packages/scotch/package.py
+++ b/var/spack/repos/builtin/packages/scotch/package.py
@@ -81,6 +81,7 @@ class Scotch(Package):
shared = '+shared' in self.spec
libraries = ['libscotch', 'libscotcherr']
+ zlibs = []
if '+mpi' in self.spec:
libraries = ['libptscotch', 'libptscotcherr'] + libraries
@@ -89,9 +90,13 @@ class Scotch(Package):
elif '~mpi+esmumps' in self.spec:
libraries = ['libesmumps'] + libraries
- return find_libraries(
+ scotchlibs = find_libraries(
libraries, root=self.prefix, recurse=True, shared=shared
)
+ if '+compression' in self.spec:
+ zlibs = self.spec['zlib'].libs
+
+ return scotchlibs + zlibs
def patch(self):
self.configure()