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| author | Eric Martin <erimar77@users.noreply.github.com> | 2019-03-12 21:30:30 -0500 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2019-03-12 21:30:30 -0500 |
| commit | ffbc4f199e602b141451ee81d2db59831a35cf18 (patch) | |
| tree | 88198bc72de3a0a1a408c9bc66f76ee42bf2422a | |
| parent | c629a6f780fee0847aada78ff3254567912745b4 (diff) | |
| download | spack-ffbc4f199e602b141451ee81d2db59831a35cf18.tar.gz spack-ffbc4f199e602b141451ee81d2db59831a35cf18.tar.bz2 spack-ffbc4f199e602b141451ee81d2db59831a35cf18.tar.xz spack-ffbc4f199e602b141451ee81d2db59831a35cf18.zip | |
fqtrim: Create new package (#10861)
| -rw-r--r-- | var/spack/repos/builtin/packages/fqtrim/package.py | 25 |
1 files changed, 25 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/fqtrim/package.py b/var/spack/repos/builtin/packages/fqtrim/package.py new file mode 100644 index 0000000000..fb02c9c89c --- /dev/null +++ b/var/spack/repos/builtin/packages/fqtrim/package.py @@ -0,0 +1,25 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Fqtrim(MakefilePackage): + """fqtrim is a versatile stand-alone utility that can be used to trim + adapters, poly-A tails, terminal unknown bases (Ns) and low quality 3' + regions in reads from high-throughput next-generation sequencing + machines.""" + + homepage = "https://ccb.jhu.edu/software/fqtrim/" + url = "http://ccb.jhu.edu/software/fqtrim/dl/fqtrim-0.9.7.tar.gz" + + version('0.9.7', sha256='4951538f69dde14a23fc4841ff020434d26eb9622c4e06b43c068c702aa3d0d6') + + def build(self, spec, prefix): + make('release') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('fqtrim', prefix.bin) |