diff options
| author | Todd Gamblin <tgamblin@llnl.gov> | 2016-08-10 01:50:00 -0700 |
|---|---|---|
| committer | Todd Gamblin <tgamblin@llnl.gov> | 2016-08-10 16:33:39 -0700 |
| commit | 240f1fd2239552f37d0f8a8841496414b163ef10 (patch) | |
| tree | 9bf142e5208ec715ae1ba0a556799276a77b27a6 | |
| parent | 867121ca68e436e95fe338b4ca80ab154dd6388a (diff) | |
| download | spack-240f1fd2239552f37d0f8a8841496414b163ef10.tar.gz spack-240f1fd2239552f37d0f8a8841496414b163ef10.tar.bz2 spack-240f1fd2239552f37d0f8a8841496414b163ef10.tar.xz spack-240f1fd2239552f37d0f8a8841496414b163ef10.zip | |
Spack packages now PEP8 compliant.
381 files changed, 2484 insertions, 1644 deletions
diff --git a/var/spack/repos/builtin.mock/packages/a/package.py b/var/spack/repos/builtin.mock/packages/a/package.py index 40b92240fc..0d75ee1256 100644 --- a/var/spack/repos/builtin.mock/packages/a/package.py +++ b/var/spack/repos/builtin.mock/packages/a/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class A(Package): """Simple package with no dependencies""" diff --git a/var/spack/repos/builtin.mock/packages/b/package.py b/var/spack/repos/builtin.mock/packages/b/package.py index c447a56b48..5729f24e79 100644 --- a/var/spack/repos/builtin.mock/packages/b/package.py +++ b/var/spack/repos/builtin.mock/packages/b/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class B(Package): """Simple package with no dependencies""" diff --git a/var/spack/repos/builtin.mock/packages/c/package.py b/var/spack/repos/builtin.mock/packages/c/package.py index 5b6079c4e3..80777a05bb 100644 --- a/var/spack/repos/builtin.mock/packages/c/package.py +++ b/var/spack/repos/builtin.mock/packages/c/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class C(Package): """Simple package with no dependencies""" diff --git a/var/spack/repos/builtin.mock/packages/callpath/package.py b/var/spack/repos/builtin.mock/packages/callpath/package.py index c297a123b8..56b969df98 100644 --- a/var/spack/repos/builtin.mock/packages/callpath/package.py +++ b/var/spack/repos/builtin.mock/packages/callpath/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Callpath(Package): homepage = "https://github.com/tgamblin/callpath" url = "http://github.com/tgamblin/callpath-1.0.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/cmake-client/package.py b/var/spack/repos/builtin.mock/packages/cmake-client/package.py index c58430317a..0c78f0bf68 100644 --- a/var/spack/repos/builtin.mock/packages/cmake-client/package.py +++ b/var/spack/repos/builtin.mock/packages/cmake-client/package.py @@ -25,6 +25,7 @@ from spack import * import os + def check(condition, msg): """Raise an install error if condition is False.""" if not condition: @@ -40,15 +41,14 @@ class CmakeClient(Package): depends_on('cmake', type='build') - def setup_environment(self, spack_env, run_env): spack_cc # Ensure spack module-scope variable is avaiabl check(from_cmake == "from_cmake", "setup_environment couldn't read global set by cmake.") check(self.spec['cmake'].link_arg == "test link arg", - "link arg on dependency spec not readable from setup_environment.") - + "link arg on dependency spec not readable from " + "setup_environment.") def setup_dependent_environment(self, spack_env, run_env, dspec): spack_cc # Ensure spack module-scope variable is avaiable @@ -56,8 +56,8 @@ class CmakeClient(Package): "setup_dependent_environment couldn't read global set by cmake.") check(self.spec['cmake'].link_arg == "test link arg", - "link arg on dependency spec not readable from setup_dependent_environment.") - + "link arg on dependency spec not readable from " + "setup_dependent_environment.") def setup_dependent_package(self, module, dspec): spack_cc # Ensure spack module-scope variable is avaiable @@ -65,9 +65,8 @@ class CmakeClient(Package): "setup_dependent_package couldn't read global set by cmake.") check(self.spec['cmake'].link_arg == "test link arg", - "link arg on dependency spec not readable from setup_dependent_package.") - - + "link arg on dependency spec not readable from " + "setup_dependent_package.") def install(self, spec, prefix): # check that cmake is in the global scope. diff --git a/var/spack/repos/builtin.mock/packages/cmake/package.py b/var/spack/repos/builtin.mock/packages/cmake/package.py index 0356cf8afb..c8b6464e69 100644 --- a/var/spack/repos/builtin.mock/packages/cmake/package.py +++ b/var/spack/repos/builtin.mock/packages/cmake/package.py @@ -25,6 +25,7 @@ from spack import * import os + def check(condition, msg): """Raise an install error if condition is False.""" if not condition: @@ -39,7 +40,6 @@ class Cmake(Package): version('3.4.3', '4cb3ff35b2472aae70f542116d616e63', url='https://cmake.org/files/v3.4/cmake-3.4.3.tar.gz') - def setup_environment(self, spack_env, run_env): spack_cc # Ensure spack module-scope variable is avaiable spack_env.set('for_install', 'for_install') @@ -48,7 +48,6 @@ class Cmake(Package): spack_cc # Ensure spack module-scope variable is avaiable spack_env.set('from_cmake', 'from_cmake') - def setup_dependent_package(self, module, dspec): spack_cc # Ensure spack module-scope variable is avaiable @@ -57,7 +56,6 @@ class Cmake(Package): self.spec.link_arg = "test link arg" - def install(self, spec, prefix): mkdirp(prefix.bin) diff --git a/var/spack/repos/builtin.mock/packages/direct_mpich/package.py b/var/spack/repos/builtin.mock/packages/direct_mpich/package.py index 663908d56c..f38589ad4d 100644 --- a/var/spack/repos/builtin.mock/packages/direct_mpich/package.py +++ b/var/spack/repos/builtin.mock/packages/direct_mpich/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class DirectMpich(Package): homepage = "http://www.example.com" url = "http://www.example.com/direct_mpich-1.0.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/dyninst/package.py b/var/spack/repos/builtin.mock/packages/dyninst/package.py index ad486011e2..daf1b82ec6 100644 --- a/var/spack/repos/builtin.mock/packages/dyninst/package.py +++ b/var/spack/repos/builtin.mock/packages/dyninst/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Dyninst(Package): homepage = "https://paradyn.org" url = "http://www.paradyn.org/release8.1/DyninstAPI-8.1.1.tgz" diff --git a/var/spack/repos/builtin.mock/packages/e/package.py b/var/spack/repos/builtin.mock/packages/e/package.py index b951a3eaa6..c764007563 100644 --- a/var/spack/repos/builtin.mock/packages/e/package.py +++ b/var/spack/repos/builtin.mock/packages/e/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class E(Package): """Simple package with no dependencies""" diff --git a/var/spack/repos/builtin.mock/packages/externalmodule/package.py b/var/spack/repos/builtin.mock/packages/externalmodule/package.py index f7b0da3fd9..f7c9b056a4 100644 --- a/var/spack/repos/builtin.mock/packages/externalmodule/package.py +++ b/var/spack/repos/builtin.mock/packages/externalmodule/package.py @@ -25,6 +25,7 @@ ############################################################################## from spack import * + class Externalmodule(Package): homepage = "http://somewhere.com" url = "http://somewhere.com/module-1.0.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/externalprereq/package.py b/var/spack/repos/builtin.mock/packages/externalprereq/package.py index bd3c4348bf..226742f2cb 100644 --- a/var/spack/repos/builtin.mock/packages/externalprereq/package.py +++ b/var/spack/repos/builtin.mock/packages/externalprereq/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Externalprereq(Package): homepage = "http://somewhere.com" url = "http://somewhere.com/prereq-1.0.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/externaltest/package.py b/var/spack/repos/builtin.mock/packages/externaltest/package.py index 2318887aec..252c42556e 100644 --- a/var/spack/repos/builtin.mock/packages/externaltest/package.py +++ b/var/spack/repos/builtin.mock/packages/externaltest/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Externaltest(Package): homepage = "http://somewhere.com" url = "http://somewhere.com/test-1.0.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/externaltool/package.py b/var/spack/repos/builtin.mock/packages/externaltool/package.py index 9ff2396f36..d2daddd350 100644 --- a/var/spack/repos/builtin.mock/packages/externaltool/package.py +++ b/var/spack/repos/builtin.mock/packages/externaltool/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Externaltool(Package): homepage = "http://somewhere.com" url = "http://somewhere.com/tool-1.0.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/externalvirtual/package.py b/var/spack/repos/builtin.mock/packages/externalvirtual/package.py index e19ef332f0..1f3553014b 100644 --- a/var/spack/repos/builtin.mock/packages/externalvirtual/package.py +++ b/var/spack/repos/builtin.mock/packages/externalvirtual/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Externalvirtual(Package): homepage = "http://somewhere.com" url = "http://somewhere.com/stuff-1.0.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/fake/package.py b/var/spack/repos/builtin.mock/packages/fake/package.py index 15aabf1101..b83eec7470 100644 --- a/var/spack/repos/builtin.mock/packages/fake/package.py +++ b/var/spack/repos/builtin.mock/packages/fake/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Fake(Package): homepage = "http://www.fake-spack-example.org" url = "http://www.fake-spack-example.org/downloads/fake-1.0.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/git-test/package.py b/var/spack/repos/builtin.mock/packages/git-test/package.py index aeea41146f..730e71ac6b 100644 --- a/var/spack/repos/builtin.mock/packages/git-test/package.py +++ b/var/spack/repos/builtin.mock/packages/git-test/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class GitTest(Package): """Mock package that uses git for fetching.""" homepage = "http://www.git-fetch-example.com" diff --git a/var/spack/repos/builtin.mock/packages/hg-test/package.py b/var/spack/repos/builtin.mock/packages/hg-test/package.py index 64719eb53c..70a9b7f2c7 100644 --- a/var/spack/repos/builtin.mock/packages/hg-test/package.py +++ b/var/spack/repos/builtin.mock/packages/hg-test/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class HgTest(Package): """Test package that does fetching with mercurial.""" homepage = "http://www.hg-fetch-example.com" diff --git a/var/spack/repos/builtin.mock/packages/hypre/package.py b/var/spack/repos/builtin.mock/packages/hypre/package.py index 3aedea9bf2..b9e31b09dc 100644 --- a/var/spack/repos/builtin.mock/packages/hypre/package.py +++ b/var/spack/repos/builtin.mock/packages/hypre/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Hypre(Package): """Hypre is included here as an example of a package that depends on both LAPACK and BLAS.""" diff --git a/var/spack/repos/builtin.mock/packages/indirect_mpich/package.py b/var/spack/repos/builtin.mock/packages/indirect_mpich/package.py index 6ed779889b..bbbf196129 100644 --- a/var/spack/repos/builtin.mock/packages/indirect_mpich/package.py +++ b/var/spack/repos/builtin.mock/packages/indirect_mpich/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class IndirectMpich(Package): """Test case for a package that depends on MPI and one of its dependencies requires a *particular version* of MPI. diff --git a/var/spack/repos/builtin.mock/packages/libdwarf/package.py b/var/spack/repos/builtin.mock/packages/libdwarf/package.py index b53e295e23..0fcbe4a62e 100644 --- a/var/spack/repos/builtin.mock/packages/libdwarf/package.py +++ b/var/spack/repos/builtin.mock/packages/libdwarf/package.py @@ -23,11 +23,11 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os # Only build certain parts of dwarf because the other ones break. dwarf_dirs = ['libdwarf', 'dwarfdump2'] + class Libdwarf(Package): homepage = "http://www.prevanders.net/dwarf.html" url = "http://www.prevanders.net/libdwarf-20130729.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/libelf/package.py b/var/spack/repos/builtin.mock/packages/libelf/package.py index f52d8cefe1..90d00ad339 100644 --- a/var/spack/repos/builtin.mock/packages/libelf/package.py +++ b/var/spack/repos/builtin.mock/packages/libelf/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libelf(Package): homepage = "http://www.mr511.de/software/english.html" url = "http://www.mr511.de/software/libelf-0.8.13.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/mpich/package.py b/var/spack/repos/builtin.mock/packages/mpich/package.py index f278f26b8b..936127398c 100644 --- a/var/spack/repos/builtin.mock/packages/mpich/package.py +++ b/var/spack/repos/builtin.mock/packages/mpich/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Mpich(Package): homepage = "http://www.mpich.org" url = "http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/mpich2/package.py b/var/spack/repos/builtin.mock/packages/mpich2/package.py index e6b68d2490..c92b4ba43a 100644 --- a/var/spack/repos/builtin.mock/packages/mpich2/package.py +++ b/var/spack/repos/builtin.mock/packages/mpich2/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Mpich2(Package): homepage = "http://www.mpich.org" url = "http://www.mpich.org/static/downloads/1.5/mpich2-1.5.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/multimethod/package.py b/var/spack/repos/builtin.mock/packages/multimethod/package.py index ca991632dd..fa3f815135 100644 --- a/var/spack/repos/builtin.mock/packages/multimethod/package.py +++ b/var/spack/repos/builtin.mock/packages/multimethod/package.py @@ -22,12 +22,10 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -import imp -from llnl.util.filesystem import join_path -from spack.util.naming import mod_to_class from spack import * import spack.architecture + class Multimethod(Package): """This package is designed for use with Spack's multimethod test. It has a bunch of test cases for the @when decorator that the @@ -52,7 +50,6 @@ class Multimethod(Package): def no_version_2(self): return 4 - # # These functions overlap, so there is ambiguity, but we'll take # the first one. @@ -65,7 +62,6 @@ class Multimethod(Package): def version_overlap(self): return 2 - # # More complicated case with cascading versions. # @@ -84,7 +80,6 @@ class Multimethod(Package): def mpi_version(self): return 1 - # # Use these to test whether the default method is called when no # match is found. This also tests whether we can switch methods @@ -101,8 +96,6 @@ class Multimethod(Package): def has_a_default(self): return 'intel' - - # # Make sure we can switch methods on different target # @@ -112,15 +105,16 @@ class Multimethod(Package): targets = targets[:-1] for target in targets: - @when('target='+target.name) + @when('target=' + target.name) def different_by_target(self): - if isinstance(self.spec.architecture.target,basestring): + if isinstance(self.spec.architecture.target, basestring): return self.spec.architecture.target else: return self.spec.architecture.target.name # # Make sure we can switch methods on different dependencies # + @when('^mpich') def different_by_dep(self): return 'mpich' @@ -129,7 +123,6 @@ class Multimethod(Package): def different_by_dep(self): return 'zmpi' - # # Make sure we can switch on virtual dependencies # diff --git a/var/spack/repos/builtin.mock/packages/netlib-blas/package.py b/var/spack/repos/builtin.mock/packages/netlib-blas/package.py index 9d567f2e9b..0a5b1d0e6a 100644 --- a/var/spack/repos/builtin.mock/packages/netlib-blas/package.py +++ b/var/spack/repos/builtin.mock/packages/netlib-blas/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class NetlibBlas(Package): homepage = "http://www.netlib.org/lapack/" url = "http://www.netlib.org/lapack/lapack-3.5.0.tgz" diff --git a/var/spack/repos/builtin.mock/packages/netlib-lapack/package.py b/var/spack/repos/builtin.mock/packages/netlib-lapack/package.py index 46d6ae43dc..755d3001a4 100644 --- a/var/spack/repos/builtin.mock/packages/netlib-lapack/package.py +++ b/var/spack/repos/builtin.mock/packages/netlib-lapack/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class NetlibLapack(Package): homepage = "http://www.netlib.org/lapack/" url = "http://www.netlib.org/lapack/lapack-3.5.0.tgz" diff --git a/var/spack/repos/builtin.mock/packages/openblas-with-lapack/package.py b/var/spack/repos/builtin.mock/packages/openblas-with-lapack/package.py index b36237c1e2..0f14fbaa61 100644 --- a/var/spack/repos/builtin.mock/packages/openblas-with-lapack/package.py +++ b/var/spack/repos/builtin.mock/packages/openblas-with-lapack/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class OpenblasWithLapack(Package): """Dummy version of OpenBLAS that also provides LAPACK, for testing.""" homepage = "http://www.openblas.net" diff --git a/var/spack/repos/builtin.mock/packages/openblas/package.py b/var/spack/repos/builtin.mock/packages/openblas/package.py index 5b39447e83..f6cdeeea49 100644 --- a/var/spack/repos/builtin.mock/packages/openblas/package.py +++ b/var/spack/repos/builtin.mock/packages/openblas/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Openblas(Package): """OpenBLAS: An optimized BLAS library""" homepage = "http://www.openblas.net" diff --git a/var/spack/repos/builtin.mock/packages/optional-dep-test-2/package.py b/var/spack/repos/builtin.mock/packages/optional-dep-test-2/package.py index f97959c763..337f54e24e 100644 --- a/var/spack/repos/builtin.mock/packages/optional-dep-test-2/package.py +++ b/var/spack/repos/builtin.mock/packages/optional-dep-test-2/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class OptionalDepTest2(Package): """Depends on the optional-dep-test package""" diff --git a/var/spack/repos/builtin.mock/packages/optional-dep-test-3/package.py b/var/spack/repos/builtin.mock/packages/optional-dep-test-3/package.py index d8fe33c3da..2904b3782d 100644 --- a/var/spack/repos/builtin.mock/packages/optional-dep-test-3/package.py +++ b/var/spack/repos/builtin.mock/packages/optional-dep-test-3/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class OptionalDepTest3(Package): """Depends on the optional-dep-test package""" diff --git a/var/spack/repos/builtin.mock/packages/optional-dep-test/package.py b/var/spack/repos/builtin.mock/packages/optional-dep-test/package.py index 80c1da55f8..2c07e61769 100644 --- a/var/spack/repos/builtin.mock/packages/optional-dep-test/package.py +++ b/var/spack/repos/builtin.mock/packages/optional-dep-test/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class OptionalDepTest(Package): """Description""" diff --git a/var/spack/repos/builtin.mock/packages/python/package.py b/var/spack/repos/builtin.mock/packages/python/package.py index dc21b475e5..a5290161ad 100644 --- a/var/spack/repos/builtin.mock/packages/python/package.py +++ b/var/spack/repos/builtin.mock/packages/python/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Python(Package): """Dummy Python package to demonstrate preferred versions.""" homepage = "http://www.python.org" @@ -40,4 +41,3 @@ class Python(Package): def install(self, spec, prefix): pass - diff --git a/var/spack/repos/builtin.mock/packages/svn-test/package.py b/var/spack/repos/builtin.mock/packages/svn-test/package.py index 2f197593e0..01d0929c28 100644 --- a/var/spack/repos/builtin.mock/packages/svn-test/package.py +++ b/var/spack/repos/builtin.mock/packages/svn-test/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class SvnTest(Package): """Mock package that uses svn for fetching.""" url = "http://www.example.com/svn-test-1.0.tar.gz" diff --git a/var/spack/repos/builtin.mock/packages/trivial_install_test_package/package.py b/var/spack/repos/builtin.mock/packages/trivial_install_test_package/package.py index 7c65909ad2..2129d9788b 100644 --- a/var/spack/repos/builtin.mock/packages/trivial_install_test_package/package.py +++ b/var/spack/repos/builtin.mock/packages/trivial_install_test_package/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class TrivialInstallTestPackage(Package): """This package is a stub with a trivial install method. It allows us to test the install and uninstall logic of spack.""" diff --git a/var/spack/repos/builtin.mock/packages/zmpi/package.py b/var/spack/repos/builtin.mock/packages/zmpi/package.py index fcd3afe93b..b6a5b33011 100644 --- a/var/spack/repos/builtin.mock/packages/zmpi/package.py +++ b/var/spack/repos/builtin.mock/packages/zmpi/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Zmpi(Package): """This is a fake MPI package used to demonstrate virtual package providers with dependencies.""" diff --git a/var/spack/repos/builtin/packages/LuaJIT/package.py b/var/spack/repos/builtin/packages/LuaJIT/package.py index db6f7d3cad..244c63c8fb 100644 --- a/var/spack/repos/builtin/packages/LuaJIT/package.py +++ b/var/spack/repos/builtin/packages/LuaJIT/package.py @@ -25,6 +25,7 @@ import os from spack import * + class Luajit(Package): """Flast flexible JITed lua""" homepage = "http://www.luajit.org" diff --git a/var/spack/repos/builtin/packages/SAMRAI/package.py b/var/spack/repos/builtin/packages/SAMRAI/package.py index 73c51ced23..e0648290d6 100644 --- a/var/spack/repos/builtin/packages/SAMRAI/package.py +++ b/var/spack/repos/builtin/packages/SAMRAI/package.py @@ -24,12 +24,14 @@ ############################################################################## from spack import * + class Samrai(Package): """SAMRAI (Structured Adaptive Mesh Refinement Application Infrastructure) - is an object-oriented C++ software library enables exploration of numerical, - algorithmic, parallel computing, and software issues associated with applying - structured adaptive mesh refinement (SAMR) technology in large-scale parallel - application development. + is an object-oriented C++ software library enables exploration of + numerical, algorithmic, parallel computing, and software issues + associated with applying structured adaptive mesh refinement + (SAMR) technology in large-scale parallel application development. + """ homepage = "https://computation.llnl.gov/project/SAMRAI/" url = "https://computation.llnl.gov/project/SAMRAI/download/SAMRAI-v3.9.1.tar.gz" diff --git a/var/spack/repos/builtin/packages/activeharmony/package.py b/var/spack/repos/builtin/packages/activeharmony/package.py index 9d15bd71d9..6a4e67a1ca 100644 --- a/var/spack/repos/builtin/packages/activeharmony/package.py +++ b/var/spack/repos/builtin/packages/activeharmony/package.py @@ -24,8 +24,10 @@ ############################################################################## from spack import * + class Activeharmony(Package): - """Active Harmony: a framework for auto-tuning (the automated search for values to improve the performance of a target application).""" + """Active Harmony: a framework for auto-tuning (the automated search for + values to improve the performance