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authorJustin Stanley <molecuul@users.noreply.github.com>2018-12-04 17:20:24 -0600
committerAdam J. Stewart <ajstewart426@gmail.com>2018-12-04 17:20:24 -0600
commit87bf5296c38246e051b77ffb082a8881ab3d50c9 (patch)
tree2921b1bbecc770c8058ad2eaa29d84594516a7d7
parent68a0305e13a4ec7df406dfe10f776ffe43fc49dd (diff)
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biobloom: new package at 2.2.0 (#10014)
-rw-r--r--var/spack/repos/builtin/packages/biobloom/package.py27
1 files changed, 27 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/biobloom/package.py b/var/spack/repos/builtin/packages/biobloom/package.py
new file mode 100644
index 0000000000..6aeea90b10
--- /dev/null
+++ b/var/spack/repos/builtin/packages/biobloom/package.py
@@ -0,0 +1,27 @@
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class Biobloom(AutotoolsPackage):
+ """BioBloom Tools (BBT) provides the means to create filters for a given
+ reference and then to categorize sequences."""
+
+ homepage = "https://github.com/bcgsc/biobloom"
+ url = "https://github.com/bcgsc/biobloom/releases/download/2.2.0/biobloomtools-2.2.0.tar.gz"
+
+ version('2.2.0', sha256='5d09f8690f0b6402f967ac09c5b0f769961f3fe3791000f8f73af6af7324f02c')
+
+ depends_on('boost')
+ depends_on('sdsl-lite')
+ depends_on('sparsehash')
+ depends_on('zlib')
+
+ def configure_args(self):
+ # newer versions of sdsl-lite introduce tolerable warnings
+ # they must disabled to allow the build to continue
+
+ return ['CXXFLAGS=-w', 'CPPFLAGS=-w']