hybpiper: change package type, add version 2.1.8 (#45262)

Signed-off-by: Shane Nehring <snehring@iastate.edu>

1 files changed, 30 insertions, 3 deletions

diff --git a/var/spack/repos/builtin/packages/hybpiper/package.py b/var/spack/repos/builtin/packages/hybpiper/package.py
index db890c6f73..d1b6e1a96b 100644
--- a/var/spack/repos/builtin/packages/hybpiper/package.py
+++ b/var/spack/repos/builtin/packages/hybpiper/package.py
@@ -7,7 +7,7 @@
 from spack.package import *
 
 
-class Hybpiper(Package):
+class Hybpiper(PythonPackage, Package):
     """HybPiper was designed for targeted sequence capture, in which DNA
     sequencing libraries are enriched for gene regions of interest,
     especially for phylogenetics. HybPiper is a suite of Python scripts
@@ -17,24 +17,51 @@ class Hybpiper(Package):
     homepage = "https://github.com/mossmatters/HybPiper"
     url = "https://github.com/mossmatters/HybPiper/archive/v1.2.0.tar.gz"
     git = "https://github.com/mossmatters/HybPiper/HybPiper.git"
+    maintainers("snehring")
 
     license("GPL-3.0-or-later")
 
+    version("2.1.8", sha256="ff358a560d6dbbec4fdac67457451cb4e6ca21b8661044c43902aa013d805e47")
     version("1.3.1", sha256="7ca07a9390d1ca52c72721774fa220546f18d3fa3b58500f68f3b2d89dbc0ecf")
     version("1.2.0", sha256="34c7b324e9bcacb6ccfe87dc50615d6f93866433b61a59291707efa858b6df57")
 
+    build_system(
+        conditional("python_pip", when="@2.1:"),
+        conditional("generic", when="@:1.3.1"),
+        default="python_pip",
+    )
+
     depends_on("python@2.7:", type=("build", "run"))
+    depends_on("python@3.9:", type=("build", "run"), when="@2.1:")
+
     depends_on("py-biopython", type=("build", "run"))
+    depends_on("py-biopython@1.80:", type=("build", "run"), when="@2.1:")
+    depends_on("py-matplotlib", type=("build", "run"), when="@2.1:")
+    depends_on("py-pandas", type=("build", "run"), when="@2.1:")
+    depends_on("py-pebble", type=("build", "run"), when="@2.1:")
+    depends_on("py-progressbar2", type=("build", "run"), when="@2.1:")
+    depends_on("py-psutil", type=("build", "run"), when="@2.1:")
+    depends_on("py-scipy", type=("build", "run"), when="@2.1:")
+    depends_on("py-seaborn", type=("build", "run"), when="@2.1:")
+
     depends_on("exonerate")
+    depends_on("exonerate@2.4:", when="@2.1:")
+    depends_on("bbmap", when="@2.1:")
     depends_on("blast-plus")
-    depends_on("spades")
-    depends_on("parallel")
+    depends_on("blast-plus@2.9.0:", when="@2.1:")
     depends_on("bwa")
+    depends_on("diamond", when="@2.1:")
+    depends_on("mafft", when="@2.1:")
+    depends_on("parallel")
     depends_on("samtools")
+    depends_on("samtools@1.14", when="@2.1:")
+    depends_on("spades")
+    depends_on("spades@3.15.4:", when="@2.1:")
 
     def setup_run_environment(self, env):
         env.set("HYBPIPER_HOME", self.prefix)
 
+    @when("@:1.3.1")
     def install(self, spec, prefix):
         mkdirp(prefix.bin)
         install("*.py", prefix.bin)