of a target application).""" homepage = "http://www.dyninst.org/harmony" url = "http://www.dyninst.org/sites/default/files/downloads/harmony/ah-4.5.tar.gz" @@ -34,6 +36,3 @@ class Activeharmony(Package): def install(self, spec, prefix): make("CFLAGS=-O3") make("install", 'PREFIX=%s' % prefix) - -from spack import * - diff --git a/var/spack/repos/builtin/packages/adept-utils/package.py b/var/spack/repos/builtin/packages/adept-utils/package.py index 592681bb82..1a6998fd96 100644 --- a/var/spack/repos/builtin/packages/adept-utils/package.py +++ b/var/spack/repos/builtin/packages/adept-utils/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class AdeptUtils(Package): """Utility libraries for LLNL performance tools.""" diff --git a/var/spack/repos/builtin/packages/adol-c/package.py b/var/spack/repos/builtin/packages/adol-c/package.py index a6052ad7bd..c5d53de230 100644 --- a/var/spack/repos/builtin/packages/adol-c/package.py +++ b/var/spack/repos/builtin/packages/adol-c/package.py @@ -23,21 +23,24 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import sys + class AdolC(Package): - """A package for the automatic differentiation of first and higher derivatives of vector functions in C and C++ programs by operator overloading.""" + """A package for the automatic differentiation of first and higher + derivatives of vector functions in C and C++ programs by operator + overloading.""" homepage = "https://projects.coin-or.org/ADOL-C" url = "http://www.coin-or.org/download/source/ADOL-C/ADOL-C-2.6.1.tgz" version('head', svn='https://projects.coin-or.org/svn/ADOL-C/trunk/') version('2.6.1', '1032b28427d6e399af4610e78c0f087b') - + variant('doc', default=True, description='Install documentation') variant('openmp', default=False, description='Enable OpenMP support') variant('sparse', default=False, description='Enable sparse drivers') - variant('tests', default=True, description='Build all included examples as a test case') - + variant('tests', default=True, + description='Build all included examples as a test case') + patch('openmp_exam.patch') def install(self, spec, prefix): @@ -49,10 +52,14 @@ class AdolC(Package): if '+openmp' in spec: if spec.satisfies('%gcc'): make_args.extend([ - '--with-openmp-flag=-fopenmp' # FIXME: Is this required? -I <path to omp.h> -L <LLVM OpenMP library path> + # FIXME: Is this required? -I <path to omp.h> -L <LLVM + # OpenMP library path> + '--with-openmp-flag=-fopenmp' ]) else: - raise InstallError("OpenMP flags for compilers other than GCC are not implemented.") + raise InstallError( + "OpenMP flags for compilers other than GCC " + "are not implemented.") if '+sparse' in spec: make_args.extend([ @@ -63,7 +70,7 @@ class AdolC(Package): # whether Adol-C works as expected if '+tests' in spec: make_args.extend([ - '--enable-docexa', # Documeted examples + '--enable-docexa', # Documeted examples '--enable-addexa' # Additional examples ]) if '+openmp' in spec: @@ -74,31 +81,36 @@ class AdolC(Package): configure(*make_args) make() make("install") - + # Copy the config.h file, as some packages might require it source_directory = self.stage.source_path - config_h = join_path(source_directory,'ADOL-C','src','config.h') - install(config_h, join_path(prefix.include,'adolc')) - + config_h = join_path(source_directory, 'ADOL-C', 'src', 'config.h') + install(config_h, join_path(prefix.include, 'adolc')) + # Install documentation to {prefix}/share if '+doc' in spec: - install_tree(join_path('ADOL-C','doc'), - join_path(prefix.share,'doc')) - + install_tree(join_path('ADOL-C', 'doc'), + join_path(prefix.share, 'doc')) + # Install examples to {prefix}/share if '+tests' in spec: - install_tree(join_path('ADOL-C','examples'), - join_path(prefix.share,'examples')) - + install_tree(join_path('ADOL-C', 'examples'), + join_path(prefix.share, 'examples')) + # Run some examples that don't require user input # TODO: Check that bundled examples produce the correct results - with working_dir(join_path(source_directory,'ADOL-C','examples')): + with working_dir(join_path( + source_directory, 'ADOL-C', 'examples')): Executable('./tapeless_scalar')() Executable('./tapeless_vector')() - - with working_dir(join_path(source_directory,'ADOL-C','examples','additional_examples')): + + with working_dir(join_path( + source_directory, + 'ADOL-C', 'examples', 'additional_examples')): Executable('./checkpointing/checkpointing')() - + if '+openmp' in spec: - with working_dir(join_path(source_directory,'ADOL-C','examples','additional_examples')): + with working_dir(join_path( + source_directory, + 'ADOL-C', 'examples', 'additional_examples')): Executable('./checkpointing/checkpointing')() diff --git a/var/spack/repos/builtin/packages/antlr/package.py b/var/spack/repos/builtin/packages/antlr/package.py index eb67facaf3..891061c62f 100644 --- a/var/spack/repos/builtin/packages/antlr/package.py +++ b/var/spack/repos/builtin/packages/antlr/package.py @@ -24,8 +24,9 @@ ############################################################################## from spack import * + class Antlr(Package): - + homepage = "http://www.antlr.org" url = "https://github.com/antlr/antlr/tarball/v2.7.7" @@ -41,22 +42,23 @@ class Antlr(Package): # CharScanner.hpp must include this line: #include <cstring> or else # ncap2 will not compile (this tarball is already patched). version('2.7.7', '914865e853fe8e1e61a9f23d045cb4ab', - # Patched version as described above - url='http://dust.ess.uci.edu/tmp/antlr-2.7.7.tar.gz') - # Unpatched version - # url='http://dust.ess.uci.edu/nco/antlr-2.7.7.tar.gz') + # Patched version as described above + url='http://dust.ess.uci.edu/tmp/antlr-2.7.7.tar.gz') + # Unpatched version + # url='http://dust.ess.uci.edu/nco/antlr-2.7.7.tar.gz') variant('cxx', default=False, description='Enable ANTLR for C++') variant('java', default=False, description='Enable ANTLR for Java') variant('python', default=False, description='Enable ANTLR for Python') variant('csharp', default=False, description='Enable ANTLR for Csharp') - def install(self, spec, prefix): # Check for future enabling of variants for v in ('+java', '+python', '+csharp'): if v in spec: - raise Error('Illegal variant %s; for now, Spack only knows how to build antlr or antlr+cxx') + raise Error( + ('Illegal variant %s; ' % v) + 'for now, ' + 'Spack only knows how to build antlr or antlr+cxx') config_args = [ '--prefix=%s' % prefix, diff --git a/var/spack/repos/builtin/packages/apex/package.py b/var/spack/repos/builtin/packages/apex/package.py index 59fbe50c93..832e10a1ec 100644 --- a/var/spack/repos/builtin/packages/apex/package.py +++ b/var/spack/repos/builtin/packages/apex/package.py @@ -25,6 +25,7 @@ from spack import * from spack.util.environment import * + class Apex(Package): homepage = "http://github.com/khuck/xpress-apex" url = "http://github.com/khuck/xpress-apex/archive/v0.1.tar.gz" @@ -39,17 +40,17 @@ class Apex(Package): def install(self, spec, prefix): - path=get_path("PATH") + path = get_path("PATH") path.remove(spec["binutils"].prefix.bin) path_set("PATH", path) with working_dir("build", create=True): cmake('-DBOOST_ROOT=%s' % spec['boost'].prefix, - '-DUSE_BFD=TRUE', - '-DBFD_ROOT=%s' % spec['binutils'].prefix, - '-DUSE_ACTIVEHARMONY=TRUE', - '-DACTIVEHARMONY_ROOT=%s' % spec['activeharmony'].prefix, - '-DUSE_OMPT=TRUE', - '-DOMPT_ROOT=%s' % spec['ompt-openmp'].prefix, - '..', *std_cmake_args) + '-DUSE_BFD=TRUE', + '-DBFD_ROOT=%s' % spec['binutils'].prefix, + '-DUSE_ACTIVEHARMONY=TRUE', + '-DACTIVEHARMONY_ROOT=%s' % spec['activeharmony'].prefix, + '-DUSE_OMPT=TRUE', + '-DOMPT_ROOT=%s' % spec['ompt-openmp'].prefix, + '..', *std_cmake_args) make() make("install") diff --git a/var/spack/repos/builtin/packages/apr-util/package.py b/var/spack/repos/builtin/packages/apr-util/package.py index 05dc670aed..8e01d3bbdd 100644 --- a/var/spack/repos/builtin/packages/apr-util/package.py +++ b/var/spack/repos/builtin/packages/apr-util/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class AprUtil(Package): """Apache Portable Runtime Utility""" homepage = 'https://apr.apache.org/' diff --git a/var/spack/repos/builtin/packages/apr/package.py b/var/spack/repos/builtin/packages/apr/package.py index 398e1c323d..0cd51f52e3 100644 --- a/var/spack/repos/builtin/packages/apr/package.py +++ b/var/spack/repos/builtin/packages/apr/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Apr(Package): """Apache portable runtime.""" homepage = 'https://apr.apache.org/' diff --git a/var/spack/repos/builtin/packages/arpack-ng/package.py b/var/spack/repos/builtin/packages/arpack-ng/package.py index 2874930cdd..728c2345f2 100644 --- a/var/spack/repos/builtin/packages/arpack-ng/package.py +++ b/var/spack/repos/builtin/packages/arpack-ng/package.py @@ -59,7 +59,8 @@ class ArpackNg(Package): version('3.4.0', 'ae9ca13f2143a7ea280cb0e2fd4bfae4') version('3.3.0', 'ed3648a23f0a868a43ef44c97a21bad5') - variant('shared', default=True, description='Enables the build of shared libraries') + variant('shared', default=True, + description='Enables the build of shared libraries') variant('mpi', default=False, description='Activates MPI support') # The function pdlamch10 does not set the return variable. diff --git a/var/spack/repos/builtin/packages/asciidoc/package.py b/var/spack/repos/builtin/packages/asciidoc/package.py index a846e0ba65..be8db684f5 100644 --- a/var/spack/repos/builtin/packages/asciidoc/package.py +++ b/var/spack/repos/builtin/packages/asciidoc/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Asciidoc(Package): """ A presentable text document format for writing articles, UNIX man pages and other small to medium sized documents.""" diff --git a/var/spack/repos/builtin/packages/atop/package.py b/var/spack/repos/builtin/packages/atop/package.py index 9cacafc634..e3a9d464a9 100644 --- a/var/spack/repos/builtin/packages/atop/package.py +++ b/var/spack/repos/builtin/packages/atop/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Atop(Package): """Atop is an ASCII full-screen performance monitor for Linux""" homepage = "http://www.atoptool.nl/index.php" @@ -37,4 +38,4 @@ class Atop(Package): install("atop", join_path(prefix.bin, "atop")) mkdirp(join_path(prefix.man, "man1")) install(join_path("man", "atop.1"), - join_path(prefix.man, "man1", "atop.1")) + join_path(prefix.man, "man1", "atop.1")) diff --git a/var/spack/repos/builtin/packages/automaded/package.py b/var/spack/repos/builtin/packages/automaded/package.py index 2b4681778f..7e586b2991 100644 --- a/var/spack/repos/builtin/packages/automaded/package.py +++ b/var/spack/repos/builtin/packages/automaded/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Automaded(Package): """AutomaDeD (Automata-based Debugging for Dissimilar parallel tasks) is a tool for automatic diagnosis of performance and diff --git a/var/spack/repos/builtin/packages/bash/package.py b/var/spack/repos/builtin/packages/bash/package.py index 5820595be9..e0cd114635 100644 --- a/var/spack/repos/builtin/packages/bash/package.py +++ b/var/spack/repos/builtin/packages/bash/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Bash(Package): """The GNU Project's Bourne Again SHell.""" diff --git a/var/spack/repos/builtin/packages/bbcp/package.py b/var/spack/repos/builtin/packages/bbcp/package.py index 09e897f34e..f69ed395a3 100644 --- a/var/spack/repos/builtin/packages/bbcp/package.py +++ b/var/spack/repos/builtin/packages/bbcp/package.py @@ -24,18 +24,22 @@ ############################################################################## from spack import * + class Bbcp(Package): """Securely and quickly copy data from source to target""" homepage = "http://www.slac.stanford.edu/~abh/bbcp/" - version('git', git='http://www.slac.stanford.edu/~abh/bbcp/bbcp.git', branch="master") + version('git', git='http://www.slac.stanford.edu/~abh/bbcp/bbcp.git', + branch="master") def install(self, spec, prefix): cd("src") make() - # BBCP wants to build the executable in a directory whose name depends on the system type + # BBCP wants to build the executable in a directory whose name depends + # on the system type makesname = Executable("../MakeSname") - bbcp_executable_path = "../bin/%s/bbcp" % makesname(output=str).rstrip("\n") + bbcp_executable_path = "../bin/%s/bbcp" % makesname( + output=str).rstrip("\n") destination_path = "%s/bin/" % prefix mkdirp(destination_path) install(bbcp_executable_path, destination_path) diff --git a/var/spack/repos/builtin/packages/bdw-gc/package.py b/var/spack/repos/builtin/packages/bdw-gc/package.py index 2c61c21b43..5120266319 100644 --- a/var/spack/repos/builtin/packages/bdw-gc/package.py +++ b/var/spack/repos/builtin/packages/bdw-gc/package.py @@ -34,7 +34,8 @@ class BdwGc(Package): version('7.4.4', '96d18b0448a841c88d56e4ab3d180297') - variant('libatomic-ops', default=True, description='Use external libatomic-ops') + variant('libatomic-ops', default=True, + description='Use external libatomic-ops') depends_on('libatomic-ops', when='+libatomic-ops') diff --git a/var/spack/repos/builtin/packages/bear/package.py b/var/spack/repos/builtin/packages/bear/package.py index a137fded08..f52050d7b9 100644 --- a/var/spack/repos/builtin/packages/bear/package.py +++ b/var/spack/repos/builtin/packages/bear/package.py @@ -24,8 +24,10 @@ ############################################################################## from spack import * + class Bear(Package): - """Bear is a tool that generates a compilation database for clang tooling from non-cmake build systems.""" + """Bear is a tool that generates a compilation database for clang tooling + from non-cmake build systems.""" homepage = "https://github.com/rizsotto/Bear" url = "https://github.com/rizsotto/Bear/archive/2.0.4.tar.gz" diff --git a/var/spack/repos/builtin/packages/bib2xhtml/package.py b/var/spack/repos/builtin/packages/bib2xhtml/package.py index a9cbd204b6..b356038180 100644 --- a/var/spack/repos/builtin/packages/bib2xhtml/package.py +++ b/var/spack/repos/builtin/packages/bib2xhtml/package.py @@ -25,10 +25,11 @@ from spack import * from glob import glob + class Bib2xhtml(Package): """bib2xhtml is a program that converts BibTeX files into HTML.""" homepage = "http://www.spinellis.gr/sw/textproc/bib2xhtml/" - url='http://www.spinellis.gr/sw/textproc/bib2xhtml/bib2xhtml-v3.0-15-gf506.tar.gz' + url = 'http://www.spinellis.gr/sw/textproc/bib2xhtml/bib2xhtml-v3.0-15-gf506.tar.gz' version('3.0-15-gf506', 'a26ba02fe0053bbbf2277bdf0acf8645') diff --git a/var/spack/repos/builtin/packages/bison/package.py b/var/spack/repos/builtin/packages/bison/package.py index c7a125df15..70795f05cc 100644 --- a/var/spack/repos/builtin/packages/bison/package.py +++ b/var/spack/repos/builtin/packages/bison/package.py @@ -24,9 +24,10 @@ ############################################################################## from spack import * + class Bison(Package): - """Bison is a general-purpose parser generator that converts - an annotated context-free grammar into a deterministic LR or + """Bison is a general-purpose parser generator that converts + an annotated context-free grammar into a deterministic LR or generalized LR (GLR) parser employing LALR(1) parser tables.""" homepage = "http://www.gnu.org/software/bison/" diff --git a/var/spack/repos/builtin/packages/blitz/package.py b/var/spack/repos/builtin/packages/blitz/package.py index acc6ddcd07..c92e49a732 100644 --- a/var/spack/repos/builtin/packages/blitz/package.py +++ b/var/spack/repos/builtin/packages/blitz/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Blitz(Package): """N-dimensional arrays for C++""" homepage = "http://github.com/blitzpp/blitz" diff --git a/var/spack/repos/builtin/packages/boost/package.py b/var/spack/repos/builtin/packages/boost/package.py index 67294fb9a1..690a05a150 100644 --- a/var/spack/repos/builtin/packages/boost/package.py +++ b/var/spack/repos/builtin/packages/boost/package.py @@ -102,13 +102,18 @@ class Boost(Package): for lib in all_libs: variant(lib, default=(lib not in default_noinstall_libs), - description="Compile with {0} library".format(lib)) - - variant('debug', default=False, description='Switch to the debug version of Boost') - variant('shared', default=True, description="Additionally build shared libraries") - variant('multithreaded', default=True, description="Build multi-threaded versions of libraries") - variant('singlethreaded', default=True, description="Build single-threaded versions of libraries") - variant('icu_support', default=False, description="Include ICU support (for regex/locale libraries)") + description="Compile with {0} library".format(lib)) + + variant('debug', default=False, + description='Switch to the debug version of Boost') + variant('shared', default=True, + description="Additionally build shared libraries") + variant('multithreaded', default=True, + description="Build multi-threaded versions of libraries") + variant('singlethreaded', default=True, + description="Build single-threaded versions of libraries") + variant('icu_support', default=False, + description="Include ICU support (for regex/locale libraries)") variant('graph', default=False, description="Build the Boost Graph library") depends_on('icu', when='+icu_support') @@ -128,8 +133,7 @@ class Boost(Package): parts = [str(p) for p in Version(version)] dots = ".".join(parts) underscores = "_".join(parts) - return "http://downloads.sourceforge.net/project/boost" \ - "/boost/%s/boost_%s.tar.bz2" % (dots, underscores) + return "http://downloads.sourceforge.net/project/boost/boost/%s/boost_%s.tar.bz2" % (dots, underscores) def determine_toolset(self, spec): if spec.satisfies("platform=darwin"): @@ -158,7 +162,7 @@ class Boost(Package): with open('user-config.jam', 'w') as f: compiler_wrapper = join_path(spack.build_env_path, 'c++') f.write("using {0} : : {1} ;\n".format(boostToolsetId, - compiler_wrapper)) + compiler_wrapper)) if '+mpi' in spec: f.write('using mpi : %s ;\n' % diff --git a/var/spack/repos/builtin/packages/bowtie2/package.py b/var/spack/repos/builtin/packages/bowtie2/package.py index 6d641da49b..a8a1a34ed4 100644 --- a/var/spack/repos/builtin/packages/bowtie2/package.py +++ b/var/spack/repos/builtin/packages/bowtie2/package.py @@ -24,12 +24,15 @@ ############################################################################## from spack import * from glob import glob + + class Bowtie2(Package): """Description""" homepage = "bowtie-bio.sourceforge.net/bowtie2/index.shtml" - version('2.2.5','51fa97a862d248d7ee660efc1147c75f', url = "http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip") + version('2.2.5', '51fa97a862d248d7ee660efc1147c75f', + url="http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.5/bowtie2-2.2.5-source.zip") - patch('bowtie2-2.5.patch',when='@2.2.5', level=0) + patch('bowtie2-2.5.patch', when='@2.2.5', level=0) def install(self, spec, prefix): make() @@ -45,4 +48,3 @@ class Bowtie2(Package): # install('bowtie2-inspect',prefix.bin) # install('bowtie2-inspect-l',prefix.bin) # install('bowtie2-inspect-s',prefix.bin) - diff --git a/var/spack/repos/builtin/packages/boxlib/package.py b/var/spack/repos/builtin/packages/boxlib/package.py index 216ae1ec12..4f41aba6c6 100644 --- a/var/spack/repos/builtin/packages/boxlib/package.py +++ b/var/spack/repos/builtin/packages/boxlib/package.py @@ -24,12 +24,13 @@ ############################################################################## from spack import * + class Boxlib(Package): """BoxLib, a software framework for massively parallel block-structured adaptive mesh refinement (AMR) codes.""" homepage = "https://ccse.lbl.gov/BoxLib/" - url = "https://ccse.lbl.gov/pub/Downloads/BoxLib.git"; + url = "https://ccse.lbl.gov/pub/Downloads/BoxLib.git" # TODO: figure out how best to version this. No tags in the repo! version('master', git='https://ccse.lbl.gov/pub/Downloads/BoxLib.git') @@ -47,4 +48,3 @@ class Boxlib(Package): cmake('.', *args) make() make("install") - diff --git a/var/spack/repos/builtin/packages/c-blosc/package.py b/var/spack/repos/builtin/packages/c-blosc/package.py index 49f9861126..4ebf3811a5 100644 --- a/var/spack/repos/builtin/packages/c-blosc/package.py +++ b/var/spack/repos/builtin/packages/c-blosc/package.py @@ -27,6 +27,7 @@ import sys from spack import * + class CBlosc(Package): """Blosc, an extremely fast, multi-threaded, meta-compressor library""" homepage = "http://www.blosc.org" diff --git a/var/spack/repos/builtin/packages/caliper/package.py b/var/spack/repos/builtin/packages/caliper/package.py index 4a0fc54acc..e5aed5ed65 100644 --- a/var/spack/repos/builtin/packages/caliper/package.py +++ b/var/spack/repos/builtin/packages/caliper/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Caliper(Package): """ Caliper is a generic context annotation system. It gives programmers the @@ -44,7 +45,7 @@ class Caliper(Package): depends_on('cmake', type='build') def install(self, spec, prefix): - with working_dir('build', create=True): - cmake('..', *std_cmake_args) - make() - make("install") + with working_dir('build', create=True): + cmake('..', *std_cmake_args) + make() + make("install") diff --git a/var/spack/repos/builtin/packages/callpath/package.py b/var/spack/repos/builtin/packages/callpath/package.py index 2f171fb9ce..f8227fa49e 100644 --- a/var/spack/repos/builtin/packages/callpath/package.py +++ b/var/spack/repos/builtin/packages/callpath/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Callpath(Package): """Library for representing callpaths consistently in distributed-memory performance tools.""" diff --git a/var/spack/repos/builtin/packages/cantera/package.py b/var/spack/repos/builtin/packages/cantera/package.py index 8e4f23046b..9c9c035325 100644 --- a/var/spack/repos/builtin/packages/cantera/package.py +++ b/var/spack/repos/builtin/packages/cantera/package.py @@ -35,11 +35,16 @@ class Cantera(Package): version('2.2.1', '9d1919bdef39ddec54485fc8a741a3aa') - variant('lapack', default=True, description='Build with external BLAS/LAPACK libraries') - variant('threadsafe', default=True, description='Build threadsafe, requires Boost') - variant('sundials', default=True, description='Build with external Sundials') - variant('python', default=False, description='Build the Cantera Python module') - variant('matlab', default=False, description='Build the Cantera Matlab toolbox') + variant('lapack', default=True, + description='Build with external BLAS/LAPACK libraries') + variant('threadsafe', default=True, + description='Build threadsafe, requires Boost') + variant('sundials', default=True, + description='Build with external Sundials') + variant('python', default=False, + description='Build the Cantera Python module') + variant('matlab', default=False, + description='Build the Cantera Matlab toolbox') # Required dependencies depends_on('scons', type='build') diff --git a/var/spack/repos/builtin/packages/cblas/package.py b/var/spack/repos/builtin/packages/cblas/package.py index 0b85c5842a..0828141307 100644 --- a/var/spack/repos/builtin/packages/cblas/package.py +++ b/var/spack/repos/builtin/packages/cblas/package.py @@ -23,7 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os + class Cblas(Package): """The BLAS (Basic Linear Algebra Subprograms) are routines that @@ -42,11 +42,11 @@ class Cblas(Package): def patch(self): mf = FileFilter('Makefile.in') - mf.filter('^BLLIB =.