summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorbecker33 <becker33@llnl.gov>2016-08-05 10:25:19 -0700
committerGitHub <noreply@github.com>2016-08-05 10:25:19 -0700
commit8e20a14945ef7197286f61799902dd1d9589fb2e (patch)
tree5071bc949c6020996b11017a9d34d70d2660898b
parentf403f256ca693350e6cda44b823a030f8970b28b (diff)
parente12d7aaddab5453bcefabb90cb01aef130d48d15 (diff)
downloadspack-8e20a14945ef7197286f61799902dd1d9589fb2e.tar.gz
spack-8e20a14945ef7197286f61799902dd1d9589fb2e.tar.bz2
spack-8e20a14945ef7197286f61799902dd1d9589fb2e.tar.xz
spack-8e20a14945ef7197286f61799902dd1d9589fb2e.zip
Merge pull request #1453 from hartzell/feature/add-package-for-seqtk
Add package for seqtk
-rw-r--r--var/spack/repos/builtin/packages/seqtk/package.py43
1 files changed, 43 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/seqtk/package.py b/var/spack/repos/builtin/packages/seqtk/package.py
new file mode 100644
index 0000000000..ca168c176c
--- /dev/null
+++ b/var/spack/repos/builtin/packages/seqtk/package.py
@@ -0,0 +1,43 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Seqtk(Package):
+ """Toolkit for processing sequences in FASTA/Q formats."""
+
+ homepage = "https://github.com/lh3/seqtk"
+ url = "https://github.com/lh3/seqtk/archive/v1.1.tar.gz"
+
+ version('1.2', '255ffe05bf2f073dc57abcff97f11a37')
+ version('1.1', 'ebf5cc57698a217150c2250494e039a2')
+
+ depends_on('zlib')
+
+ def install(self, spec, prefix):
+ make()
+ mkdirp(prefix.bin)
+ install('seqtk', prefix.bin)
+ set_executable(join_path(prefix.bin, 'seqtk'))