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| author | Audrey Thoma <las_thoma15@iastate.edu> | 2017-08-10 20:03:52 -0500 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2017-08-10 20:03:52 -0500 |
| commit | 967370aa0b5a673403aca53cd12837c12b693e1c (patch) | |
| tree | 5ad07b72341ebbf1303b7f3b3153d1c60b8cee73 | |
| parent | 518993431d9c557bad52795ce1d0be0fa7c1219e (diff) | |
| download | spack-967370aa0b5a673403aca53cd12837c12b693e1c.tar.gz spack-967370aa0b5a673403aca53cd12837c12b693e1c.tar.bz2 spack-967370aa0b5a673403aca53cd12837c12b693e1c.tar.xz spack-967370aa0b5a673403aca53cd12837c12b693e1c.zip | |
impute2: new package (#5062)
| -rw-r--r-- | var/spack/repos/builtin/packages/impute2/package.py | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/impute2/package.py b/var/spack/repos/builtin/packages/impute2/package.py new file mode 100644 index 0000000000..b4b0cb20d2 --- /dev/null +++ b/var/spack/repos/builtin/packages/impute2/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Impute2(Package): + """IMPUTE2 is a genotype imputation and haplotype phasing program based on + ideas from Howie et al. 2009.""" + + homepage = "https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#home" + url = "https://mathgen.stats.ox.ac.uk/impute/impute_v2.3.2_x86_64_dynamic.tgz" + + version('2.3.2', '0e1bafb8f63eb5cf9ae02ab761af58aa') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('impute2', prefix.bin) |