*', 'BLLIB = %s/libblas.a' % self.spec['blas'].prefix.lib) + mf.filter('^BLLIB =.*', 'BLLIB = %s/libblas.a' % + self.spec['blas'].prefix.lib) mf.filter('^CC =.*', 'CC = cc') mf.filter('^FC =.*', 'FC = f90') - def install(self, spec, prefix): make('all') mkdirp(prefix.lib) @@ -54,6 +54,5 @@ class Cblas(Package): # Rename the generated lib file to libcblas.a install('./lib/cblas_LINUX.a', '%s/libcblas.a' % prefix.lib) - install('./include/cblas.h','%s' % prefix.include) - install('./include/cblas_f77.h','%s' % prefix.include) - + install('./include/cblas.h', '%s' % prefix.include) + install('./include/cblas_f77.h', '%s' % prefix.include) diff --git a/var/spack/repos/builtin/packages/cbtf-argonavis/package.py b/var/spack/repos/builtin/packages/cbtf-argonavis/package.py index 321d02b556..cbf36c3b61 100644 --- a/var/spack/repos/builtin/packages/cbtf-argonavis/package.py +++ b/var/spack/repos/builtin/packages/cbtf-argonavis/package.py @@ -22,7 +22,7 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -################################################################################ +########################################################################## # Copyright (c) 2015-2016 Krell Institute. All Rights Reserved. # # This program is free software; you can redistribute it and/or modify it under @@ -38,20 +38,24 @@ # You should have received a copy of the GNU General Public License along with # this program; if not, write to the Free Software Foundation, Inc., 59 Temple # Place, Suite 330, Boston, MA 02111-1307 USA -################################################################################ +########################################################################## from spack import * + class CbtfArgonavis(Package): - """CBTF Argo Navis project contains the CUDA collector and supporting - libraries that was done as a result of a DOE SBIR grant.""" + """CBTF Argo Navis project contains the CUDA collector and supporting + libraries that was done as a result of a DOE SBIR grant. + + """ homepage = "http://sourceforge.net/p/cbtf/wiki/Home/" # Mirror access template example - #url = "file:/home/jeg/OpenSpeedShop_ROOT/SOURCES/cbtf-argonavis-1.6.tar.gz" - #version('1.6', '0fafa0008478405c2c2319450f174ed4') + # url = "file:/home/jeg/OpenSpeedShop_ROOT/SOURCES/cbtf-argonavis-1.6.tar.gz" + # version('1.6', '0fafa0008478405c2c2319450f174ed4') - version('1.6', branch='master', git='https://github.com/OpenSpeedShop/cbtf-argonavis.git') + version('1.6', branch='master', + git='https://github.com/OpenSpeedShop/cbtf-argonavis.git') depends_on("cmake@3.0.2", type='build') depends_on("boost@1.50.0:") @@ -60,17 +64,19 @@ class CbtfArgonavis(Package): depends_on("cbtf") depends_on("cbtf-krell") depends_on("cuda@6.0.37") - #depends_on("cuda") + # depends_on("cuda") parallel = False def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions): - # Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings + # Sets build type parameters into cmakeOptions the options that will + # enable the cbtf-krell built type settings - compile_flags="-O2 -g" + compile_flags = "-O2 -g" BuildTypeOptions = [] - # Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs + # Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the + # stdcmakeargs for word in cmakeOptions[:]: if word.startswith('-DCMAKE_BUILD_TYPE'): cmakeOptions.remove(word) @@ -81,50 +87,54 @@ class CbtfArgonavis(Package): if word.startswith('-DCMAKE_VERBOSE_MAKEFILE'): cmakeOptions.remove(word) BuildTypeOptions.extend([ - '-DCMAKE_VERBOSE_MAKEFILE=ON', - '-DCMAKE_BUILD_TYPE=None', - '-DCMAKE_CXX_FLAGS=%s' % compile_flags, - '-DCMAKE_C_FLAGS=%s' % compile_flags + '-DCMAKE_VERBOSE_MAKEFILE=ON', + '-DCMAKE_BUILD_TYPE=None', + '-DCMAKE_CXX_FLAGS=%s' % compile_flags, + '-DCMAKE_C_FLAGS=%s' % compile_flags ]) cmakeOptions.extend(BuildTypeOptions) - def install(self, spec, prefix): - # Look for package installation information in the cbtf and cbtf-krell prefixes - cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix) - - with working_dir('CUDA'): - with working_dir('build', create=True): - - cmakeOptions = [] - cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix, - '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, - '-DCUDA_DIR=%s' % spec['cuda'].prefix, - '-DCUDA_INSTALL_PATH=%s' % spec['cuda'].prefix, - '-DCUDA_TOOLKIT_ROOT_DIR=%s' % spec['cuda'].prefix, - '-DCUPTI_DIR=%s' % join_path(spec['cuda'].prefix + '/extras/CUPTI'), - '-DCUPTI_ROOT=%s' % join_path(spec['cuda'].prefix + '/extras/CUPTI'), - '-DPAPI_ROOT=%s' % spec['papi'].prefix, - '-DCBTF_DIR=%s' % spec['cbtf'].prefix, - '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, - '-DBOOST_ROOT=%s' % spec['boost'].prefix, - '-DBoost_DIR=%s' % spec['boost'].prefix, - '-DBOOST_LIBRARYDIR=%s' % spec['boost'].prefix.lib, - '-DMRNET_DIR=%s' % spec['mrnet'].prefix, - '-DBoost_NO_SYSTEM_PATHS=ON' - ]) - - # Add in the standard cmake arguments - cmakeOptions.extend(std_cmake_args) - - # Adjust the standard cmake arguments to what we want the build type, etc to be - self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions) - - # Invoke cmake - cmake('..', *cmakeOptions) - - make("clean") - make() - make("install") + # Look for package installation information in the cbtf and cbtf-krell + # prefixes + cmake_prefix_path = join_path( + spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix) + + with working_dir('CUDA'): + with working_dir('build', create=True): + + cmakeOptions = [] + cmakeOptions.extend( + ['-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, + '-DCUDA_DIR=%s' % spec['cuda'].prefix, + '-DCUDA_INSTALL_PATH=%s' % spec['cuda'].prefix, + '-DCUDA_TOOLKIT_ROOT_DIR=%s' % spec['cuda'].prefix, + '-DCUPTI_DIR=%s' % join_path( + spec['cuda'].prefix + '/extras/CUPTI'), + '-DCUPTI_ROOT=%s' % join_path( + spec['cuda'].prefix + '/extras/CUPTI'), + '-DPAPI_ROOT=%s' % spec['papi'].prefix, + '-DCBTF_DIR=%s' % spec['cbtf'].prefix, + '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, + '-DBOOST_ROOT=%s' % spec['boost'].prefix, + '-DBoost_DIR=%s' % spec['boost'].prefix, + '-DBOOST_LIBRARYDIR=%s' % spec['boost'].prefix.lib, + '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + '-DBoost_NO_SYSTEM_PATHS=ON']) + + # Add in the standard cmake arguments + cmakeOptions.extend(std_cmake_args) + + # Adjust the standard cmake arguments to what we want the build + # type, etc to be + self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions) + + # Invoke cmake + cmake('..', *cmakeOptions) + + make("clean") + make() + make("install") diff --git a/var/spack/repos/builtin/packages/cbtf-krell/package.py b/var/spack/repos/builtin/packages/cbtf-krell/package.py index acb78a7395..6f15c3f835 100644 --- a/var/spack/repos/builtin/packages/cbtf-krell/package.py +++ b/var/spack/repos/builtin/packages/cbtf-krell/package.py @@ -22,7 +22,7 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -################################################################################ +########################################################################## # Copyright (c) 2015-2016 Krell Institute. All Rights Reserved. # # This program is free software; you can redistribute it and/or modify it under @@ -38,30 +38,40 @@ # You should have received a copy of the GNU General Public License along with # this program; if not, write to the Free Software Foundation, Inc., 59 Temple # Place, Suite 330, Boston, MA 02111-1307 USA -################################################################################ +########################################################################## from spack import * + class CbtfKrell(Package): - """CBTF Krell project contains the Krell Institute contributions to the CBTF project. - These contributions include many performance data collectors and support - libraries as well as some example tools that drive the data collection at - HPC levels of scale.""" + """CBTF Krell project contains the Krell Institute contributions to the + CBTF project. These contributions include many performance data + collectors and support libraries as well as some example tools + that drive the data collection at HPC levels of scale. + + """ homepage = "http://sourceforge.net/p/cbtf/wiki/Home/" # optional mirror access template - #url = "file:/home/jeg/cbtf-krell-1.6.tar.gz" - #version('1.6', 'edeb61cd488f16e7b124f77db9ce762d') + # url = "file:/home/jeg/cbtf-krell-1.6.tar.gz" + # version('1.6', 'edeb61cd488f16e7b124f77db9ce762d') - version('1.6', branch='master', git='https://github.com/OpenSpeedShop/cbtf-krell.git') + version('1.6', branch='master', + git='https://github.com/OpenSpeedShop/cbtf-krell.git') # MPI variants - variant('openmpi', default=False, description="Build mpi experiment collector for openmpi MPI when this variant is enabled.") - variant('mpt', default=False, description="Build mpi experiment collector for SGI MPT MPI when this variant is enabled.") - variant('mvapich2', default=False, description="Build mpi experiment collector for mvapich2 MPI when this variant is enabled.") - variant('mvapich', default=False, description="Build mpi experiment collector for mvapich MPI when this variant is enabled.") - variant('mpich2', default=False, description="Build mpi experiment collector for mpich2 MPI when this variant is enabled.") - variant('mpich', default=False, description="Build mpi experiment collector for mpich MPI when this variant is enabled.") + variant('openmpi', default=False, + description="Build mpi experiment collector for openmpi MPI..") + variant('mpt', default=False, + description="Build mpi experiment collector for SGI MPT MPI.") + variant('mvapich2', default=False, + description="Build mpi experiment collector for mvapich2 MPI.") + variant('mvapich', default=False, + description="Build mpi experiment collector for mvapich MPI.") + variant('mpich2', default=False, + description="Build mpi experiment collector for mpich2 MPI.") + variant('mpich', default=False, + description="Build mpi experiment collector for mpich MPI.") # Dependencies for cbtf-krell depends_on("cmake@3.0.2", type='build') @@ -83,7 +93,8 @@ class CbtfKrell(Package): depends_on("papi") # MPI Installations - # These have not worked either for build or execution, commenting out for now + # These have not worked either for build or execution, commenting out for + # now depends_on("openmpi", when='+openmpi') depends_on("mpich", when='+mpich') depends_on("mpich2", when='+mpich2') @@ -94,11 +105,13 @@ class CbtfKrell(Package): parallel = False def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions): - # Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings - - compile_flags="-O2 -g" + # Sets build type parameters into cmakeOptions the options that will + # enable the cbtf-krell built type settings + + compile_flags = "-O2 -g" BuildTypeOptions = [] - # Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs + # Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the + # stdcmakeargs for word in cmakeOptions[:]: if word.startswith('-DCMAKE_BUILD_TYPE'): cmakeOptions.remove(word) @@ -109,75 +122,76 @@ class CbtfKrell(Package): if word.startswith('-DCMAKE_VERBOSE_MAKEFILE'): cmakeOptions.remove(word) BuildTypeOptions.extend([ - '-DCMAKE_VERBOSE_MAKEFILE=ON', - '-DCMAKE_BUILD_TYPE=None', - '-DCMAKE_CXX_FLAGS=%s' % compile_flags, - '-DCMAKE_C_FLAGS=%s' % compile_flags + '-DCMAKE_VERBOSE_MAKEFILE=ON', + '-DCMAKE_BUILD_TYPE=None', + '-DCMAKE_CXX_FLAGS=%s' % compile_flags, + '-DCMAKE_C_FLAGS=%s' % compile_flags ]) cmakeOptions.extend(BuildTypeOptions) - - def set_mpi_cmakeOptions(self, spec, cmakeOptions): - # Appends to cmakeOptions the options that will enable the appropriate MPI implementations - + # Appends to cmakeOptions the options that will enable the appropriate + # MPI implementations + MPIOptions = [] # openmpi if '+openmpi' in spec: MPIOptions.extend([ - '-DOPENMPI_DIR=%s' % spec['openmpi'].prefix + '-DOPENMPI_DIR=%s' % spec['openmpi'].prefix ]) # mpich if '+mpich' in spec: MPIOptions.extend([ - '-DMPICH_DIR=%s' % spec['mpich'].prefix + '-DMPICH_DIR=%s' % spec['mpich'].prefix ]) # mpich2 if '+mpich2' in spec: MPIOptions.extend([ - '-DMPICH2_DIR=%s' % spec['mpich2'].prefix + '-DMPICH2_DIR=%s' % spec['mpich2'].prefix ]) # mvapich if '+mvapich' in spec: MPIOptions.extend([ - '-DMVAPICH_DIR=%s' % spec['mvapich'].prefix + '-DMVAPICH_DIR=%s' % spec['mvapich'].prefix ]) # mvapich2 if '+mvapich2' in spec: MPIOptions.extend([ - '-DMVAPICH2_DIR=%s' % spec['mvapich2'].prefix + '-DMVAPICH2_DIR=%s' % spec['mvapich2'].prefix ]) # mpt if '+mpt' in spec: MPIOptions.extend([ - '-DMPT_DIR=%s' % spec['mpt'].prefix + '-DMPT_DIR=%s' % spec['mpt'].prefix ]) cmakeOptions.extend(MPIOptions) def install(self, spec, prefix): - # Add in paths for finding package config files that tell us where to find these packages - #cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['dyninst'].prefix) - #'-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path + # Add in paths for finding package config files that tell us + # where to find these packages + # cmake_prefix_path = \ + # join_path(spec['cbtf'].prefix) + ':' + \ + # join_path(spec['dyninst'].prefix) + # '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path - # Build cbtf-krell with cmake + # Build cbtf-krell with cmake with working_dir('build_cbtf_krell', create=True): cmakeOptions = [] - cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix, - '-DCBTF_DIR=%s' % spec['cbtf'].prefix, - '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, - '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix, - '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix, - '-DPAPI_DIR=%s' % spec['papi'].prefix, - '-DBOOST_DIR=%s' % spec['boost'].prefix, - '-DMRNET_DIR=%s' % spec['mrnet'].prefix, - '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, - '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix - ]) - + cmakeOptions.extend( + ['-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCBTF_DIR=%s' % spec['cbtf'].prefix, + '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, + '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix, + '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix, + '-DPAPI_DIR=%s' % spec['papi'].prefix, + '-DBOOST_DIR=%s' % spec['boost'].prefix, + '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, + '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix]) # Add any MPI implementations coming from variant settings self.set_mpi_cmakeOptions(spec, cmakeOptions) @@ -185,9 +199,10 @@ class CbtfKrell(Package): # Add in the standard cmake arguments cmakeOptions.extend(std_cmake_args) - # Adjust the standard cmake arguments to what we want the build type, etc to be + # Adjust the standard cmake arguments to what we want the build + # type, etc to be self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions) - + # Invoke cmake cmake('..', *cmakeOptions) @@ -195,56 +210,54 @@ class CbtfKrell(Package): make() make("install") - - - #if '+cray' in spec: - #if 'cray' in self.spec.architecture: + # if '+cray' in spec: + # if 'cray' in self.spec.architecture: # if '+runtime' in spec: # with working_dir('build_cbtf_cray_runtime', create=True): # python_vers='%d.%d' % spec['python'].version[:2] # cmake .. \ - # -DCMAKE_BUILD_TYPE=Debug \ - # -DTARGET_OS="cray" \ - # -DRUNTIME_ONLY="true" \ - # -DCMAKE_INSTALL_PREFIX=${CBTF_KRELL_PREFIX} \ - # -DCMAKE_PREFIX_PATH=${CBTF_ROOT} \ - # -DCBTF_DIR=${CBTF_ROOT} \ - # -DBOOST_ROOT=${BOOST_INSTALL_PREFIX} \ - # -DXERCESC_DIR=${XERCESC_INSTALL_PREFIX} \ - # -DBINUTILS_DIR=${KRELL_ROOT} \ - # -DLIBMONITOR_DIR=${KRELL_ROOT_COMPUTE} \ - # -DLIBUNWIND_DIR=${KRELL_ROOT_COMPUTE} \ - # -DPAPI_DIR=${PAPI_ROOT} \ - # -DDYNINST_DIR=${DYNINST_CN_ROOT} \ - # -DMRNET_DIR=${MRNET_INSTALL_PREFIX} \ - # -DMPICH2_DIR=/opt/cray/mpt/7.0.1/gni/mpich2-gnu/48 + # -DCMAKE_BUILD_TYPE=Debug \ + # -DTARGET_OS="cray" \ + # -DRUNTIME_ONLY="true" \ + # -DCMAKE_INSTALL_PREFIX=${CBTF_KRELL_PREFIX} \ + # -DCMAKE_PREFIX_PATH=${CBTF_ROOT} \ + # -DCBTF_DIR=${CBTF_ROOT} \ + # -DBOOST_ROOT=${BOOST_INSTALL_PREFIX} \ + # -DXERCESC_DIR=${XERCESC_INSTALL_PREFIX} \ + # -DBINUTILS_DIR=${KRELL_ROOT} \ + # -DLIBMONITOR_DIR=${KRELL_ROOT_COMPUTE} \ + # -DLIBUNWIND_DIR=${KRELL_ROOT_COMPUTE} \ + # -DPAPI_DIR=${PAPI_ROOT} \ + # -DDYNINST_DIR=${DYNINST_CN_ROOT} \ + # -DMRNET_DIR=${MRNET_INSTALL_PREFIX} \ + # -DMPICH2_DIR=/opt/cray/mpt/7.0.1/gni/mpich2-gnu/48 # else: # with working_dir('build_cbtf_cray_frontend', create=True): # python_vers='%d.%d' % spec['python'].version[:2] # cmake .. \ - # -DCMAKE_BUILD_TYPE=Debug \ - # -DCMAKE_INSTALL_PREFIX=${CBTF_KRELL_PREFIX} \ - # -DCMAKE_PREFIX_PATH=${CBTF_ROOT} \ - # -DCBTF_DIR=${CBTF_ROOT} \ - # -DRUNTIME_TARGET_OS="cray" \ - # -DCBTF_KRELL_CN_RUNTIME_DIR=${CBTF_KRELL_CN_RUNTIME_ROOT} \ - # -DCBTF_CN_RUNTIME_DIR=${CBTF_CN_RUNTIME_ROOT} \ - # -DLIBMONITOR_CN_RUNTIME_DIR=${LIBMONITOR_CN_ROOT} \ - # -DLIBUNWIND_CN_RUNTIME_DIR=${LIBUNWIND_CN_ROOT} \ - # -DPAPI_CN_RUNTIME_DIR=${PAPI_CN_ROOT} \ - # -DXERCESC_CN_RUNTIME_DIR=/${XERCESC_CN_ROOT} \ - # -DMRNET_CN_RUNTIME_DIR=${MRNET_CN_ROOT} \ - # -DBOOST_CN_RUNTIME_DIR=${BOOST_CN_ROOT} \ - # -DDYNINST_CN_RUNTIME_DIR=${DYNINST_CN_ROOT} \ - # -DBOOST_ROOT=/${KRELL_ROOT} \ - # -DXERCESC_DIR=/${KRELL_ROOT} \ - # -DBINUTILS_DIR=/${KRELL_ROOT} \ - # -DLIBMONITOR_DIR=${KRELL_ROOT} \ - # -DLIBUNWIND_DIR=${KRELL_ROOT} \ - # -DPAPI_DIR=${PAPI_ROOT} \ - # -DDYNINST_DIR=${KRELL_ROOT} \ - # -DMRNET_DIR=${KRELL_ROOT} \ - # -DMPICH2_DIR=/opt/cray/mpt/7.0.1/gni/mpich2-gnu/48 + # -DCMAKE_BUILD_TYPE=Debug \ + # -DCMAKE_INSTALL_PREFIX=${CBTF_KRELL_PREFIX} \ + # -DCMAKE_PREFIX_PATH=${CBTF_ROOT} \ + # -DCBTF_DIR=${CBTF_ROOT} \ + # -DRUNTIME_TARGET_OS="cray" \ + # -DCBTF_KRELL_CN_RUNTIME_DIR=${CBTF_KRELL_CN_RUNTIME_ROOT} \ + # -DCBTF_CN_RUNTIME_DIR=${CBTF_CN_RUNTIME_ROOT} \ + # -DLIBMONITOR_CN_RUNTIME_DIR=${LIBMONITOR_CN_ROOT} \ + # -DLIBUNWIND_CN_RUNTIME_DIR=${LIBUNWIND_CN_ROOT} \ + # -DPAPI_CN_RUNTIME_DIR=${PAPI_CN_ROOT} \ + # -DXERCESC_CN_RUNTIME_DIR=/${XERCESC_CN_ROOT} \ + # -DMRNET_CN_RUNTIME_DIR=${MRNET_CN_ROOT} \ + # -DBOOST_CN_RUNTIME_DIR=${BOOST_CN_ROOT} \ + # -DDYNINST_CN_RUNTIME_DIR=${DYNINST_CN_ROOT} \ + # -DBOOST_ROOT=/${KRELL_ROOT} \ + # -DXERCESC_DIR=/${KRELL_ROOT} \ + # -DBINUTILS_DIR=/${KRELL_ROOT} \ + # -DLIBMONITOR_DIR=${KRELL_ROOT} \ + # -DLIBUNWIND_DIR=${KRELL_ROOT} \ + # -DPAPI_DIR=${PAPI_ROOT} \ + # -DDYNINST_DIR=${KRELL_ROOT} \ + # -DMRNET_DIR=${KRELL_ROOT} \ + # -DMPICH2_DIR=/opt/cray/mpt/7.0.1/gni/mpich2-gnu/48 # fi # # make("clean") @@ -264,22 +277,22 @@ class CbtfKrell(Package): # fi # # else: -# # Build cbtf-krell with cmake +# # Build cbtf-krell with cmake # with working_dir('build_cbtf_krell', create=True): # cmake('..', # '-DCMAKE_BUILD_TYPE=Debug', -# '-DCMAKE_INSTALL_PREFIX=%s' % prefix, -# '-DCBTF_DIR=%s' % spec['cbtf'].prefix, -# '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, -# '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix, -# '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix, -# '-DPAPI_DIR=%s' % spec['papi'].prefix, -# '-DBOOST_DIR=%s' % spec['boost'].prefix, -# '-DMRNET_DIR=%s' % spec['mrnet'].prefix, -# '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, -# '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, -# '-DOPENMPI_DIR=%s' % openmpi_prefix_path, -# '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, +# '-DCMAKE_INSTALL_PREFIX=%s' % prefix, +# '-DCBTF_DIR=%s' % spec['cbtf'].prefix, +# '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, +# '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix, +# '-DLIBUNWIND_DIR=%s'% spec['libunwind'].prefix, +# '-DPAPI_DIR=%s' % spec['papi'].prefix, +# '-DBOOST_DIR=%s' % spec['boost'].prefix, +# '-DMRNET_DIR=%s' % spec['mrnet'].prefix, +# '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, +# '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, +# '-DOPENMPI_DIR=%s' % openmpi_prefix_path, +# '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, # *std_cmake_args) # # make("clean") diff --git a/var/spack/repos/builtin/packages/cbtf-lanl/package.py b/var/spack/repos/builtin/packages/cbtf-lanl/package.py index 5694535fcc..b614a325f9 100644 --- a/var/spack/repos/builtin/packages/cbtf-lanl/package.py +++ b/var/spack/repos/builtin/packages/cbtf-lanl/package.py @@ -22,7 +22,7 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -################################################################################ +########################################################################## # Copyright (c) 2015-2016 Krell Institute. All Rights Reserved. # # This program is free software; you can redistribute it and/or modify it under @@ -38,20 +38,22 @@ # You should have received a copy of the GNU General Public License along with # this program; if not, write to the Free Software Foundation, Inc., 59 Temple # Place, Suite 330, Boston, MA 02111-1307 USA -################################################################################ +########################################################################## from spack import * + class CbtfLanl(Package): - """CBTF LANL project contains a memory tool and data center type system command monitoring tool.""" + """CBTF LANL project contains a memory tool and data center type system + command monitoring tool.""" homepage = "http://sourceforge.net/p/cbtf/wiki/Home/" - # Mirror access template example - #url = "file:/g/g24/jeg/cbtf-lanl-1.5.tar.gz" - #version('1.5', 'c3f78f967b0a42c6734ce4be0e602426') + # url = "file:/g/g24/jeg/cbtf-lanl-1.5.tar.gz" + # version('1.5', 'c3f78f967b0a42c6734ce4be0e602426') - version('1.6', branch='master', git='http://git.code.sf.net/p/cbtf-lanl/cbtf-lanl') + version('1.6', branch='master', + git='http://git.code.sf.net/p/cbtf-lanl/cbtf-lanl') depends_on("cmake@3.0.2", type='build') # Dependencies for cbtf-krell @@ -63,11 +65,13 @@ class CbtfLanl(Package): parallel = False def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions): - # Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings + # Sets build type parameters into cmakeOptions the options that will + # enable the cbtf-krell built type settings - compile_flags="-O2 -g" + compile_flags = "-O2 -g" BuildTypeOptions = [] - # Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs + # Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the + # stdcmakeargs for word in cmakeOptions[:]: if word.startswith('-DCMAKE_BUILD_TYPE'): cmakeOptions.remove(word) @@ -78,40 +82,43 @@ class CbtfLanl(Package): if word.startswith('-DCMAKE_VERBOSE_MAKEFILE'): cmakeOptions.remove(word) BuildTypeOptions.extend([ - '-DCMAKE_VERBOSE_MAKEFILE=ON', - '-DCMAKE_BUILD_TYPE=None', - '-DCMAKE_CXX_FLAGS=%s' % compile_flags, - '-DCMAKE_C_FLAGS=%s' % compile_flags + '-DCMAKE_VERBOSE_MAKEFILE=ON', + '-DCMAKE_BUILD_TYPE=None', + '-DCMAKE_CXX_FLAGS=%s' % compile_flags, + '-DCMAKE_C_FLAGS=%s' % compile_flags ]) cmakeOptions.extend(BuildTypeOptions) def install(self, spec, prefix): - # Add in paths for finding package config files that tell us where to find these packages - cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix) - - with working_dir('build', create=True): - cmakeOptions = [] - cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix, - '-DCBTF_DIR=%s' % spec['cbtf'].prefix, - '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, - '-DMRNET_DIR=%s' % spec['mrnet'].prefix, - '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, - '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, - '-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake') - ]) - - # Add in the standard cmake arguments - cmakeOptions.extend(std_cmake_args) - - # Adjust the standard cmake arguments to what we want the build type, etc to be - self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions) - - # Invoke cmake - cmake('..', *cmakeOptions) - - make("clean") - make() - make("install") - + # Add in paths for finding package config files that tell us where to + # find these packages + cmake_prefix_path = join_path( + spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix) + + with working_dir('build', create=True): + cmakeOptions = [] + cmakeOptions.extend( + ['-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCBTF_DIR=%s' % spec['cbtf'].prefix, + '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, + '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, + '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, + '-DCMAKE_MODULE_PATH=%s' % join_path( + prefix.share, 'KrellInstitute', 'cmake')]) + + # Add in the standard cmake arguments + cmakeOptions.extend(std_cmake_args) + + # Adjust the standard cmake arguments to what we want the build + # type, etc to be + self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions) + + # Invoke cmake + cmake('..', *cmakeOptions) + + make("clean") + make() + make("install") diff --git a/var/spack/repos/builtin/packages/cbtf/package.py b/var/spack/repos/builtin/packages/cbtf/package.py index 017b897f3c..bc3116bf2a 100644 --- a/var/spack/repos/builtin/packages/cbtf/package.py +++ b/var/spack/repos/builtin/packages/cbtf/package.py @@ -22,7 +22,7 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -################################################################################ +########################################################################## # Copyright (c) 2015-2016 Krell Institute. All Rights Reserved. # # This program is free software; you can redistribute it and/or modify it under @@ -38,24 +38,30 @@ # You should have received a copy of the GNU General Public License along with # this program; if not, write to the Free Software Foundation, Inc., 59 Temple # Place, Suite 330, Boston, MA 02111-1307 USA -################################################################################ +########################################################################## from spack import * + class Cbtf(Package): - """CBTF project contains the base code for CBTF that supports creating components, - component networks and the support to connect these components and component - networks into sequential and distributed network tools.""" + """CBTF project contains the base code for CBTF that supports creating + components, component networks and the support to connect these + components and component networks into sequential and distributed + network tools. + + """ homepage = "http://sourceforge.net/p/cbtf/wiki/Home" # Mirror access template example - #url = "file:/home/jeg/cbtf-1.6.tar.gz" - #version('1.6', 'c1ef4e5aa4e470dffb042abdba0b9987') + # url = "file:/home/jeg/cbtf-1.6.tar.gz" + # version('1.6', 'c1ef4e5aa4e470dffb042abdba0b9987') # Use when the git repository is available - version('1.6', branch='master', git='https://github.com/OpenSpeedShop/cbtf.git') + version('1.6', branch='master', + git='https://github.com/OpenSpeedShop/cbtf.git') - variant('runtime', default=False, description="build only the runtime libraries and collectors.") + variant('runtime', default=False, + description="build only the runtime libraries and collectors.") depends_on("cmake@3.0.2", type='build') depends_on("boost@1.50.0:") @@ -67,11 +73,13 @@ class Cbtf(Package): parallel = False def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions): - # Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings - - compile_flags="-O2 -g" + # Sets build type parameters into cmakeOptions the options that will + # enable the cbtf-krell built type settings + + compile_flags = "-O2 -g" BuildTypeOptions = [] - # Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs + # Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the + # stdcmakeargs for word in cmakeOptions[:]: if word.startswith('-DCMAKE_BUILD_TYPE'): cmakeOptions.remove(word) @@ -80,61 +88,66 @@ class Cbtf(Package): if word.startswith('-DCMAKE_C_FLAGS'): cmakeOptions.remove(word) BuildTypeOptions.extend([ - '-DCMAKE_BUILD_TYPE=None', - '-DCMAKE_CXX_FLAGS=%s' % compile_flags, - '-DCMAKE_C_FLAGS=%s' % compile_flags + '-DCMAKE_BUILD_TYPE=None', + '-DCMAKE_CXX_FLAGS=%s' % compile_flags, + '-DCMAKE_C_FLAGS=%s' % compile_flags ]) cmakeOptions.extend(BuildTypeOptions) def install(self, spec, prefix): - with working_dir('build', create=True): - - # Boost_NO_SYSTEM_PATHS Set to TRUE to suppress searching - # in system paths (or other locations outside of BOOST_ROOT - # or BOOST_INCLUDEDIR). Useful when specifying BOOST_ROOT. - # Defaults to OFF. - - if '+runtime' in spec: - # Install message tag include file for use in Intel MIC cbtf-krell build - # FIXME - cmakeOptions = [] - cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix, - '-DBoost_NO_SYSTEM_PATHS=TRUE', - '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, - '-DBOOST_ROOT=%s' % spec['boost'].prefix, - '-DMRNET_DIR=%s' % spec['mrnet'].prefix, - '-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake') - ]) - - # Add in the standard cmake arguments - cmakeOptions.extend(std_cmake_args) - - # Adjust the standard cmake arguments to what we want the build type, etc to be - self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions) - - # Invoke cmake - cmake('..', *cmakeOptions) - - else: - cmakeOptions = [] - cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix, - '-DBoost_NO_SYSTEM_PATHS=TRUE', - '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, - '-DBOOST_ROOT=%s' % spec['boost'].prefix, - '-DMRNET_DIR=%s' % spec['mrnet'].prefix, - '-DCMAKE_MODULE_PATH=%s' % join_path(prefix.share,'KrellInstitute','cmake') - ]) - - # Add in the standard cmake arguments - cmakeOptions.extend(std_cmake_args) - - # Adjust the standard cmake arguments to what we want the build type, etc to be - self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions) - - # Invoke cmake - cmake('..', *cmakeOptions) - - make("clean") - make() - make("install") + with working_dir('build', create=True): + + # Boost_NO_SYSTEM_PATHS Set to TRUE to suppress searching + # in system paths (or other locations outside of BOOST_ROOT + # or BOOST_INCLUDEDIR). Useful when specifying BOOST_ROOT. + # Defaults to OFF. + + if '+runtime' in spec: + # Install message tag include file for use in Intel MIC + # cbtf-krell build + # FIXME + cmakeOptions = [] + cmakeOptions.extend( + ['-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DBoost_NO_SYSTEM_PATHS=TRUE', + '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, + '-DBOOST_ROOT=%s' % spec['boost'].prefix, + '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + '-DCMAKE_MODULE_PATH=%s' % join_path( + prefix.share, 'KrellInstitute', 'cmake')]) + + # Add in the standard cmake arguments + cmakeOptions.extend(std_cmake_args) + + # Adjust the standard cmake arguments to what we want the build + # type, etc to be + self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions) + + # Invoke cmake + cmake('..', *cmakeOptions) + + else: + cmakeOptions = [] + cmakeOptions.extend( + ['-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DBoost_NO_SYSTEM_PATHS=TRUE', + '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, + '-DBOOST_ROOT=%s' % spec['boost'].prefix, + '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + '-DCMAKE_MODULE_PATH=%s' % join_path( + prefix.share, 'KrellInstitute', 'cmake')]) + + # Add in the standard cmake arguments + cmakeOptions.extend(std_cmake_args) + + # Adjust the standard cmake arguments to what we want the build + # type, etc to be + self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions) + + # Invoke cmake + cmake('..', *cmakeOptions) + + make("clean") + make() + make("install") diff --git a/var/spack/repos/builtin/packages/cereal/package.py b/var/spack/repos/builtin/packages/cereal/package.py index 41dc9a274b..716e0103d1 100644 --- a/var/spack/repos/builtin/packages/cereal/package.py +++ b/var/spack/repos/builtin/packages/cereal/package.py @@ -26,8 +26,16 @@ from spack import * import os import shutil + class Cereal(Package): - """cereal is a header-only C++11 serialization library. cereal takes arbitrary data types and reversibly turns them into different representations, such as compact binary encodings, XML, or JSON. cereal was designed to be fast, light-weight, and easy to extend - it has no external dependencies and can be easily bundled with other code or used standalone.""" + """cereal is a header-only C++11 serialization library. cereal takes + arbitrary data types and reversibly turns them into different + representations, such as compact binary encodings, XML, or + JSON. cereal was designed to be fast, light-weight, and easy to + extend - it has no external dependencies and can be easily bundled + with other code or used standalone. + + """ homepage = "http://uscilab.github.io/cereal/" url = "https://github.com/USCiLab/cereal/archive/v1.1.2.tar.gz" diff --git a/var/spack/repos/builtin/packages/cfitsio/package.py b/var/spack/repos/builtin/packages/cfitsio/package.py index ed49ae5808..c68b3ffc0d 100644 --- a/var/spack/repos/builtin/packages/cfitsio/package.py +++ b/var/spack/repos/builtin/packages/cfitsio/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Cfitsio(Package): """ CFITSIO is a library of C and Fortran subroutines for reading and writing diff --git a/var/spack/repos/builtin/packages/cgal/package.py b/var/spack/repos/builtin/packages/cgal/package.py index 5c87978339..e522b4a5a0 100644 --- a/var/spack/repos/builtin/packages/cgal/package.py +++ b/var/spack/repos/builtin/packages/cgal/package.py @@ -27,10 +27,12 @@ from spack import * class Cgal(Package): - """ - CGAL is a software project that provides easy access to efficient and reliable geometric algorithms in the form of - a C++ library. CGAL is used in various areas needing geometric computation, such as geographic information systems, - computer aided design, molecular biology, medical imaging, computer graphics, and robotics. + """CGAL is a software project that provides easy access to efficient and + reliable geometric algorithms in the form of a C++ library. CGAL + is used in various areas needing geometric computation, such as + geographic information systems, computer aided design, molecular + biology, medical imaging, computer graphics, and robotics. + """ homepage = 'http://www.cgal.org/' url = 'https://github.com/CGAL/cgal/archive/releases/CGAL-4.7.tar.gz' @@ -38,9 +40,12 @@ class Cgal(Package): version('4.7', '4826714810f3b4c65cac96b90fb03b67') version('4.6.3', 'e8ee2ecc8d2b09b94a121c09257b576d') - # Installation instructions : http://doc.cgal.org/latest/Manual/installation.html - variant('shared', default=True, description='Enables the build of shared libraries') - variant('debug', default=False, description='Builds a debug version of the libraries') + # Installation instructions : + # http://doc.cgal.org/latest/Manual/installation.html + variant('shared', default=True, + description='Enables the build of shared libraries') + variant('debug', default=False, + description='Builds a debug version of the libraries') depends_on('boost') depends_on('mpfr') @@ -55,7 +60,8 @@ class Cgal(Package): options = [] options.extend(std_cmake_args) - # CGAL supports only Release and Debug build type. Any other build type will raise an error at configure time + # CGAL supports only Release and Debug build type. Any other build type + # will raise an error at configure time if '+debug' in spec: options.append('-DCMAKE_BUILD_TYPE:STRING=Debug') else: diff --git a/var/spack/repos/builtin/packages/cgm/package.py b/var/spack/repos/builtin/packages/cgm/package.py index c5da72d25a..5a998d471c 100644 --- a/var/spack/repos/builtin/packages/cgm/package.py +++ b/var/spack/repos/builtin/packages/cgm/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Cgm(Package): """The Common Geometry Module, Argonne (CGMA) is a code library which provides geometry functionality used for mesh generation and @@ -33,7 +34,7 @@ class Cgm(Package): version('13.1.1', '4e8dbc4ba8f65767b29f985f7a23b01f') version('13.1.0', 'a6c7b22660f164ce893fb974f9cb2028') - version('13.1' , '95f724bda04919fc76818a5b7bc0b4ed') + version('13.1', '95f724bda04919fc76818a5b7bc0b4ed') depends_on("mpi") @@ -42,7 +43,6 @@ class Cgm(Package): '//\1', 'geom/parallel/CGMReadParallel.cpp') - def install(self, spec, prefix): configure("--with-mpi", "--prefix=%s" % prefix, diff --git a/var/spack/repos/builtin/packages/cityhash/package.py b/var/spack/repos/builtin/packages/cityhash/package.py index caa15780e3..d6d7f51558 100644 --- a/var/spack/repos/builtin/packages/cityhash/package.py +++ b/var/spack/repos/builtin/packages/cityhash/package.py @@ -25,16 +25,18 @@ from spack import * from spack.util.environment import * + class Cityhash(Package): homepage = "https://github.com/google/cityhash" url = "https://github.com/google/cityhash" - version('2013-07-31', git='https://github.com/google/cityhash.git', commit='8af9b8c2b889d80c22d6bc26ba0df1afb79a30db') - version('master', branch='master', git='https://github.com/google/cityhash.git') + version('2013-07-31', git='https://github.com/google/cityhash.git', + commit='8af9b8c2b889d80c22d6bc26ba0df1afb79a30db') + version('master', branch='master', + git='https://github.com/google/cityhash.git') def install(self, spec, prefix): configure('--enable-sse4.2', '--prefix=%s' % prefix) make() make("install") - diff --git a/var/spack/repos/builtin/packages/cleverleaf/package.py b/var/spack/repos/builtin/packages/cleverleaf/package.py index c258e89514..61e6dca433 100644 --- a/var/spack/repos/builtin/packages/cleverleaf/package.py +++ b/var/spack/repos/builtin/packages/cleverleaf/package.py @@ -24,18 +24,21 @@ ############################################################################## from spack import * + class Cleverleaf(Package): - """ - CleverLeaf is a hydrodynamics mini-app that extends CloverLeaf with Adaptive - Mesh Refinement using the SAMRAI toolkit from Lawrence Livermore National - Laboratory. The primary goal of CleverLeaf is to evaluate the application of - AMR to the Lagrangian-Eulerian hydrodynamics scheme used by CloverLeaf. + """CleverLeaf is a hydrodynamics mini-app that extends CloverLeaf with + Adaptive Mesh Refinement using the SAMRAI toolkit from Lawrence + Livermore National Laboratory. The primary goal of CleverLeaf is + to evaluate the application of AMR to the Lagrangian-Eulerian + hydrodynamics scheme used by CloverLeaf. + """ homepage = "http://uk-mac.github.io/CleverLeaf/" url = "https://github.com/UK-MAC/CleverLeaf/tarball/master" - version('develop', git='https://github.com/UK-MAC/CleverLeaf_ref.git', branch='develop') + version('develop', git='https://github.com/UK-MAC/CleverLeaf_ref.git', + branch='develop') depends_on("SAMRAI@3.8.0:") depends_on("hdf5+mpi") diff --git a/var/spack/repos/builtin/packages/cloog/package.py b/var/spack/repos/builtin/packages/cloog/package.py index db3d2ac928..a979ae83fc 100644 --- a/var/spack/repos/builtin/packages/cloog/package.py +++ b/var/spack/repos/builtin/packages/cloog/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Cloog(Package): """CLooG is a free software and library to generate code for scanning Z-polyhedra. That is, it finds a code (e.g. in C, diff --git a/var/spack/repos/builtin/packages/cmake/package.py b/var/spack/repos/builtin/packages/cmake/package.py index bfb8764feb..90a7c20d19 100644 --- a/var/spack/repos/builtin/packages/cmake/package.py +++ b/var/spack/repos/builtin/packages/cmake/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Cmake(Package): """A cross-platform, open-source build system. CMake is a family of tools designed to build, test and package software.""" @@ -40,10 +41,13 @@ class Cmake(Package): version('3.0.2', 'db4c687a31444a929d2fdc36c4dfb95f') version('2.8.10.2', '097278785da7182ec0aea8769d06860c') - variant('ncurses', default=True, description='Enables the build of the ncurses gui') - variant('openssl', default=True, description="Enables CMake's OpenSSL features") + variant('ncurses', default=True, + description='Enables the build of the ncurses gui') + variant('openssl', default=True, + description="Enables CMake's OpenSSL features") variant('qt', default=False, description='Enables the build of cmake-gui') - variant('doc', default=False, description='Enables the generation of html and man page documentation') + variant('doc', default=False, + description='Enables the generation of html and man page docs') depends_on('ncurses', when='+ncurses') depends_on('openssl', when='+openssl') @@ -53,7 +57,8 @@ class Cmake(Package): def url_for_version(self, version): """Handle CMake's version-based custom URLs.""" - return 'https://cmake.org/files/v%s/cmake-%s.tar.gz' % (version.up_to(2), version) + return 'https://cmake.org/files/v%s/cmake-%s.tar.gz' % ( + version.up_to(2), version) def validate(self, spec): """ diff --git a/var/spack/repos/builtin/packages/cmocka/package.py b/var/spack/repos/builtin/packages/cmocka/package.py index aa2b3cc3bb..274b78379a 100644 --- a/var/spack/repos/builtin/packages/cmocka/package.py +++ b/var/spack/repos/builtin/packages/cmocka/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Cmocka(Package): """Unit-testing framework in pure C""" homepage = "https://cmocka.org/" @@ -36,7 +37,7 @@ class Cmocka(Package): def install(self, spec, prefix): with working_dir('spack-build', create=True): - cmake('..', *std_cmake_args) + cmake('..', *std_cmake_args) - make() - make("install") + make() + make("install") diff --git a/var/spack/repos/builtin/packages/cnmem/package.py b/var/spack/repos/builtin/packages/cnmem/package.py index f4c05f5b5f..0c62023952 100644 --- a/var/spack/repos/builtin/packages/cnmem/package.py +++ b/var/spack/repos/builtin/packages/cnmem/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Cnmem(Package): """CNMem mempool for CUDA devices""" homepage = "https://github.com/NVIDIA/cnmem" @@ -31,6 +32,6 @@ class Cnmem(Package): version('git', git='https://github.com/NVIDIA/cnmem.git', branch="master") def install(self, spec, prefix): - cmake('.',*std_cmake_args) - make() - make('install') + cmake('.', *std_cmake_args) + make() + make('install') diff --git a/var/spack/repos/builtin/packages/coreutils/package.py b/var/spack/repos/builtin/packages/coreutils/package.py index cb8f596b41..94cfa11341 100644 --- a/var/spack/repos/builtin/packages/coreutils/package.py +++ b/var/spack/repos/builtin/packages/coreutils/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Coreutils(Package): """The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. These are diff --git a/var/spack/repos/builtin/packages/cppcheck/package.py b/var/spack/repos/builtin/packages/cppcheck/package.py index 16f052ef2f..fd48fcb7e3 100644 --- a/var/spack/repos/builtin/packages/cppcheck/package.py +++ b/var/spack/repos/builtin/packages/cppcheck/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Cppcheck(Package): """A tool for static C/C++ code analysis.""" homepage = "http://cppcheck.sourceforge.net/" diff --git a/var/spack/repos/builtin/packages/cram/package.py b/var/spack/repos/builtin/packages/cram/package.py index 283bc5adea..bef26cdcbd 100644 --- a/var/spack/repos/builtin/packages/cram/package.py +++ b/var/spack/repos/builtin/packages/cram/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Cram(Package): """Cram runs many small MPI jobs inside one large MPI job.""" homepage = "https://github.com/llnl/cram" diff --git a/var/spack/repos/builtin/packages/cryptopp/package.py b/var/spack/repos/builtin/packages/cryptopp/package.py index 77895a7331..e9294a14a6 100644 --- a/var/spack/repos/builtin/packages/cryptopp/package.py +++ b/var/spack/repos/builtin/packages/cryptopp/package.py @@ -25,12 +25,15 @@ import glob from spack import * + class Cryptopp(Package): """Crypto++ is an open-source C++ library of cryptographic schemes. The - library supports a number of different cryptography algorithms, including - authenticated encryption schemes (GCM, CCM), hash functions (SHA-1, SHA2), - public-key encryption (RSA, DSA), and a few obsolete/historical encryption - algorithms (MD5, Panama).""" + library supports a number of different cryptography algorithms, + including authenticated encryption schemes (GCM, CCM), hash + functions (SHA-1, SHA2), public-key encryption (RSA, DSA), and a + few obsolete/historical encryption algorithms (MD5, Panama). + + """ homepage = "http://www.cryptopp.com" base_url = "http://www.cryptopp.com" diff --git a/var/spack/repos/builtin/packages/cscope/package.py b/var/spack/repos/builtin/packages/cscope/package.py index 88d522f486..f21226cce1 100644 --- a/var/spack/repos/builtin/packages/cscope/package.py +++ b/var/spack/repos/builtin/packages/cscope/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Cscope(Package): """Cscope is a developer's tool for browsing source code.""" homepage = "http://http://cscope.sourceforge.net/" diff --git a/var/spack/repos/builtin/packages/cuda/package.py b/var/spack/repos/builtin/packages/cuda/package.py index 96694670ad..558535bec6 100644 --- a/var/spack/repos/builtin/packages/cuda/package.py +++ b/var/spack/repos/builtin/packages/cuda/package.py @@ -26,22 +26,27 @@ from spack import * from glob import glob import os + class Cuda(Package): - """CUDA is a parallel computing platform and programming model invented by - NVIDIA. It enables dramatic increases in computing performance by harnessing - the power of the graphics processing unit (GPU). + """CUDA is a parallel computing platform and programming model invented + by NVIDIA. It enables dramatic increases in computing performance by + harnessing the power of the graphics processing unit (GPU). + + Note: NVIDIA does not provide a download URL for CUDA so you will + need to download it yourself. Go to + https://developer.nvidia.com/cuda-downloads and select your Operating + System, Architecture, Distribution, and Version. For the Installer + Type, select runfile and click Download. Spack will search your + current directory for this file. Alternatively, add this file to a + mirror so that Spack can find it. For instructions on how to set up a + mirror, see http://software.llnl.gov/spack/mirrors.html - Note: NVIDIA does not provide a download URL for CUDA so you will need to - download it yourself. Go to https://developer.nvidia.com/cuda-downloads - and select your Operating System, Architecture, Distribution, and Version. - For the Installer Type, select runfile and click Download. Spack will search - your current directory for this file. Alternatively, add this file to a - mirror so that Spack can find it. For instructions on how to set up a mirror, - see http://software.llnl.gov/spack/mirrors.html + Note: This package does not currently install the drivers necessary + to run CUDA. These will need to be installed manually. See: + http://docs.nvidia.com/cuda/cuda-getting-started-guide-for-linux for + details. - Note: This package does not currently install the drivers necessary to run - CUDA. These will need to be installed manually. See: - http://docs.nvidia.com/cuda/cuda-getting-started-guide-for-linux for details.""" + """ homepage = "http://www.nvidia.com/object/cuda_home_new.html" @@ -50,15 +55,15 @@ class Cuda(Package): version('6.5.14', '90b1b8f77313600cc294d9271741f4da', expand=False, url="file://%s/cuda_6.5.14_linux_64.run" % os.getcwd()) - def install(self, spec, prefix): runfile = glob(os.path.join(self.stage.path, 'cuda*.run'))[0] chmod = which('chmod') chmod('+x', runfile) runfile = which(runfile) - # Note: NVIDIA does not officially support many newer versions of compilers. - # For example, on CentOS 6, you must use GCC 4.4.7 or older. See: + # Note: NVIDIA does not officially support many newer versions of + # compilers. For example, on CentOS 6, you must use GCC 4.4.7 or + # older. See: # http://docs.nvidia.com/cuda/cuda-installation-guide-linux/#system-requirements # for details. @@ -68,4 +73,3 @@ class Cuda(Package): '--toolkit', # install CUDA Toolkit '--toolkitpath=%s' % prefix ) - diff --git a/var/spack/repos/builtin/packages/czmq/package.py b/var/spack/repos/builtin/packages/czmq/package.py index a251a94470..ef6374619b 100644 --- a/var/spack/repos/builtin/packages/czmq/package.py +++ b/var/spack/repos/builtin/packages/czmq/package.py @@ -25,12 +25,14 @@ from spack import * import os + class Czmq(Package): """ A C interface to the ZMQ library """ homepage = "http://czmq.zeromq.org" url = "https://github.com/zeromq/czmq/archive/v3.0.2.tar.gz" - version('3.0.2', '23e9885f7ee3ce88d99d0425f52e9be1', url='https://github.com/zeromq/czmq/archive/v3.0.2.tar.gz') + version('3.0.2', '23e9885f7ee3ce88d99d0425f52e9be1', + url='https://github.com/zeromq/czmq/archive/v3.0.2.tar.gz') depends_on('libtool', type='build') depends_on('automake', type='build') @@ -39,19 +41,21 @@ class Czmq(Package): depends_on('zeromq') def install(self, spec, prefix): - bash = which("bash") # Work around autogen.sh oddities + # bash = which("bash") # bash("./autogen.sh") mkdirp("config") autoreconf = which("autoreconf") autoreconf("--install", "--verbose", "--force", - "-I", "config", - "-I", os.path.join(spec['pkg-config'].prefix, "share", "aclocal"), - "-I", os.path.join(spec['automake'].prefix, "share", "aclocal"), - "-I", os.path.join(spec['libtool'].prefix, "share", "aclocal"), - ) + "-I", "config", + "-I", os.path.join(spec['pkg-config'].prefix, + "share", "aclocal"), + "-I", os.path.join(spec['automake'].prefix, + "share", "aclocal"), + "-I", os.path.join(spec['libtool'].prefix, + "share", "aclocal"), + ) configure("--prefix=%s" % prefix) make() make("install") - diff --git a/var/spack/repos/builtin/packages/dakota/package.py b/var/spack/repos/builtin/packages/dakota/package.py index d0d22d9728..e8f7d0889b 100644 --- a/var/spack/repos/builtin/packages/dakota/package.py +++ b/var/spack/repos/builtin/packages/dakota/package.py @@ -26,17 +26,22 @@ from spack import * class Dakota(Package): - """ - The Dakota toolkit provides a flexible, extensible interface between analysis codes and iterative systems - analysis methods. Dakota contains algorithms for: + """The Dakota toolkit provides a flexible, extensible interface between + analysis codes and iterative systems analysis methods. Dakota + contains algorithms for: - optimization with gradient and non gradient-based methods; - - uncertainty quantification with sampling, reliability, stochastic expansion, and epistemic methods; + - uncertainty quantification with sampling, reliability, stochastic + - expansion, and epistemic methods; - parameter estimation with nonlinear least squares methods; - - sensitivity/variance analysis with design of experiments and parameter study methods. + - sensitivity/variance analysis with design of experiments and + - parameter study methods. + + These capabilities may be used on their own or as components within + advanced strategies such as hybrid optimization, surrogate-based + optimization, mixed integer nonlinear programming, or optimization + under uncertainty. - These capabilities may be used on their own or as components within advanced strategies such as hybrid optimization, - surrogate-based optimization, mixed integer nonlinear programming, or optimization under uncertainty. """ homepage = 'https://dakota.sandia.gov/' @@ -45,8 +50,10 @@ class Dakota(Package): version('6.3', '05a58d209fae604af234c894c3f73f6d') - variant('debug', default=False, description='Builds a debug version of the libraries') - variant('shared', default=True, description='Enables the build of shared libraries') + variant('debug', default=False, + description='Builds a debug version of the libraries') + variant('shared', default=True, + description='Enables the build of shared libraries') variant('mpi', default=True, description='Activates MPI support') depends_on('blas') @@ -64,12 +71,17 @@ class Dakota(Package): options = [] options.extend(std_cmake_args) - options.extend(['-DCMAKE_BUILD_TYPE:STRING=%s' % ('Debug' if '+debug' in spec else 'Release'), - '-DBUILD_SHARED_LIBS:BOOL=%s' % ('ON' if '+shared' in spec else 'OFF')]) + options.extend([ + '-DCMAKE_BUILD_TYPE:STRING=%s' % ( + 'Debug' if '+debug' in spec else 'Release'), + '-DBUILD_SHARED_LIBS:BOOL=%s' % ( + 'ON' if '+shared' in spec else 'OFF')]) if '+mpi' in spec: - options.extend(['-DDAKOTA_HAVE_MPI:BOOL=ON', - '-DMPI_CXX_COMPILER:STRING=%s' % join_path(spec['mpi'].prefix.bin, 'mpicxx')]) + options.extend([ + '-DDAKOTA_HAVE_MPI:BOOL=ON', + '-DMPI_CXX_COMPILER:STRING=%s' % join_path( + spec['mpi'].prefix.bin, 'mpicxx')]) build_directory = join_path(self.stage.path, 'spack-build') source_directory = self.stage.source_path diff --git a/var/spack/repos/builtin/packages/damselfly/package.py b/var/spack/repos/builtin/packages/damselfly/package.py index 427997072c..a37728c92b 100644 --- a/var/spack/repos/builtin/packages/damselfly/package.py +++ b/var/spack/repos/builtin/packages/damselfly/package.py @@ -24,17 +24,19 @@ ############################################################################## from spack import * + class Damselfly(Package): """Damselfly is a model-based parallel network simulator.""" homepage = "https://github.com/llnl/damselfly" url = "https://github.com/llnl/damselfly" - version('1.0', '05cf7e2d8ece4408c0f2abb7ab63fd74c0d62895', git='https://github.com/llnl/damselfly.git', tag='v1.0') + version('1.0', '05cf7e2d8ece4408c0f2abb7ab63fd74c0d62895', + git='https://github.com/llnl/damselfly.git', tag='v1.0') depends_on('cmake', type='build') def install(self, spec, prefix): with working_dir('spack-build', create=True): - cmake('-DCMAKE_BUILD_TYPE=release', '..', *std_cmake_args) - make() - make('install') + cmake('-DCMAKE_BUILD_TYPE=release', '..', *std_cmake_args) + make() + make('install') diff --git a/var/spack/repos/builtin/packages/dbus/package.py b/var/spack/repos/builtin/packages/dbus/package.py index 130ba2ea1f..fdca68f53f 100644 --- a/var/spack/repos/builtin/packages/dbus/package.py +++ b/var/spack/repos/builtin/packages/dbus/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Dbus(Package): """D-Bus is a message bus system, a simple way for applications to talk to one another. D-Bus supplies both a system daemon (for diff --git a/var/spack/repos/builtin/packages/dealii/package.py b/var/spack/repos/builtin/packages/dealii/package.py index 18c0849f68..1411494c6f 100644 --- a/var/spack/repos/builtin/packages/dealii/package.py +++ b/var/spack/repos/builtin/packages/dealii/package.py @@ -40,18 +40,27 @@ class Dealii(Package): version('develop', git='https://github.com/dealii/dealii.git') variant('mpi', default=True, description='Compile with MPI') - variant('arpack', default=True, description='Compile with Arpack and PArpack (only with MPI)') - variant('doc', default=False, description='Compile with documentation') + variant('arpack', default=True, + description='Compile with Arpack and PArpack (only with MPI)') + variant('doc', default=False, + description='Compile with documentation') variant('gsl', default=True, description='Compile with GSL') - variant('hdf5', default=True, description='Compile with HDF5 (only with MPI)') + variant('hdf5', default=True, + description='Compile with HDF5 (only with MPI)') variant('metis', default=True, description='Compile with Metis') - variant('netcdf', default=True, description='Compile with Netcdf (only with MPI)') + variant('netcdf', default=True, + description='Compile with Netcdf (only with MPI)') variant('oce', default=True, description='Compile with OCE') - variant('p4est', default=True, description='Compile with P4est (only with MPI)') - variant('petsc', default=True, description='Compile with Petsc (only with MPI)') - variant('slepc', default=True, description='Compile with Slepc (only with Petsc and MPI)') - variant('trilinos', default=True, description='Compile with Trilinos (only with MPI)') - variant('python', default=True, description='Compile with Python bindings') + variant('p4est', default=True, + description='Compile with P4est (only with MPI)') + variant('petsc', default=True, + description='Compile with Petsc (only with MPI)') + variant('slepc', default=True, + description='Compile with Slepc (only with Petsc and MPI)') + variant('trilinos', default=True, + description='Compile with Trilinos (only with MPI)') + variant('python', default=True, + description='Compile with Python bindings') # required dependencies, light version depends_on("blas") @@ -59,13 +68,20 @@ class Dealii(Package): # https://github.com/dealii/dealii/issues/1591 # Require at least 1.59 # +python won't affect @:8.4.1 - depends_on("boost@1.59.0:+thread+system+serialization+iostreams", when='@:8.4.1~mpi') - depends_on("boost@1.59.0:+thread+system+serialization+iostreams+mpi", when='@:8.4.1+mpi') + depends_on("boost@1.59.0:+thread+system+serialization+iostreams", + when='@:8.4.1~mpi') + depends_on("boost@1.59.0:+thread+system+serialization+iostreams+mpi", + when='@:8.4.1+mpi') # since @8.5.0: (and @develop) python bindings are introduced: - depends_on("boost@1.59.0:+thread+system+serialization+iostreams", when='@8.5.0:~mpi~python') - depends_on("boost@1.59.0:+thread+system+serialization+iostreams+mpi", when='@8.5.0:+mpi~python') - depends_on("boost@1.59.0:+thread+system+serialization+iostreams+python", when='@8.5.0:~mpi+python') - depends_on("boost@1.59.0:+thread+system+serialization+iostreams+mpi+python", when='@8.5.0:+mpi+python') + depends_on("boost@1.59.0:+thread+system+serialization+iostreams", + when='@8.5.0:~mpi~python') + depends_on("boost@1.59.0:+thread+system+serialization+iostreams+mpi", + when='@8.5.0:+mpi~python') + depends_on("boost@1.59.0:+thread+system+serialization+iostreams+python", + when='@8.5.0:~mpi+python') + depends_on( + "boost@1.59.0:+thread+system+serialization+iostreams+mpi+python", + when='@8.5.0:+mpi+python') depends_on("bzip2") depends_on("cmake", type='build') depends_on("lapack") diff --git a/var/spack/repos/builtin/packages/dia/package.py b/var/spack/repos/builtin/packages/dia/package.py index 1685f0009f..94cd75656d 100644 --- a/var/spack/repos/builtin/packages/dia/package.py +++ b/var/spack/repos/builtin/packages/dia/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Dia(Package): """Dia is a program for drawing structured diagrams.""" homepage = 'https://wiki.gnome.org/Apps/Dia' @@ -34,7 +35,7 @@ class Dia(Package): depends_on('intltool', type='build') depends_on('gtkplus@2.6.0:') depends_on('cairo') - #depends_on('libart') # optional dependency, not yet supported by spack. + # depends_on('libart') # optional dependency, not yet supported by spack. depends_on('libpng') depends_on('libxslt') depends_on('python') diff --git a/var/spack/repos/builtin/packages/doxygen/package.py b/var/spack/repos/builtin/packages/doxygen/package.py index 267ba61756..f29110ac1d 100644 --- a/var/spack/repos/builtin/packages/doxygen/package.py +++ b/var/spack/repos/builtin/packages/doxygen/package.py @@ -24,8 +24,6 @@ ############################################################################## from spack import * -import sys - class Doxygen(Package): """Doxygen is the de facto standard tool for generating documentation @@ -41,7 +39,8 @@ class Doxygen(Package): version('1.8.10', '79767ccd986f12a0f949015efb5f058f') # graphviz appears to be a run-time optional dependency - variant('graphviz', default=True, description='Build with dot command support from Graphviz.') # NOQA: ignore=E501 + variant('graphviz', default=True, + description='Build with dot command support from Graphviz.') depends_on("cmake@2.8.12:", type='build') depends_on("flex", type='build') diff --git a/var/spack/repos/builtin/packages/dri2proto/package.py b/var/spack/repos/builtin/packages/dri2proto/package.py index 25ea783c0c..65b86714f1 100644 --- a/var/spack/repos/builtin/packages/dri2proto/package.py +++ b/var/spack/repos/builtin/packages/dri2proto/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Dri2proto(Package): """DRI2 Protocol Headers.""" homepage = "http://http://cgit.freedesktop.org/xorg/proto/dri2proto/" diff --git a/var/spack/repos/builtin/packages/dtcmp/package.py b/var/spack/repos/builtin/packages/dtcmp/package.py index b50b2ae3ae..e59e246d47 100644 --- a/var/spack/repos/builtin/packages/dtcmp/package.py +++ b/var/spack/repos/builtin/packages/dtcmp/package.py @@ -22,9 +22,9 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -import os from spack import * + class Dtcmp(Package): """The Datatype Comparison Library provides comparison operations and parallel sort algorithms for MPI applications.""" diff --git a/var/spack/repos/builtin/packages/dyninst/package.py b/var/spack/repos/builtin/packages/dyninst/package.py index efe4de4abf..90c83bdc3a 100644 --- a/var/spack/repos/builtin/packages/dyninst/package.py +++ b/var/spack/repos/builtin/packages/dyninst/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Dyninst(Package): """API for dynamic binary instrumentation. Modify programs while they are executing without recompiling, re-linking, or re-executing.""" @@ -55,16 +56,18 @@ class Dyninst(Package): '-DBoost_INCLUDE_DIR=%s' % spec['boost'].prefix.include, '-DBoost_LIBRARY_DIR=%s' % spec['boost'].prefix.lib, '-DBoost_NO_SYSTEM_PATHS=TRUE', - '-DLIBELF_INCLUDE_DIR=%s' % join_path(libelf.include, 'libelf'), - '-DLIBELF_LIBRARIES=%s' % join_path(libelf.lib, 'libelf.so'), + '-DLIBELF_INCLUDE_DIR=%s' % join_path( + libelf.include, 'libelf'), + '-DLIBELF_LIBRARIES=%s' % join_path( + libelf.lib, 'libelf.so'), '-DLIBDWARF_INCLUDE_DIR=%s' % libdwarf.include, - '-DLIBDWARF_LIBRARIES=%s' % join_path(libdwarf.lib, 'libdwarf.so'), + '-DLIBDWARF_LIBRARIES=%s' % join_path( + libdwarf.lib, 'libdwarf.so'), *std_cmake_args) make() make("install") - @when('@:8.1') def install(self, spec, prefix): configure("--prefix=" + prefix) diff --git a/var/spack/repos/builtin/packages/eigen/package.py b/var/spack/repos/builtin/packages/eigen/package.py index 97343f499b..36d6850c1a 100644 --- a/var/spack/repos/builtin/packages/eigen/package.py +++ b/var/spack/repos/builtin/packages/eigen/package.py @@ -22,7 +22,6 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## - from spack import * @@ -36,15 +35,19 @@ class Eigen(Package): homepage = 'http://eigen.tuxfamily.org/' url = 'http://bitbucket.org/eigen/eigen/get/3.2.7.tar.bz2' - version('3.2.7', 'cc1bacbad97558b97da6b77c9644f184', url='http://bitbucket.org/eigen/eigen/get/3.2.7.tar.bz2') + version('3.2.7', 'cc1bacbad97558b97da6b77c9644f184', + url='http://bitbucket.org/eigen/eigen/get/3.2.7.tar.bz2') - variant('debug', default=False, description='Builds the library in debug mode') + variant('debug', default=False, + description='Builds the library in debug mode') variant('metis', default=True, description='Enables metis backend') variant('scotch', default=True, description='Enables scotch backend') variant('fftw', default=True, description='Enables FFTW backend') - variant('suitesparse', default=True, description='Enables SuiteSparse support') - variant('mpfr', default=True, description='Enables support for multi-precisions floating points via mpfr') + variant('suitesparse', default=True, + description='Enables SuiteSparse support') + variant('mpfr', default=True, + description='Enables support for multi-precisions FP via mpfr') # TODO : dependency on googlehash, superlu, adolc missing depends_on('cmake', type='build') diff --git a/var/spack/repos/builtin/packages/elfutils/package.py b/var/spack/repos/builtin/packages/elfutils/package.py index ecb5759ddc..ef8c2433c9 100644 --- a/var/spack/repos/builtin/packages/elfutils/package.py +++ b/var/spack/repos/builtin/packages/elfutils/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Elfutils(Package): """elfutils is a collection of various binary tools such as eu-objdump, eu-readelf, and other utilities that allow you to @@ -47,4 +48,3 @@ class Elfutils(Package): configure('--prefix=%s' % prefix, '--enable-maintainer-mode') make() make("install") - diff --git a/var/spack/repos/builtin/packages/elpa/package.py b/var/spack/repos/builtin/packages/elpa/package.py index ae81422495..f28d63f6c3 100644 --- a/var/spack/repos/builtin/packages/elpa/package.py +++ b/var/spack/repos/builtin/packages/elpa/package.py @@ -34,7 +34,8 @@ class Elpa(Package): homepage = 'http://elpa.mpcdf.mpg.de/' url = 'http://elpa.mpcdf.mpg.de/elpa-2015.11.001.tar.gz' - version('2015.11.001', 'de0f35b7ee7c971fd0dca35c900b87e6', url='http://elpa.mpcdf.mpg.de/elpa-2015.11.001.tar.gz') + version('2015.11.001', 'de0f35b7ee7c971fd0dca35c900b87e6', + url='http://elpa.mpcdf.mpg.de/elpa-2015.11.001.tar.gz') variant('openmp', default=False, description='Activates OpenMP support') diff --git a/var/spack/repos/builtin/packages/emacs/package.py b/var/spack/repos/builtin/packages/emacs/package.py index a9ebd6d42f..94d42a3c9f 100644 --- a/var/spack/repos/builtin/packages/emacs/package.py +++ b/var/spack/repos/builtin/packages/emacs/package.py @@ -35,7 +35,8 @@ class Emacs(Package): version('24.5', 'd74b597503a68105e61b5b9f6d065b44') variant('X', default=True, description="Enable a X toolkit (GTK+)") - variant('gtkplus', default=False, description="Enable a GTK+ as X toolkit (this variant is ignored if ~X)") + variant('gtkplus', default=False, + description="Enable a GTK+ as X toolkit (ignored if ~X)") depends_on('ncurses') depends_on('libtiff', when='+X') diff --git a/var/spack/repos/builtin/packages/environment-modules/package.py b/var/spack/repos/builtin/packages/environment-modules/package.py index 5d5bb3be02..85594bab47 100644 --- a/var/spack/repos/builtin/packages/environment-modules/package.py +++ b/var/spack/repos/builtin/packages/environment-modules/package.py @@ -46,17 +46,18 @@ class EnvironmentModules(Package): "--without-tclx", "--with-tclx-ver=0.0", "--prefix=%s" % prefix, - "--with-tcl=%s" % join_path(tcl_spec.prefix, 'lib'), # It looks for tclConfig.sh - "--with-tcl-ver=%d.%d" % (tcl_spec.version.version[0], tcl_spec.version.version[1]), + # It looks for tclConfig.sh + "--with-tcl=%s" % join_path(tcl_spec.prefix, 'lib'), + "--with-tcl-ver=%d.