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| author | snehring <7978778+snehring@users.noreply.github.com> | 2022-12-12 04:31:26 -0600 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-12-12 11:31:26 +0100 |
| commit | 47628521b978360ad2252e8826a381e607ca5544 (patch) | |
| tree | fbb2dbad7d6fcd142dda6ef1f2addebec1441026 | |
| parent | 62da76cb5dca4d52c43bee06230cca6a5882f05d (diff) | |
| download | spack-47628521b978360ad2252e8826a381e607ca5544.tar.gz spack-47628521b978360ad2252e8826a381e607ca5544.tar.bz2 spack-47628521b978360ad2252e8826a381e607ca5544.tar.xz spack-47628521b978360ad2252e8826a381e607ca5544.zip | |
delly2: add v1.1.6 (#34411)
| -rw-r--r-- | var/spack/repos/builtin/packages/delly2/package.py | 27 |
1 files changed, 19 insertions, 8 deletions
diff --git a/var/spack/repos/builtin/packages/delly2/package.py b/var/spack/repos/builtin/packages/delly2/package.py index 112d1cd24e..d51b4d09dc 100644 --- a/var/spack/repos/builtin/packages/delly2/package.py +++ b/var/spack/repos/builtin/packages/delly2/package.py @@ -4,7 +4,6 @@ # SPDX-License-Identifier: (Apache-2.0 OR MIT) from spack.package import * -from spack.pkg.builtin.boost import Boost class Delly2(MakefilePackage): @@ -14,19 +13,27 @@ class Delly2(MakefilePackage): short-read massively parallel sequencing data..""" homepage = "https://github.com/dellytools/delly" + url = "https://github.com/dellytools/delly/archive/refs/tags/v1.1.6.tar.gz" git = "https://github.com/dellytools/delly.git" + maintainers = ["snehring"] + version("1.1.6", sha256="08961e9c81431eb486476fa71eea94941ad24ec1970b71e5a7720623a39bfd2a") version("0.9.1", tag="v0.9.1") version("2017-08-03", commit="e32a9cd55c7e3df5a6ae4a91f31a0deb354529fc", deprecated=True) variant("openmp", default=False, description="Build with openmp support") depends_on("htslib", type=("build", "link")) - depends_on("boost", type=("build", "link")) - # TODO: replace this with an explicit list of components of Boost, - # for instance depends_on('boost +filesystem') - # See https://github.com/spack/spack/pull/22303 for reference - depends_on(Boost.with_default_variants) + depends_on( + "boost@:1.78.0+iostreams+filesystem+system+program_options+date_time", + when="@:0.9.1", + type=("build", "link"), + ) + depends_on( + "boost+iostreams+filesystem+system+program_options+date_time", + when="@0.9.1:", + type=("build", "link"), + ) depends_on("bcftools", type="run") def edit(self, spec, prefix): @@ -49,13 +56,17 @@ class Delly2(MakefilePackage): makefile.filter(".boost:", "# .boost:") else: env["EBROOTHTSLIB"] = self.spec["htslib"].prefix - filter_file("BUILT_PROGRAMS =.*$", "BUILT_PROGRAMS = src/delly src/dpe", "Makefile") + if self.spec.satisfies("@0.9.1"): + filter_file( + "BUILT_PROGRAMS =.*$", "BUILT_PROGRAMS = src/delly src/dpe", "Makefile" + ) filter_file("${SUBMODULES}", "", "Makefile", string=True) def install(self, spec, prefix): mkdirp(prefix.bin) with working_dir("src"): install("delly", prefix.bin) - install("dpe", prefix.bin) + if self.spec.satisfies("@0.9.1") or self.spec.satisfies("@2017-08-03"): + install("dpe", prefix.bin) if self.spec.satisfies("@2017-08-03"): install("cov", prefix.bin) |