%d" % (tcl_spec.version.version[ + 0], tcl_spec.version.version[1]), '--disable-debug', '--disable-dependency-tracking', '--disable-silent-rules', - '--disable-versioning', + '--disable-versioning', '--datarootdir=%s' % prefix.share, 'CPPFLAGS=%s' % ' '.join(CPPFLAGS) ] - configure(*config_args) make() make('install') diff --git a/var/spack/repos/builtin/packages/exodusii/package.py b/var/spack/repos/builtin/packages/exodusii/package.py index eb6c23afeb..15fe1e89a6 100644 --- a/var/spack/repos/builtin/packages/exodusii/package.py +++ b/var/spack/repos/builtin/packages/exodusii/package.py @@ -32,17 +32,22 @@ from spack import * # TODO: Create installation options for NetCDF that support larger page size # TODO: suggested by Exodus (see the repository "README" file). + class Exodusii(Package): - """Exodus II is a C++/Fortran library developed to store and retrieve data for - finite element analyses. It's used for preprocessing (problem definition), - postprocessing (results visualization), and data transfer between codes. - An Exodus II data file is a random access, machine independent, binary - file that is written and read via C, C++, or Fortran API routines.""" + """Exodus II is a C++/Fortran library developed to store and retrieve + data for finite element analyses. It's used for preprocessing + (problem definition), postprocessing (results visualization), and + data transfer between codes. An Exodus II data file is a random + access, machine independent, binary file that is written and read + via C, C++, or Fortran API routines. + + """ homepage = "https://github.com/gsjaardema/seacas" url = "https://github.com/gsjaardema/seacas/archive/master.zip" - version('2016-02-08', git='https://github.com/gsjaardema/seacas.git', commit='dcf3529') + version('2016-02-08', + git='https://github.com/gsjaardema/seacas.git', commit='dcf3529') depends_on('cmake@2.8.7:', type='build') depends_on('hdf5~shared~mpi') @@ -54,11 +59,14 @@ class Exodusii(Package): ff = FileFilter('cmake-exodus') ff.filter('CMAKE_INSTALL_PREFIX:PATH=${ACCESS}', - 'CMAKE_INSTALL_PREFIX:PATH=%s' % self.spec.prefix, string=True) + 'CMAKE_INSTALL_PREFIX:PATH=%s' % self.spec.prefix, + string=True) ff.filter('NetCDF_DIR:PATH=${TPL}', - 'NetCDF_DIR:PATH=%s' % self.spec['netcdf'].prefix, string=True) + 'NetCDF_DIR:PATH=%s' % self.spec['netcdf'].prefix, + string=True) ff.filter('HDF5_ROOT:PATH=${TPL}', - 'HDF5_ROOT:PATH=%s' % self.spec['hdf5'].prefix, string=True) + 'HDF5_ROOT:PATH=%s' % self.spec['hdf5'].prefix, + string=True) def install(self, spec, prefix): mkdirp('build') diff --git a/var/spack/repos/builtin/packages/expat/package.py b/var/spack/repos/builtin/packages/expat/package.py index 2a9ac123f3..7d0fdae1d4 100644 --- a/var/spack/repos/builtin/packages/expat/package.py +++ b/var/spack/repos/builtin/packages/expat/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Expat(Package): """<eXpat/> is an XML parser library written in C""" homepage = "http://expat.sourceforge.net/" @@ -39,4 +40,3 @@ class Expat(Package): cmake('..', *std_cmake_args) make() make('install') - diff --git a/var/spack/repos/builtin/packages/extrae/package.py b/var/spack/repos/builtin/packages/extrae/package.py index 84c410e4ba..72bfbe6326 100644 --- a/var/spack/repos/builtin/packages/extrae/package.py +++ b/var/spack/repos/builtin/packages/extrae/package.py @@ -25,7 +25,23 @@ from spack import * # typical working line with extrae 3.0.1 -# ./configure --prefix=/usr/local --with-mpi=/usr/lib64/mpi/gcc/openmpi --with-unwind=/usr/local --with-papi=/usr --with-dwarf=/usr --with-elf=/usr --with-dyninst=/usr --with-binutils=/usr --with-xml-prefix=/usr --enable-openmp --enable-nanos --enable-pthread --disable-parallel-merge LDFLAGS=-pthread +# ./configure +# --prefix=/usr/local +# --with-mpi=/usr/lib64/mpi/gcc/openmpi +# --with-unwind=/usr/local +# --with-papi=/usr +# --with-dwarf=/usr +# --with-elf=/usr +# --with-dyninst=/usr +# --with-binutils=/usr +# --with-xml-prefix=/usr +# --enable-openmp +# --enable-nanos +# --enable-pthread +# --disable-parallel-merge +# +# LDFLAGS=-pthread + class Extrae(Package): """Extrae is the package devoted to generate tracefiles which can @@ -55,16 +71,16 @@ class Extrae(Package): elif 'mvapich2' in spec: mpi = spec['mvapich2'] - configure("--prefix=%s" % prefix, - "--with-mpi=%s" % mpi.prefix, - "--with-unwind=%s" % spec['libunwind'].prefix, - "--with-dyninst=%s" % spec['dyninst'].prefix, - "--with-boost=%s" % spec['boost'].prefix, - "--with-dwarf=%s" % spec['libdwarf'].prefix, - "--with-papi=%s" % spec['papi'].prefix, - "--with-dyninst-headers=%s" % spec['dyninst'].prefix.include, - "--with-dyninst-libs=%s" % spec['dyninst'].prefix.lib) + configure("--prefix=%s" % prefix, + "--with-mpi=%s" % mpi.prefix, + "--with-unwind=%s" % spec['libunwind'].prefix, + "--with-dyninst=%s" % spec['dyninst'].prefix, + "--with-boost=%s" % spec['boost'].prefix, + "--with-dwarf=%s" % spec['libdwarf'].prefix, + "--with-papi=%s" % spec['papi'].prefix, + "--with-dyninst-headers=%s" % spec[ + 'dyninst'].prefix.include, + "--with-dyninst-libs=%s" % spec['dyninst'].prefix.lib) make() make("install", parallel=False) - diff --git a/var/spack/repos/builtin/packages/exuberant-ctags/package.py b/var/spack/repos/builtin/packages/exuberant-ctags/package.py index c49d0624f6..10be30ab8b 100644 --- a/var/spack/repos/builtin/packages/exuberant-ctags/package.py +++ b/var/spack/repos/builtin/packages/exuberant-ctags/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class ExuberantCtags(Package): """The canonical ctags generator""" homepage = "ctags.sourceforge.net" diff --git a/var/spack/repos/builtin/packages/fenics/package.py b/var/spack/repos/builtin/packages/fenics/package.py index 465ab651be..1762b15b66 100644 --- a/var/spack/repos/builtin/packages/fenics/package.py +++ b/var/spack/repos/builtin/packages/fenics/package.py @@ -44,13 +44,18 @@ class Fenics(Package): variant('petsc', default=True, description='Compile with PETSc') variant('slepc', default=True, description='Compile with SLEPc') variant('trilinos', default=True, description='Compile with Trilinos') - variant('suite-sparse', default=True, description='Compile with SuiteSparse solvers') + variant('suite-sparse', default=True, + description='Compile with SuiteSparse solvers') variant('vtk', default=False, description='Compile with VTK') variant('qt', default=False, description='Compile with QT') - variant('mpi', default=True, description='Enables the distributed memory support') - variant('openmp', default=True, description='Enables the shared memory support') - variant('shared', default=True, description='Enables the build of shared libraries') - variant('debug', default=False, description='Builds a debug version of the libraries') + variant('mpi', default=True, + description='Enables the distributed memory support') + variant('openmp', default=True, + description='Enables the shared memory support') + variant('shared', default=True, + description='Enables the build of shared libraries') + variant('debug', default=False, + description='Builds a debug version of the libraries') # not part of spack list for now # variant('petsc4py', default=True, description='Uses PETSc4py') @@ -109,7 +114,8 @@ class Fenics(Package): ] for release in releases: - version(release['version'], release['md5'], url=base_url.format(pkg='dolfin', version=release['version'])) + version(release['version'], release['md5'], url=base_url.format( + pkg='dolfin', version=release['version'])) for name, md5 in release['resources'].items(): resource(name=name, url=base_url.format(pkg=name, **release), diff --git a/var/spack/repos/builtin/packages/fftw/package.py b/var/spack/repos/builtin/packages/fftw/package.py index 434aeea616..570cd1bbdd 100644 --- a/var/spack/repos/builtin/packages/fftw/package.py +++ b/var/spack/repos/builtin/packages/fftw/package.py @@ -28,26 +28,36 @@ from spack import * class Fftw(Package): - """ - FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of - arbitrary input size, and of both real and complex data (as well as of even/odd data, i.e. the discrete cosine/sine - transforms or DCT/DST). We believe that FFTW, which is free software, should become the FFT library of choice for - most applications. + """FFTW is a C subroutine library for computing the discrete Fourier + transform (DFT) in one or more dimensions, of arbitrary input + size, and of both real and complex data (as well as of even/odd + data, i.e. the discrete cosine/sine transforms or DCT/DST). We + believe that FFTW, which is free software, should become the FFT + library of choice for most applications. + """ homepage = "http://www.fftw.org" url = "http://www.fftw.org/fftw-3.3.4.tar.gz" version('3.3.4', '2edab8c06b24feeb3b82bbb3ebf3e7b3') - variant('float', default=True, description='Produces a single precision version of the library') - variant('long_double', default=True, description='Produces a long double precision version of the library') - variant('quad', default=False, description='Produces a quad precision version of the library (works only with GCC and libquadmath)') + variant( + 'float', default=True, + description='Produces a single precision version of the library') + variant( + 'long_double', default=True, + description='Produces a long double precision version of the library') + variant( + 'quad', default=False, + description='Produces a quad precision version of the library ' + '(works only with GCC and libquadmath)') variant('openmp', default=False, description="Enable OpenMP support.") variant('mpi', default=False, description='Activate MPI support') depends_on('mpi', when='+mpi') - # TODO : add support for architecture specific optimizations as soon as targets are supported + # TODO : add support for architecture specific optimizations as soon as + # targets are supported def install(self, spec, prefix): options = ['--prefix=%s' % prefix, @@ -57,9 +67,9 @@ class Fftw(Package): if '+openmp' in spec: # Note: Apple's Clang does not support OpenMP. if spec.satisfies('%clang'): - ver = str(self.compiler.version) - if ver.endswith('-apple'): - raise InstallError("Apple's clang does not support OpenMP") + ver = str(self.compiler.version) + if ver.endswith('-apple'): + raise InstallError("Apple's clang does not support OpenMP") options.append('--enable-openmp') if not self.compiler.f77 or not self.compiler.fc: options.append("--disable-fortran") diff --git a/var/spack/repos/builtin/packages/fish/package.py b/var/spack/repos/builtin/packages/fish/package.py index 9d23a3d63d..0e85f410c1 100644 --- a/var/spack/repos/builtin/packages/fish/package.py +++ b/var/spack/repos/builtin/packages/fish/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Fish(Package): """fish is a smart and user-friendly command line shell for OS X, Linux, and the rest of the family. diff --git a/var/spack/repos/builtin/packages/fltk/package.py b/var/spack/repos/builtin/packages/fltk/package.py index f8ac5bc2a4..f29b64b02b 100644 --- a/var/spack/repos/builtin/packages/fltk/package.py +++ b/var/spack/repos/builtin/packages/fltk/package.py @@ -26,13 +26,16 @@ from spack import * class Fltk(Package): - """ - FLTK (pronounced "fulltick") is a cross-platform C++ GUI toolkit for UNIX/Linux (X11), Microsoft Windows, and - MacOS X. FLTK provides modern GUI functionality without the bloat and supports 3D graphics via OpenGL and its - built-in GLUT emulation. + """FLTK (pronounced "fulltick") is a cross-platform C++ GUI toolkit for + UNIX/Linux (X11), Microsoft Windows, and MacOS X. FLTK provides + modern GUI functionality without the bloat and supports 3D + graphics via OpenGL and its built-in GLUT emulation. + + FLTK is designed to be small and modular enough to be statically + linked, but works fine as a shared library. FLTK also includes an + excellent UI builder called FLUID that can be used to create + applications in minutes. - FLTK is designed to be small and modular enough to be statically linked, but works fine as a shared library. FLTK - also includes an excellent UI builder called FLUID that can be used to create applications in minutes. """ homepage = 'http://www.fltk.org/' url = 'http://fltk.org/pub/fltk/1.3.3/fltk-1.3.3-source.tar.gz' @@ -41,7 +44,8 @@ class Fltk(Package): patch('font.patch', when='@1.3.3') - variant('shared', default=True, description='Enables the build of shared libraries') + variant('shared', default=True, + description='Enables the build of shared libraries') def install(self, spec, prefix): options = ['--prefix=%s' % prefix, diff --git a/var/spack/repos/builtin/packages/flux/package.py b/var/spack/repos/builtin/packages/flux/package.py index dec339a6af..2fd2392b5e 100644 --- a/var/spack/repos/builtin/packages/flux/package.py +++ b/var/spack/repos/builtin/packages/flux/package.py @@ -25,13 +25,15 @@ from spack import * import os + class Flux(Package): """ A next-generation resource manager (pre-alpha) """ homepage = "https://github.com/flux-framework/flux-core" url = "https://github.com/flux-framework/flux-core" - version('master', branch='master', git='https://github.com/flux-framework/flux-core') + version('master', branch='master', + git='https://github.com/flux-framework/flux-core') # Also needs autotools, but should use the system version if available depends_on("zeromq@4.0.4:") @@ -52,12 +54,11 @@ class Flux(Package): # Bootstrap with autotools bash = which('bash') bash('./autogen.sh') - bash('./autogen.sh') #yes, twice, intentionally + bash('./autogen.sh') # yes, twice, intentionally # Fix asciidoc dependency on xml style sheets and whatnot - os.environ['XML_CATALOG_FILES'] = os.path.join(spec['docbook-xml'].prefix, - 'catalog.xml') + os.environ['XML_CATALOG_FILES'] = os.path.join( + spec['docbook-xml'].prefix, 'catalog.xml') # Configure, compile & install configure("--prefix=" + prefix) make("install", "V=1") - diff --git a/var/spack/repos/builtin/packages/foam-extend/package.py b/var/spack/repos/builtin/packages/foam-extend/package.py index 0ff5765895..6b3b87a110 100644 --- a/var/spack/repos/builtin/packages/foam-extend/package.py +++ b/var/spack/repos/builtin/packages/foam-extend/package.py @@ -16,12 +16,24 @@ class FoamExtend(Package): version('3.0', git='http://git.code.sf.net/p/foam-extend/foam-extend-3.0') variant('paraview', default=False, description='Enable ParaFOAM') - variant('scotch', default=True, description='Activate Scotch as a possible decomposition library') - variant('ptscotch', default=True, description='Activate PT-Scotch as a possible decomposition library') - variant('metis', default=True, description='Activate Metis as a possible decomposition library') - variant('parmetis', default=True, description='Activate Parmetis as a possible decomposition library') - variant('parmgridgen', default=True, description='Activate Parmgridgen support') - variant('source', default=True, description='Installs also the source folder') + variant( + 'scotch', default=True, + description='Activate Scotch as a possible decomposition library') + variant( + 'ptscotch', default=True, + description='Activate PT-Scotch as a possible decomposition library') + variant( + 'metis', default=True, + description='Activate Metis as a possible decomposition library') + variant( + 'parmetis', default=True, + description='Activate Parmetis as a possible decomposition library') + variant( + 'parmgridgen', default=True, + description='Activate Parmgridgen support') + variant( + 'source', default=True, + description='Installs also the source folder') supported_compilers = {'clang': 'Clang', 'gcc': 'Gcc', 'intel': 'Icc'} @@ -80,7 +92,7 @@ class FoamExtend(Package): filter_file( r'-lMGridGen', r'-lmgrid', - 'src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options') # NOQA: ignore=501 + 'src/fvAgglomerationMethods/MGridGenGamgAgglomeration/Make/options') # noqa # Get the wmake arch and compiler (arch, foam_compiler) = self.set_arch() diff --git a/var/spack/repos/builtin/packages/fontconfig/package.py b/var/spack/repos/builtin/packages/fontconfig/package.py index 76e9d8cb3f..0d7e47f228 100644 --- a/var/spack/repos/builtin/packages/fontconfig/package.py +++ b/var/spack/repos/builtin/packages/fontconfig/package.py @@ -24,12 +24,13 @@ ############################################################################## from spack import * + class Fontconfig(Package): """Fontconfig customizing font access""" homepage = "http://www.freedesktop.org/wiki/Software/fontconfig/" url = "http://www.freedesktop.org/software/fontconfig/release/fontconfig-2.11.1.tar.gz" - version('2.11.1' , 'e75e303b4f7756c2b16203a57ac87eba') + version('2.11.1', 'e75e303b4f7756c2b16203a57ac87eba') depends_on('freetype') depends_on('libxml2') diff --git a/var/spack/repos/builtin/packages/gasnet/package.py b/var/spack/repos/builtin/packages/gasnet/package.py index b3bd6c25f2..12ecd9fd6f 100644 --- a/var/spack/repos/builtin/packages/gasnet/package.py +++ b/var/spack/repos/builtin/packages/gasnet/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Gasnet(Package): """GASNet is a language-independent, low-level networking layer that provides network-independent, high-performance communication @@ -36,24 +37,24 @@ class Gasnet(Package): version('1.24.0', 'c8afdf48381e8b5a7340bdb32ca0f41a') - def install(self, spec, prefix): # TODO: don't use paths with @ in them. change_sed_delimiter('@', ';', 'configure') - configure("--prefix=%s" % prefix, - # TODO: factor IB suport out into architecture description. - "--enable-ibv", - "--enable-udp", - "--disable-mpi", - "--enable-par", - "--enable-mpi-compat", - "--enable-segment-fast", - "--disable-aligned-segments", - # TODO: make an option so that Legion can request builds with/without this. - # See the Legion webpage for details on when to/not to use. - "--disable-pshm", - "--with-segment-mmap-max=64MB") + configure( + "--prefix=%s" % prefix, + # TODO: factor IB suport out into architecture description. + "--enable-ibv", + "--enable-udp", + "--disable-mpi", + "--enable-par", + "--enable-mpi-compat", + "--enable-segment-fast", + "--disable-aligned-segments", + # TODO: make option so Legion can request builds with/without this. + # See the Legion webpage for details on when to/not to use. + "--disable-pshm", + "--with-segment-mmap-max=64MB") make() make("install") diff --git a/var/spack/repos/builtin/packages/gdal/package.py b/var/spack/repos/builtin/packages/gdal/package.py index 9ed83bc3be..4fdfafc992 100644 --- a/var/spack/repos/builtin/packages/gdal/package.py +++ b/var/spack/repos/builtin/packages/gdal/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Gdal(Package): """ GDAL is a translator library for raster and vector geospatial diff --git a/var/spack/repos/builtin/packages/gdb/package.py b/var/spack/repos/builtin/packages/gdb/package.py index 78ad4b307d..9145009fa4 100644 --- a/var/spack/repos/builtin/packages/gdb/package.py +++ b/var/spack/repos/builtin/packages/gdb/package.py @@ -27,9 +27,10 @@ from spack import * class Gdb(Package): - """ - GDB, the GNU Project debugger, allows you to see what is going on `inside' another program while it executes - -- or what another program was doing at the moment it crashed. + """GDB, the GNU Project debugger, allows you to see what is going on + `inside' another program while it executes -- or what another + program was doing at the moment it crashed. + """ homepage = "https://www.gnu.org/software/gdb" url = "http://ftp.gnu.org/gnu/gdb/gdb-7.10.tar.gz" diff --git a/var/spack/repos/builtin/packages/gdk-pixbuf/package.py b/var/spack/repos/builtin/packages/gdk-pixbuf/package.py index daf43f3256..d7a0200395 100644 --- a/var/spack/repos/builtin/packages/gdk-pixbuf/package.py +++ b/var/spack/repos/builtin/packages/gdk-pixbuf/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class GdkPixbuf(Package): """The Gdk Pixbuf is a toolkit for image loading and pixel buffer manipulation. It is used by GTK+ 2 and GTK+ 3 to load and diff --git a/var/spack/repos/builtin/packages/geos/package.py b/var/spack/repos/builtin/packages/geos/package.py index 88438b0a99..324186cfbc 100644 --- a/var/spack/repos/builtin/packages/geos/package.py +++ b/var/spack/repos/builtin/packages/geos/package.py @@ -23,7 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os + class Geos(Package): """GEOS (Geometry Engine - Open Source) is a C++ port of the Java diff --git a/var/spack/repos/builtin/packages/gflags/package.py b/var/spack/repos/builtin/packages/gflags/package.py index 47bbf369ef..7e04c9b682 100644 --- a/var/spack/repos/builtin/packages/gflags/package.py +++ b/var/spack/repos/builtin/packages/gflags/package.py @@ -22,9 +22,9 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -import os from spack import * + class Gflags(Package): """The gflags package contains a C++ library that implements commandline flags processing. It includes built-in support for diff --git a/var/spack/repos/builtin/packages/gl2ps/package.py b/var/spack/repos/builtin/packages/gl2ps/package.py index 25172bd544..d5e7b00027 100644 --- a/var/spack/repos/builtin/packages/gl2ps/package.py +++ b/var/spack/repos/builtin/packages/gl2ps/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Gl2ps(Package): """GL2PS is a C library providing high quality vector output for any OpenGL application.""" diff --git a/var/spack/repos/builtin/packages/glm/package.py b/var/spack/repos/builtin/packages/glm/package.py index 442c1cdf40..c565b3cae7 100644 --- a/var/spack/repos/builtin/packages/glm/package.py +++ b/var/spack/repos/builtin/packages/glm/package.py @@ -26,9 +26,10 @@ from spack import * class Glm(Package): - """ - OpenGL Mathematics (GLM) is a header only C++ mathematics library for graphics software based on - the OpenGL Shading Language (GLSL) specification. + """OpenGL Mathematics (GLM) is a header only C++ mathematics library for + graphics software based on the OpenGL Shading Language (GLSL) + specification. + """ homepage = "https://github.com/g-truc/glm" diff --git a/var/spack/repos/builtin/packages/glog/package.py b/var/spack/repos/builtin/packages/glog/package.py index 03ee092429..14f042732b 100644 --- a/var/spack/repos/builtin/packages/glog/package.py +++ b/var/spack/repos/builtin/packages/glog/package.py @@ -22,9 +22,9 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -import os from spack import * + class Glog(Package): """C++ implementation of the Google logging module.""" diff --git a/var/spack/repos/builtin/packages/glpk/package.py b/var/spack/repos/builtin/packages/glpk/package.py index 2ab3c38150..1b52643e59 100644 --- a/var/spack/repos/builtin/packages/glpk/package.py +++ b/var/spack/repos/builtin/packages/glpk/package.py @@ -22,22 +22,23 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## - from spack import * class Glpk(Package): - """ - The GLPK (GNU Linear Programming Kit) package is intended for solving large-scale linear programming (LP), mixed - integer programming (MIP), and other related problems. It is a set of routines written in ANSI C and organized in - the form of a callable library + """The GLPK (GNU Linear Programming Kit) package is intended for solving + large-scale linear programming (LP), mixed integer programming + (MIP), and other related problems. It is a set of routines written + in ANSI C and organized in the form of a callable library + """ homepage = "https://www.gnu.org/software/glpk" url = "http://ftp.gnu.org/gnu/glpk/glpk-4.57.tar.gz" version('4.57', '237531a54f73155842f8defe51aedb0f') - variant('gmp', default=False, description='Activates support for GMP library') + variant('gmp', default=False, + description='Activates support for GMP library') depends_on('gmp', when='+gmp') diff --git a/var/spack/repos/builtin/packages/gmsh/package.py b/var/spack/repos/builtin/packages/gmsh/package.py index fe26cb3bf2..72f490e2f4 100644 --- a/var/spack/repos/builtin/packages/gmsh/package.py +++ b/var/spack/repos/builtin/packages/gmsh/package.py @@ -41,15 +41,21 @@ class Gmsh(Package): version('2.12.0', '7fbd2ec8071e79725266e72744d21e902d4fe6fa9e7c52340ad5f4be5c159d09') version('2.11.0', 'f15b6e7ac9ca649c9a74440e1259d0db') - variant('shared', default=True, description='Enables the build of shared libraries') - variant('debug', default=False, description='Builds the library in debug mode') - variant('mpi', default=False, description='Builds MPI support for parser and solver') - variant('fltk', default=False, description='Enables the build of the FLTK GUI') + variant('shared', default=True, + description='Enables the build of shared libraries') + variant('debug', default=False, + description='Builds the library in debug mode') + variant('mpi', default=False, + description='Builds MPI support for parser and solver') + variant('fltk', default=False, + description='Enables the build of the FLTK GUI') variant('hdf5', default=False, description='Enables HDF5 support') - variant('compression', default=True, description='Enables IO compression through zlib') + variant('compression', default=True, + description='Enables IO compression through zlib') variant('oce', default=False, description='Build with OCE') variant('petsc', default=False, description='Build with PETSc') - variant('slepc', default=False, description='Build with SLEPc (only when PETSc is enabled)') + variant('slepc', default=False, + description='Build with SLEPc (only when PETSc is enabled)') depends_on('blas') depends_on('lapack') diff --git a/var/spack/repos/builtin/packages/gnu-prolog/package.py b/var/spack/repos/builtin/packages/gnu-prolog/package.py index f497ed3001..1e0487c654 100644 --- a/var/spack/repos/builtin/packages/gnu-prolog/package.py +++ b/var/spack/repos/builtin/packages/gnu-prolog/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class GnuProlog(Package): """A free Prolog compiler with constraint solving over finite domains.""" homepage = "http://www.gprolog.org/" diff --git a/var/spack/repos/builtin/packages/gnuplot/package.py b/var/spack/repos/builtin/packages/gnuplot/package.py index a76677e066..600b6d285f 100644 --- a/var/spack/repos/builtin/packages/gnuplot/package.py +++ b/var/spack/repos/builtin/packages/gnuplot/package.py @@ -27,13 +27,18 @@ from spack import * import os + class Gnuplot(Package): - """ - Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other - platforms. The source code is copyrighted but freely distributed (i.e., you don't have to pay for it). It was - originally created to allow scientists and students to visualize mathematical functions and data interactively, - but has grown to support many non-interactive uses such as web scripting. It is also used as a plotting engine by - third-party applications like Octave. Gnuplot has been supported and under active development since 1986 + """Gnuplot is a portable command-line driven graphing utility for Linux, + OS/2, MS Windows, OSX, VMS, and many other platforms. The source + code is copyrighted but freely distributed (i.e., you don't have + to pay for it). It was originally created to allow scientists and + students to visualize mathematical functions and data + interactively, but has grown to support many non-interactive uses + such as web scripting. It is also used as a plotting engine by + third-party applications like Octave. Gnuplot has been supported + and under active development since 1986 + """ homepage = "http://www.gnuplot.info" url = "http://downloads.sourceforge.net/project/gnuplot/gnuplot/5.0.1/gnuplot-5.0.1.tar.gz" diff --git a/var/spack/repos/builtin/packages/gnutls/package.py b/var/spack/repos/builtin/packages/gnutls/package.py index 71b571bc88..5f7b0daf9b 100644 --- a/var/spack/repos/builtin/packages/gnutls/package.py +++ b/var/spack/repos/builtin/packages/gnutls/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Gnutls(Package): """GnuTLS is a secure communications library implementing the SSL, TLS and DTLS protocols and technologies around them. It diff --git a/var/spack/repos/builtin/packages/googletest/package.py b/var/spack/repos/builtin/packages/googletest/package.py index 1dc74fbcf4..6f3cafec06 100644 --- a/var/spack/repos/builtin/packages/googletest/package.py +++ b/var/spack/repos/builtin/packages/googletest/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Googletest(Package): """Google test framework for C++. Also called gtest.""" homepage = "https://github.com/google/googletest" @@ -40,9 +41,8 @@ class Googletest(Package): # Google Test doesn't have a make install # We have to do our own install here. - install_tree('include', prefix.include) + install_tree('include', prefix.include) mkdirp(prefix.lib) - install('./libgtest.a', '%s' % prefix.lib) - install('./libgtest_main.a', '%s' % prefix.lib) - + install('./libgtest.a', '%s' % prefix.lib) + install('./libgtest_main.a', '%s' % prefix.lib) diff --git a/var/spack/repos/builtin/packages/gperf/package.py b/var/spack/repos/builtin/packages/gperf/package.py index af176afcf6..0e54d0e037 100644 --- a/var/spack/repos/builtin/packages/gperf/package.py +++ b/var/spack/repos/builtin/packages/gperf/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Gperf(Package): """GNU gperf is a perfect hash function generator. For a given list of strings, it produces a hash function and hash table, in diff --git a/var/spack/repos/builtin/packages/gperftools/package.py b/var/spack/repos/builtin/packages/gperftools/package.py index 1f17ab71a4..c6ca6c8057 100644 --- a/var/spack/repos/builtin/packages/gperftools/package.py +++ b/var/spack/repos/builtin/packages/gperftools/package.py @@ -24,14 +24,20 @@ ############################################################################## from spack import * + class Gperftools(Package): - """Google's fast malloc/free implementation, especially for multi-threaded applications. - Contains tcmalloc, heap-checker, heap-profiler, and cpu-profiler.""" + """Google's fast malloc/free implementation, especially for + multi-threaded applications. Contains tcmalloc, heap-checker, + heap-profiler, and cpu-profiler. + + """ homepage = "https://code.google.com/p/gperftools" url = "https://googledrive.com/host/0B6NtGsLhIcf7MWxMMF9JdTN3UVk/gperftools-2.3.tar.gz" - version('2.4', '2171cea3bbe053036fb5d5d25176a160', url="https://github.com/gperftools/gperftools/releases/download/gperftools-2.4/gperftools-2.4.tar.gz") - version('2.3', 'f54dd119f0e46ac1f13264f8d97adf90', url="https://googledrive.com/host/0B6NtGsLhIcf7MWxMMF9JdTN3UVk/gperftools-2.3.tar.gz") + version('2.4', '2171cea3bbe053036fb5d5d25176a160', + url="https://github.com/gperftools/gperftools/releases/download/gperftools-2.4/gperftools-2.4.tar.gz") + version('2.3', 'f54dd119f0e46ac1f13264f8d97adf90', + url="https://googledrive.com/host/0B6NtGsLhIcf7MWxMMF9JdTN3UVk/gperftools-2.3.tar.gz") depends_on("libunwind") diff --git a/var/spack/repos/builtin/packages/graphlib/package.py b/var/spack/repos/builtin/packages/graphlib/package.py index 087a322acc..0c3cd9b649 100644 --- a/var/spack/repos/builtin/packages/graphlib/package.py +++ b/var/spack/repos/builtin/packages/graphlib/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Graphlib(Package): """Library to create, manipulate, and export graphs Graphlib.""" homepage = "http://https://github.com/lee218llnl/graphlib" diff --git a/var/spack/repos/builtin/packages/gsl/package.py b/var/spack/repos/builtin/packages/gsl/package.py index c1695a6f02..574d3b9402 100644 --- a/var/spack/repos/builtin/packages/gsl/package.py +++ b/var/spack/repos/builtin/packages/gsl/package.py @@ -27,17 +27,19 @@ from spack import * class Gsl(Package): - """ - The GNU Scientific Library (GSL) is a numerical library for C and C++ programmers. It is free software under the - GNU General Public License. The library provides a wide range of mathematical routines such as random number - generators, special functions and least-squares fitting. There are over 1000 functions in total with an extensive - test suite. + """The GNU Scientific Library (GSL) is a numerical library for C and C++ + programmers. It is free software under the GNU General Public + License. The library provides a wide range of mathematical + routines such as random number generators, special functions and + least-squares fitting. There are over 1000 functions in total with + an extensive test suite. + """ homepage = "http://www.gnu.org/software/gsl" url = "http://mirror.switch.ch/ftp/mirror/gnu/gsl/gsl-2.1.tar.gz" - version('2.1' , 'd8f70abafd3e9f0bae03c52d1f4e8de5') - version('2.0' , 'ae44cdfed78ece40e73411b63a78c375') + version('2.1', 'd8f70abafd3e9f0bae03c52d1f4e8de5') + version('2.0', 'ae44cdfed78ece40e73411b63a78c375') version('1.16', 'e49a664db13d81c968415cd53f62bc8b') def install(self, spec, prefix): diff --git a/var/spack/repos/builtin/packages/gtkplus/package.py b/var/spack/repos/builtin/packages/gtkplus/package.py index c135e89f78..c85bbe4094 100644 --- a/var/spack/repos/builtin/packages/gtkplus/package.py +++ b/var/spack/repos/builtin/packages/gtkplus/package.py @@ -24,12 +24,15 @@ ############################################################################## from spack import * + class Gtkplus(Package): - """The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.""" + """The GTK+ 2 package contains libraries used for creating graphical user + interfaces for applications.""" homepage = "http://www.gtk.org" - version('2.24.25', '612350704dd3aacb95355a4981930c6f', - url="http://ftp.gnome.org/pub/gnome/sources/gtk+/2.24/gtk+-2.24.25.tar.xz") + version( + '2.24.25', '612350704dd3aacb95355a4981930c6f', + url="http://ftp.gnome.org/pub/gnome/sources/gtk+/2.24/gtk+-2.24.25.tar.xz") depends_on("atk") depends_on("gdk-pixbuf") diff --git a/var/spack/repos/builtin/packages/hdf/package.py b/var/spack/repos/builtin/packages/hdf/package.py index 7ad4df2fde..aafb345be6 100644 --- a/var/spack/repos/builtin/packages/hdf/package.py +++ b/var/spack/repos/builtin/packages/hdf/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Hdf(Package): """HDF4 (also known as HDF) is a library and multi-object file format for storing and managing data between machines.""" @@ -41,10 +42,9 @@ class Hdf(Package): depends_on("szip", when='+szip') depends_on("zlib") - def url_for_version(self, version): - return "https://www.hdfgroup.org/ftp/HDF/releases/HDF" + str(version) + "/src/hdf-" + str(version) + ".tar.gz" - + return "https://www.hdfgroup.org/ftp/HDF/releases/HDF" + str( + version) + "/src/hdf-" + str(version) + ".tar.gz" def install(self, spec, prefix): config_args = [ @@ -52,9 +52,9 @@ class Hdf(Package): '--prefix=%s' % prefix, '--with-jpeg=%s' % spec['jpeg'].prefix, '--with-zlib=%s' % spec['zlib'].prefix, - '--disable-netcdf', # must be disabled to build NetCDF with HDF4 support + '--disable-netcdf', # must be disabled to build NetCDF with HDF4 '--enable-fortran', - '--disable-shared', # fortran and shared libraries are not compatible + '--disable-shared', # fortran and shared libs are not compatible '--enable-static', '--enable-production' ] diff --git a/var/spack/repos/builtin/packages/hdf5-blosc/package.py b/var/spack/repos/builtin/packages/hdf5-blosc/package.py index 28b65711b0..89c20f3998 100644 --- a/var/spack/repos/builtin/packages/hdf5-blosc/package.py +++ b/var/spack/repos/builtin/packages/hdf5-blosc/package.py @@ -29,6 +29,7 @@ import sys from spack import * + def _install_shlib(name, src, dst): """Install a shared library from directory src to directory dst""" if sys.platform == "darwin": @@ -44,6 +45,7 @@ def _install_shlib(name, src, dst): os.symlink(shlib000, join_path(dst, shlib0)) os.symlink(shlib0, join_path(dst, shlib)) + class Hdf5Blosc(Package): """Blosc filter for HDF5""" homepage = "https://github.com/Blosc/hdf5-blosc" @@ -60,18 +62,21 @@ class Hdf5Blosc(Package): def install(self, spec, prefix): # The included cmake recipe doesn"t work for Darwin # cmake(".", *std_cmake_args) - # + # # make() # make("install") # if sys.platform == "darwin": # fix_darwin_install_name(prefix.lib) libtool = Executable(join_path(spec["libtool"].prefix.bin, "libtool")) - if "+mpi" in spec["hdf5"]: - cc = "mpicc" - else: - cc = "cc" - shlibext = "so" if sys.platform!="darwin" else "dylib" + + # TODO: these vars are not used. + # if "+mpi" in spec["hdf5"]: + # cc = "mpicc" # noqa + # else: + # cc = "cc" # noqa + # shlibext = "so" if sys.platform != "darwin" else "dylib" # noqa + mkdirp(prefix.include) mkdirp(prefix.lib) @@ -118,7 +123,7 @@ class Hdf5Blosc(Package): #include <stdio.h> #include <stdlib.h> -#define FILTER_BLOSC 32001 /* Blosc filter ID registered with the HDF group */ +#define FILTER_BLOSC 32001 /* Blosc filter ID registered with the HDF group */ int main(int argc, char **argv) { herr_t herr; @@ -184,13 +189,13 @@ Done. if not success: print "Produced output does not match expected output." print "Expected output:" - print "-"*80 + print "-" * 80 print expected - print "-"*80 + print "-" * 80 print "Produced output:" - print "-"*80 + print "-" * 80 print output - print "-"*80 + print "-" * 80 print "Environment:" env = which("env") env() diff --git a/var/spack/repos/builtin/packages/hdf5/package.py b/var/spack/repos/builtin/packages/hdf5/package.py index d169940c86..aedaf18218 100644 --- a/var/spack/repos/builtin/packages/hdf5/package.py +++ b/var/spack/repos/builtin/packages/hdf5/package.py @@ -44,15 +44,18 @@ class Hdf5(Package): version('1.8.15', '03cccb5b33dbe975fdcd8ae9dc021f24') version('1.8.13', 'c03426e9e77d7766944654280b467289') - variant('debug', default=False, description='Builds a debug version of the library') - variant('shared', default=True, description='Builds a shared version of the library') + variant('debug', default=False, + description='Builds a debug version of the library') + variant('shared', default=True, + description='Builds a shared version of the library') variant('cxx', default=True, description='Enable C++ support') variant('fortran', default=True, description='Enable Fortran support') variant('mpi', default=False, description='Enable MPI support') variant('szip', default=False, description='Enable szip support') - variant('threadsafe', default=False, description='Enable thread-safe capabilities') + variant('threadsafe', default=False, + description='Enable thread-safe capabilities') depends_on("mpi", when='+mpi') depends_on("szip", when='+szip') diff --git a/var/spack/repos/builtin/packages/hoomd-blue/package.py b/var/spack/repos/builtin/packages/hoomd-blue/package.py index 060cd0b713..79e99e7b89 100644 --- a/var/spack/repos/builtin/packages/hoomd-blue/package.py +++ b/var/spack/repos/builtin/packages/hoomd-blue/package.py @@ -25,6 +25,7 @@ from spack import * import os + class HoomdBlue(Package): """HOOMD-blue is a general-purpose particle simulation toolkit. It scales from a single CPU core to thousands of GPUs. @@ -56,7 +57,7 @@ class HoomdBlue(Package): cmake_args = [ '-DPYTHON_EXECUTABLE=%s/python' % spec['python'].prefix.bin, - '-DBOOST_ROOT=%s' % spec['boost' ].prefix + '-DBOOST_ROOT=%s' % spec['boost'].prefix ] # MPI support @@ -73,9 +74,9 @@ class HoomdBlue(Package): cmake_args.append('-DENABLE_CUDA=OFF') # CUDA-aware MPI library support - #if '+cuda' in spec and '+mpi' in spec: + # if '+cuda' in spec and '+mpi' in spec: # cmake_args.append('-DENABLE_MPI_CUDA=ON') - #else: + # else: # cmake_args.append('-DENABLE_MPI_CUDA=OFF') # There may be a bug in the MPI-CUDA code. See: diff --git a/var/spack/repos/builtin/packages/hpx5/package.py b/var/spack/repos/builtin/packages/hpx5/package.py index cd0c0b7a7b..686e959719 100644 --- a/var/spack/repos/builtin/packages/hpx5/package.py +++ b/var/spack/repos/builtin/packages/hpx5/package.py @@ -25,6 +25,7 @@ from spack import * import os + class Hpx5(Package): """The HPX-5 Runtime System. HPX-5 (High Performance ParalleX) is an open source, portable, performance-oriented runtime developed at diff --git a/var/spack/repos/builtin/packages/hwloc/package.py b/var/spack/repos/builtin/packages/hwloc/package.py index ee0168c38e..c163628840 100644 --- a/var/spack/repos/builtin/packages/hwloc/package.py +++ b/var/spack/repos/builtin/packages/hwloc/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Hwloc(Package): """The Portable Hardware Locality (hwloc) software package provides a portable abstraction (across OS, versions, diff --git a/var/spack/repos/builtin/packages/hydra/package.py b/var/spack/repos/builtin/packages/hydra/package.py index 3d56056022..eee346ba49 100644 --- a/var/spack/repos/builtin/packages/hydra/package.py +++ b/var/spack/repos/builtin/packages/hydra/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Hydra(Package): """Hydra is a process management system for starting parallel jobs. Hydra is designed to natively work with existing launcher daemons @@ -37,7 +38,6 @@ class Hydra(Package): version('3.2', '4d670916695bf7e3a869cc336a881b39') - def install(self, spec, prefix): configure('--prefix=%s' % prefix) diff --git a/var/spack/repos/builtin/packages/hypre/package.py b/var/spack/repos/builtin/packages/hypre/package.py index b339e068bf..fdc236dcf4 100644 --- a/var/spack/repos/builtin/packages/hypre/package.py +++ b/var/spack/repos/builtin/packages/hypre/package.py @@ -39,9 +39,11 @@ class Hypre(Package): version('2.10.0b', '768be38793a35bb5d055905b271f5b8e') # hypre does not know how to build shared libraries on Darwin - variant('shared', default=(sys.platform != 'darwin'), description="Build shared library version (disables static library)") + variant('shared', default=(sys.platform != 'darwin'), + description="Build shared library (disables static library)") # SuperluDist have conflicting headers with those in Hypre - variant('internal-superlu', default=True, description="Use internal Superlu routines") + variant('internal-superlu', default=True, + description="Use internal Superlu routines") depends_on("mpi") depends_on("blas") diff --git a/var/spack/repos/builtin/packages/ibmisc/package.py b/var/spack/repos/builtin/packages/ibmisc/package.py index ed1e6c6cbf..8e83058e94 100644 --- a/var/spack/repos/builtin/packages/ibmisc/package.py +++ b/var/spack/repos/builtin/packages/ibmisc/package.py @@ -1,5 +1,6 @@ from spack import * + class Ibmisc(CMakePackage): """Misc. reusable utilities used by IceBin.""" @@ -8,14 +9,22 @@ class Ibmisc(CMakePackage): version('0.1.0', '12f2a32432a11db48e00217df18e59fa') - variant('everytrace', default=False, description='Report errors through Everytrace') - variant('proj', default=True, description='Compile utilities for PROJ.4 library') - variant('blitz', default=True, description='Compile utilities for Blitz library') - variant('netcdf', default=True, description='Compile utilities for NetCDF library') - variant('boost', default=True, description='Compile utilities for Boost library') - variant('udunits2', default=True, description='Compile utilities for UDUNITS2 library') - variant('googletest', default=True, description='Compile utilities for Google Test library') - variant('python', default=True, description='Compile utilities for use with Python/Cython') + variant('everytrace', default=False, + description='Report errors through Everytrace') + variant('proj', default=True, + description='Compile utilities for PROJ.4 library') + variant('blitz', default=True, + description='Compile utilities for Blitz library') + variant('netcdf', default=True, + description='Compile utilities for NetCDF library') + variant('boost', default=True, + description='Compile utilities for Boost library') + variant('udunits2', default=True, + description='Compile utilities for UDUNITS2 library') + variant('googletest', default=True, + description='Compile utilities for Google Test library') + variant('python', default=True, + description='Compile utilities for use with Python/Cython') extends('python') diff --git a/var/spack/repos/builtin/packages/icu/package.py b/var/spack/repos/builtin/packages/icu/package.py index c7cabb5d95..b8d366b905 100644 --- a/var/spack/repos/builtin/packages/icu/package.py +++ b/var/spack/repos/builtin/packages/icu/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Icu(Package): """The International Components for Unicode (ICU) package is a mature, widely used set of C/C++ libraries providing Unicode and @@ -36,12 +37,10 @@ class Icu(Package): version('54.1', 'e844caed8f2ca24c088505b0d6271bc0') - def url_for_version(self, version): return "http://download.icu-project.org/files/icu4c/%s/icu4c-%s-src.tgz" % ( version, str(version).replace('.', '_')) - def install(self, spec, prefix): with working_dir("source"): configure("--prefix=%s" % prefix) diff --git a/var/spack/repos/builtin/packages/icu4c/package.py b/var/spack/repos/builtin/packages/icu4c/package.py index 6cfec99c3f..2bcf86cd13 100644 --- a/var/spack/repos/builtin/packages/icu4c/package.py +++ b/var/spack/repos/builtin/packages/icu4c/package.py @@ -24,9 +24,12 @@ ############################################################################## from spack import * + class Icu4c(Package): - """ICU is a mature, widely used set of C/C++ and Java libraries - providing Unicode and Globalization support for software applications.""" + """ICU is a mature, widely used set of C/C++ and Java libraries providing + Unicode and Globalization support for software applications. + + """ homepage = "http://site.icu-project.org/" url = "http://downloads.sourceforge.net/project/icu/ICU4C/54.1/icu4c-54_1-src.tgz" diff --git a/var/spack/repos/builtin/packages/intel-parallel-studio/package.py b/var/spack/repos/builtin/packages/intel-parallel-studio/package.py index 9ef1724ae0..65db3351a1 100644 --- a/var/spack/repos/builtin/packages/intel-parallel-studio/package.py +++ b/var/spack/repos/builtin/packages/intel-parallel-studio/package.py @@ -17,19 +17,19 @@ class IntelParallelStudio(IntelInstaller): # TODO: can also try the online installer (will download files on demand) version('composer.2016.2', '1133fb831312eb519f7da897fec223fa', - url="file://%s/parallel_studio_xe_2016_composer_edition_update2.tgz" # NOQA: ignore=E501 + url="file://%s/parallel_studio_xe_2016_composer_edition_update2.tgz" % os.getcwd()) version('professional.2016.2', '70be832f2d34c9bf596a5e99d5f2d832', - url="file://%s/parallel_studio_xe_2016_update2.tgz" % os.getcwd()) # NOQA: ignore=E501 + url="file://%s/parallel_studio_xe_2016_update2.tgz" % os.getcwd()) version('cluster.2016.2', '70be832f2d34c9bf596a5e99d5f2d832', - url="file://%s/parallel_studio_xe_2016_update2.tgz" % os.getcwd()) # NOQA: ignore=E501 + url="file://%s/parallel_studio_xe_2016_update2.tgz" % os.getcwd()) version('composer.2016.3', '3208eeabee951fc27579177b593cefe9', - url="file://%s/parallel_studio_xe_2016_composer_edition_update3.tgz" # NOQA: ignore=E501 + url="file://%s/parallel_studio_xe_2016_composer_edition_update3.tgz" % os.getcwd()) version('professional.2016.3', 'eda19bb0d0d19709197ede58f13443f3', - url="file://%s/parallel_studio_xe_2016_update3.tgz" % os.getcwd()) # NOQA: ignore=E501 + url="file://%s/parallel_studio_xe_2016_update3.tgz" % os.getcwd()) version('cluster.2016.3', 'eda19bb0d0d19709197ede58f13443f3', - url="file://%s/parallel_studio_xe_2016_update3.tgz" % os.getcwd()) # NOQA: ignore=E501 + url="file://%s/parallel_studio_xe_2016_update3.tgz" % os.getcwd()) variant('rpath', default=True, description="Add rpath to .cfg files") variant('newdtags', default=False, @@ -104,7 +104,7 @@ class IntelParallelStudio(IntelInstaller): if spec.satisfies('+ipp'): components += ipp_components if spec.satisfies('+tools') and (spec.satisfies('@cluster') or - spec.satisfies('@professional')): + spec.satisfies('@professional')): components += tool_components if spec.satisfies('+all'): @@ -113,10 +113,11 @@ class IntelParallelStudio(IntelInstaller): self.intel_components = ';'.join(components) IntelInstaller.install(self, spec, prefix) - absbindir = os.path.dirname(os.path.realpath(os.path.join( - self.prefix.bin, "icc"))) - abslibdir = os.path.dirname(os.path.realpath(os.path.join - (self.prefix.lib, "intel64", "libimf.a"))) + absbindir = os.path.dirname( + os.path.realpath(os.path.join(self.prefix.bin, "icc"))) + abslibdir = os.path.dirname( + os.path.realpath(os.path.join( + self.prefix.lib, "intel64", "libimf.a"))) os.symlink(self.global_license_file, os.path.join(absbindir, "license.lic")) @@ -134,31 +135,31 @@ class IntelParallelStudio(IntelInstaller): if (spec.satisfies('+all') or spec.satisfies('+mpi')) and \ spec.satisfies('@cluster'): - for ifile in os.listdir(os.path.join(self.prefix, "itac")): - if os.path.isdir(os.path.join(self.prefix, "itac", ifile)): - os.symlink(self.global_license_file, - os.path.join(self.prefix, "itac", ifile, - "license.lic")) - if os.path.isdir(os.path.join(self.prefix, "itac", - ifile, "intel64")): - os.symlink(self.global_license_file, - os.path.join(self.prefix, "itac", - ifile, "intel64", - "license.lic")) - if spec.satisfies('~newdtags'): - wrappers = ["mpif77", "mpif77", "mpif90", "mpif90", - "mpigcc", "mpigcc", "mpigxx", "mpigxx", - "mpiicc", "mpiicc", "mpiicpc", "mpiicpc", - "mpiifort", "mpiifort"] - wrapper_paths = [] - for root, dirs, files in os.walk(spec.prefix): - for name in files: - if name in wrappers: - wrapper_paths.append(os.path.join(spec.prefix, - root, name)) - for wrapper in wrapper_paths: - filter_file(r'-Xlinker --enable-new-dtags', r' ', - wrapper) + for ifile in os.listdir(os.path.join(self.prefix, "itac")): + if os.path.isdir(os.path.join(self.prefix, "itac", ifile)): + os.symlink(self.global_license_file, + os.path.join(self.prefix, "itac", ifile, + "license.lic")) + if os.path.isdir(os.path.join(self.prefix, "itac", + ifile, "intel64")): + os.symlink(self.global_license_file, + os.path.join(self.prefix, "itac", + ifile, "intel64", + "license.lic")) + if spec.satisfies('~newdtags'): + wrappers = ["mpif77", "mpif77", "mpif90", "mpif90", + "mpigcc", "mpigcc", "mpigxx", "mpigxx", + "mpiicc", "mpiicc", "mpiicpc", "mpiicpc", + "mpiifort", "mpiifort"] + wrapper_paths = [] + for root, dirs, files in os.walk(spec.prefix): + for name in files: + if name in wrappers: + wrapper_paths.append(os.path.join(spec.prefix, + root, name)) + for wrapper in wrapper_paths: + filter_file(r'-Xlinker --enable-new-dtags', r' ', + wrapper) if spec.satisfies('+rpath'): for compiler_command in ["icc", "icpc", "ifort"]: diff --git a/var/spack/repos/builtin/packages/intltool/package.py b/var/spack/repos/builtin/packages/intltool/package.py index 48830c474a..e934734691 100644 --- a/var/spack/repos/builtin/packages/intltool/package.py +++ b/var/spack/repos/builtin/packages/intltool/package.py @@ -24,8 +24,12 @@ ############################################################################## from spack import * + class Intltool(Package): - """intltool is a set of tools to centralize translation of many different file formats using GNU gettext-compatible PO files.""" + """intltool is a set of tools to centralize translation of many different + file formats using GNU gettext-compatible PO files. + + """ homepage = 'https://freedesktop.org/wiki/Software/intltool/' version('0.51.0', '12e517cac2b57a0121cda351570f1e63') @@ -37,7 +41,7 @@ class Intltool(Package): def install(self, spec, prefix): # configure, build, install: - options = ['--prefix=%s' % prefix ] + options = ['--prefix=%s' % prefix] configure(*options) make() make('install') diff --git a/var/spack/repos/builtin/packages/ior/package.py b/var/spack/repos/builtin/packages/ior/package.py index 6aa72e5cc9..b8825c0fe4 100644 --- a/var/spack/repos/builtin/packages/ior/package.py +++ b/var/spack/repos/builtin/packages/ior/package.py @@ -25,6 +25,7 @@ from spack import * import os + class Ior(Package): """The IOR software is used for benchmarking parallel file systems using POSIX, MPI-IO, or HDF5 interfaces.""" @@ -41,7 +42,6 @@ class Ior(Package): depends_on('hdf5+mpi', when='+hdf5') depends_on('netcdf+mpi', when='+ncmpi') - def install(self, spec, prefix): os.system('./bootstrap') diff --git a/var/spack/repos/builtin/packages/ipopt/package.py b/var/spack/repos/builtin/packages/ipopt/package.py index 3bd21df89e..d5981e9975 100644 --- a/var/spack/repos/builtin/packages/ipopt/package.py +++ b/var/spack/repos/builtin/packages/ipopt/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Ipopt(Package): """Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software package for large-scale nonlinear optimization.""" @@ -39,8 +40,8 @@ class Ipopt(Package): depends_on("blas") depends_on("lapack") depends_on("pkg-config", type='build') - depends_on("mumps+double~mpi") - + depends_on("mumps+double~mpi") + def install(self, spec, prefix): # Dependency directories blas_dir = spec['blas'].prefix @@ -55,7 +56,7 @@ class Ipopt(Package): # By convention, spack links blas & lapack libs to libblas & liblapack blas_lib = "-L%s" % blas_dir.lib + " -lblas" lapack_lib = "-L%s" % lapack_dir.lib + " -llapack" - + configure_args = [ "--prefix=%s" % prefix, "--with-mumps-incdir=%s" % mumps_dir.include, @@ -65,8 +66,8 @@ class Ipopt(Package): "--with-blas-lib=%s" % blas_lib, "--with-lapack-incdir=%s" % lapack_dir.include, "--with-lapack-lib=%s" % lapack_lib - ] - + ] + configure(*configure_args) # IPOPT does not build correctly in parallel on OS X diff --git a/var/spack/repos/builtin/packages/isl/package.py b/var/spack/repos/builtin/packages/isl/package.py index f456f62225..259f4881f5 100644 --- a/var/spack/repos/builtin/packages/isl/package.py +++ b/var/spack/repos/builtin/packages/isl/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Isl(Package): """isl is a thread-safe C library for manipulating sets and relations of integer points bounded by affine constraints.""" diff --git a/var/spack/repos/builtin/packages/jdk/package.py b/var/spack/repos/builtin/packages/jdk/package.py index 794966f1c3..39ec39b66d 100644 --- a/var/spack/repos/builtin/packages/jdk/package.py +++ b/var/spack/repos/builtin/packages/jdk/package.py @@ -38,9 +38,9 @@ class Jdk(Package): homepage = "http://www.oracle.com/technetwork/java/javase/downloads/index.html" # noqa: E501 version('8u66-linux-x64', '88f31f3d642c3287134297b8c10e61bf', - url="http://download.oracle.com/otn-pub/java/jdk/8u66-b17/jdk-8u66-linux-x64.tar.gz") + url="http://download.oracle.com/otn-pub/java/jdk/8u66-b17/jdk-8u66-linux-x64.tar.gz") version('8u92-linux-x64', '65a1cc17ea362453a6e0eb4f13be76e4', - url="http://download.oracle.com/otn-pub/java/jdk/8u92-b14/jdk-8u92-linux-x64.tar.gz") + url="http://download.oracle.com/otn-pub/java/jdk/8u92-b14/jdk-8u92-linux-x64.tar.gz") # Oracle requires that you accept their License Agreement in order # to access the Java packages in download.oracle.com. In order to diff --git a/var/spack/repos/builtin/packages/jemalloc/package.py b/var/spack/repos/builtin/packages/jemalloc/package.py index a67754a513..f5a983b7a9 100644 --- a/var/spack/repos/builtin/packages/jemalloc/package.py +++ b/var/spack/repos/builtin/packages/jemalloc/package.py @@ -24,8 +24,10 @@ ############################################################################## from spack import * + class Jemalloc(Package): - """jemalloc is a general purpose malloc(3) implementation that emphasizes fragmentation avoidance and scalable concurrency support.""" + """jemalloc is a general purpose malloc(3) implementation that emphasizes + fragmentation avoidance and scalable concurrency support.""" homepage = "http://www.canonware.com/jemalloc/" url = "https://github.com/jemalloc/jemalloc/releases/download/4.0.4/jemalloc-4.0.4.tar.bz2" @@ -36,7 +38,7 @@ class Jemalloc(Package): variant('prof', default=False, description='Enable heap profiling') def install(self, spec, prefix): - configure_args = ['--prefix=%s' % prefix,] + configure_args = ['--prefix=%s' % prefix, ] if '+stats' in spec: configure_args.append('--enable-stats') diff --git a/var/spack/repos/builtin/packages/jpeg/package.py b/var/spack/repos/builtin/packages/jpeg/package.py index e4a9d8535b..594240d950 100644 --- a/var/spack/repos/builtin/packages/jpeg/package.py +++ b/var/spack/repos/builtin/packages/jpeg/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Jpeg(Package): """libjpeg is a widely used free library with functions for handling the JPEG image data format. It implements a JPEG codec (encoding and decoding) diff --git a/var/spack/repos/builtin/packages/judy/package.py b/var/spack/repos/builtin/packages/judy/package.py index 8d47767ef0..8b8b261e53 100644 --- a/var/spack/repos/builtin/packages/judy/package.py +++ b/var/spack/repos/builtin/packages/judy/package.py @@ -24,8 +24,9 @@ ############################################################################## from spack import * + class Judy(Package): - """A general-purpose dynamic array, associative array and hash-trie - Judy""" + """Judy: General-purpose dynamic array, associative array and hash-trie.""" homepage = "http://judy.sourceforge.net/" url = "http://downloads.sourceforge.net/project/judy/judy/Judy-1.0.5/Judy-1.0.5.tar.gz" diff --git a/var/spack/repos/builtin/packages/kealib/package.py b/var/spack/repos/builtin/packages/kealib/package.py index 7c73c4518b..5346fc8cb9 100644 --- a/var/spack/repos/builtin/packages/kealib/package.py +++ b/var/spack/repos/builtin/packages/kealib/package.py @@ -24,20 +24,21 @@ ############################################################################## from spack import * + class Kealib(Package): """An HDF5 Based Raster File Format - + KEALib provides an implementation of the GDAL data model. The format supports raster attribute tables, image pyramids, meta-data and in-built statistics while also handling very large files and compression throughout. - + Based on the HDF5 standard, it also provides a base from which other formats can be derived and is a good choice for long term data archiving. An independent software library (libkea) provides complete access to the KEA image format and a GDAL driver allowing KEA images to be used from any GDAL supported software. - + Development work on this project has been funded by Landcare Research. """ homepage = "http://kealib.org/" @@ -51,7 +52,8 @@ class Kealib(Package): with working_dir('trunk', create=False): cmake_args = [] cmake_args.append("-DCMAKE_INSTALL_PREFIX=%s" % prefix) - cmake_args.append("-DHDF5_INCLUDE_DIR=%s" % spec['hdf5'].prefix.include) + cmake_args.append("-DHDF5_INCLUDE_DIR=%s" % + spec['hdf5'].prefix.include) cmake_args.append("-DHDF5_LIB_PATH=%s" % spec['hdf5'].prefix.lib) cmake('.', *cmake_args) diff --git a/var/spack/repos/builtin/packages/kripke/package.py b/var/spack/repos/builtin/packages/kripke/package.py index d405e9a51d..cf8d2b7e39 100644 --- a/var/spack/repos/builtin/packages/kripke/package.py +++ b/var/spack/repos/builtin/packages/kripke/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Kripke(Package): """Kripke is a simple, scalable, 3D Sn deterministic particle transport proxy/mini app. diff --git a/var/spack/repos/builtin/packages/lcms/package.py b/var/spack/repos/builtin/packages/lcms/package.py index 434d8e6c98..4d3fc59568 100644 --- a/var/spack/repos/builtin/packages/lcms/package.py +++ b/var/spack/repos/builtin/packages/lcms/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Lcms(Package): """Little cms is a color management library. Implements fast transforms between ICC profiles. It is focused on speed, and is diff --git a/var/spack/repos/builtin/packages/leveldb/package.py b/var/spack/repos/builtin/packages/leveldb/package.py index 408f1d31c1..f571baa1ce 100644 --- a/var/spack/repos/builtin/packages/leveldb/package.py +++ b/var/spack/repos/builtin/packages/leveldb/package.py @@ -22,10 +22,10 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -import os import glob from spack import * + class Leveldb(Package): """LevelDB is a fast key-value storage library written at Google that provides an ordered mapping from string keys to string values.""" diff --git a/var/spack/repos/builtin/packages/libNBC/package.py b/var/spack/repos/builtin/packages/libNBC/package.py index ed1d0ce96f..414498a37a 100644 --- a/var/spack/repos/builtin/packages/libNBC/package.py +++ b/var/spack/repos/builtin/packages/libNBC/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libnbc(Package): """LibNBC is a prototypic implementation of a nonblocking interface for MPI collective operations. Based on ANSI C and diff --git a/var/spack/repos/builtin/packages/libarchive/package.py b/var/spack/repos/builtin/packages/libarchive/package.py index f11d732afa..0cf3932957 100644 --- a/var/spack/repos/builtin/packages/libarchive/package.py +++ b/var/spack/repos/builtin/packages/libarchive/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libarchive(Package): """libarchive: C library and command-line tools for reading and writing tar, cpio, zip, ISO, and other archive formats.""" diff --git a/var/spack/repos/builtin/packages/libcerf/package.py b/var/spack/repos/builtin/packages/libcerf/package.py index b30d76f4e9..7fb47f8dcd 100644 --- a/var/spack/repos/builtin/packages/libcerf/package.py +++ b/var/spack/repos/builtin/packages/libcerf/package.py @@ -27,9 +27,10 @@ from spack import * class Libcerf(Package): - """ - A self-contained C library providing complex error functions, based on Faddeeva's plasma dispersion function - w(z). Also provides Dawson's integral and Voigt's convolution of a Gaussian and a Lorentzian + """A self-contained C library providing complex error functions, based + on Faddeeva's plasma dispersion function w(z). Also provides Dawson's + integral and Voigt's convolution of a Gaussian and a Lorentzian + """ homepage = "http://sourceforge.net/projects/libcerf" url = "http://downloads.sourceforge.net/project/libcerf/libcerf-1.3.tgz" diff --git a/var/spack/repos/builtin/packages/libcircle/package.py b/var/spack/repos/builtin/packages/libcircle/package.py index 75fdb96125..971c29f5f1 100644 --- a/var/spack/repos/builtin/packages/libcircle/package.py +++ b/var/spack/repos/builtin/packages/libcircle/package.py @@ -22,9 +22,9 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -import os from spack import * + class Libcircle(Package): """libcircle provides an efficient distributed queue on a cluster, using self-stabilizing work stealing.""" @@ -32,7 +32,7 @@ class Libcircle(Package): homepage = "https://github.com/hpc/libcircle" version('0.2.1-rc.1', '2b1369a5736457239f908abf88143ec2', - url='https://github.com/hpc/libcircle/releases/download/0.2.1-rc.1/libcircle-0.2.1-rc.1.tar.gz') + url='https://github.com/hpc/libcircle/releases/download/0.2.1-rc.1/libcircle-0.2.1-rc.1.tar.gz') depends_on('mpi') diff --git a/var/spack/repos/builtin/packages/libdrm/package.py b/var/spack/repos/builtin/packages/libdrm/package.py index b05412e588..543eab11b3 100644 --- a/var/spack/repos/builtin/packages/libdrm/package.py +++ b/var/spack/repos/builtin/packages/libdrm/package.py @@ -24,12 +24,13 @@ ############################################################################## from spack import * + class Libdrm(Package): """A userspace library for accessing the DRM, direct rendering manager, on Linux, BSD and other operating systems that support the ioctl interface.""" - homepage = "http://dri.freedesktop.org/libdrm/" # no real website... + homepage = "http://dri.freedesktop.org/libdrm/" # no real website... url = "http://dri.freedesktop.org/libdrm/libdrm-2.4.59.tar.gz" version('2.4.59', '105ac7af1afcd742d402ca7b4eb168b6') diff --git a/var/spack/repos/builtin/packages/libedit/package.py b/var/spack/repos/builtin/packages/libedit/package.py index 4366344679..235e7648bc 100644 --- a/var/spack/repos/builtin/packages/libedit/package.py +++ b/var/spack/repos/builtin/packages/libedit/package.py @@ -24,12 +24,14 @@ ############################################################################## from spack import * + class Libedit(Package): """An autotools compatible port of the NetBSD editline library""" homepage = "http://thrysoee.dk/editline/" url = "http://thrysoee.dk/editline/libedit-20150325-3.1.tar.gz" - version('3.1', '43cdb5df3061d78b5e9d59109871b4f6', url="http://thrysoee.dk/editline/libedit-20150325-3.1.tar.gz") + version('3.1', '43cdb5df3061d78b5e9d59109871b4f6', + url="http://thrysoee.dk/editline/libedit-20150325-3.1.tar.gz") depends_on('ncurses') diff --git a/var/spack/repos/builtin/packages/libelf/package.py b/var/spack/repos/builtin/packages/libelf/package.py index 1e1deea818..3304d27bdb 100644 --- a/var/spack/repos/builtin/packages/libelf/package.py +++ b/var/spack/repos/builtin/packages/libelf/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libelf(Package): """libelf lets you read, modify or create ELF object files in an architecture-independent way. The library takes care of size diff --git a/var/spack/repos/builtin/packages/libevent/package.py b/var/spack/repos/builtin/packages/libevent/package.py index 3ae427a2eb..65b3a716c0 100644 --- a/var/spack/repos/builtin/packages/libevent/package.py +++ b/var/spack/repos/builtin/packages/libevent/package.py @@ -24,11 +24,13 @@ ############################################################################## from spack import * + class Libevent(Package): """The libevent API provides a mechanism to execute a callback function - when a specific event occurs on a file descriptor or after a timeout has been - reached. Furthermore, libevent also support callbacks due to signals or regular - timeouts. + when a specific event occurs on a file descriptor or after a + timeout has been reached. Furthermore, libevent also support + callbacks due to signals or regular timeouts. + """ homepage = "http://libevent.org" @@ -46,7 +48,8 @@ class Libevent(Package): version('2.0.13', 'af786b4b3f790c9d3279792edf7867fc') version('2.0.12', '42986228baf95e325778ed328a93e070') - variant('openssl', default=True, description="Build with encryption enabled at the libevent level.") + variant('openssl', default=True, + description="Build with encryption enabled at the libevent level.") depends_on('openssl', when='+openssl') def install(self, spec, prefix): diff --git a/var/spack/repos/builtin/packages/libffi/package.py b/var/spack/repos/builtin/packages/libffi/package.py index 1d3c85c8e0..fa113ee86c 100644 --- a/var/spack/repos/builtin/packages/libffi/package.py +++ b/var/spack/repos/builtin/packages/libffi/package.py @@ -24,18 +24,21 @@ ############################################################################## from spack import * + class Libffi(Package): """The libffi library provides a portable, high level programming interface to various calling conventions. This allows a programmer to call any function specified by a call interface description at run time.""" homepage = "https://sourceware.org/libffi/" - - version('3.2.1','83b89587607e3eb65c70d361f13bab43',url = "ftp://sourceware.org/pub/libffi/libffi-3.2.1.tar.gz") - #version('3.1', 'f5898b29bbfd70502831a212d9249d10',url = "ftp://sourceware.org/pub/libffi/libffi-3.1.tar.gz") # Has a bug $(lib64) instead of ${lib64} in libffi.pc + + version('3.2.1', '83b89587607e3eb65c70d361f13bab43', + url="ftp://sourceware.org/pub/libffi/libffi-3.2.1.tar.gz") + # version('3.1', 'f5898b29bbfd70502831a212d9249d10',url = + # "ftp://sourceware.org/pub/libffi/libffi-3.1.tar.gz") # Has a bug + # $(lib64) instead of ${lib64} in libffi.pc def install(self, spec, prefix): configure("--prefix=%s" % prefix) make() make("install") - diff --git a/var/spack/repos/builtin/packages/libgcrypt/package.py b/var/spack/repos/builtin/packages/libgcrypt/package.py index b1a316cc1b..b556def4d3 100644 --- a/var/spack/repos/builtin/packages/libgcrypt/package.py +++ b/var/spack/repos/builtin/packages/libgcrypt/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libgcrypt(Package): """Libgcrypt is a general purpose cryptographic library based on the code from GnuPG. It provides functions for all cryptographic diff --git a/var/spack/repos/builtin/packages/libgd/package.py b/var/spack/repos/builtin/packages/libgd/package.py index 938f4f6f3b..acfdebb972 100644 --- a/var/spack/repos/builtin/packages/libgd/package.py +++ b/var/spack/repos/builtin/packages/libgd/package.py @@ -27,11 +27,14 @@ from spack import * class Libgd(Package): - """ - GD is an open source code library for the dynamic creation of images by programmers. GD is written in C, and - "wrappers" are available for Perl, PHP and other languages. GD creates PNG, JPEG, GIF, WebP, XPM, BMP images, - among other formats. GD is commonly used to generate charts, graphics, thumbnails, and most anything else, on the - fly. While not restricted to use on the web, the most common applications of GD involve website development. + """GD is an open source code library for the dynamic creation of images + by programmers. GD is written in C, and "wrappers" are available + for Perl, PHP and other languages. GD creates PNG, JPEG, GIF, + WebP, XPM, BMP images, among other formats. GD is commonly used to + generate charts, graphics, thumbnails, and most anything else, on + the fly. While not restricted to use on the web, the most common + applications of GD involve website development. + """ homepage = "https://github.com/libgd/libgd" diff --git a/var/spack/repos/builtin/packages/libgpg-error/package.py b/var/spack/repos/builtin/packages/libgpg-error/package.py index 3fe82a69e7..a0e2acd516 100644 --- a/var/spack/repos/builtin/packages/libgpg-error/package.py +++ b/var/spack/repos/builtin/packages/libgpg-error/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class LibgpgError(Package): """Libgpg-error is a small library that defines common error values for all GnuPG components. Among these are GPG, GPGSM, diff --git a/var/spack/repos/builtin/packages/libjpeg-turbo/package.py b/var/spack/repos/builtin/packages/libjpeg-turbo/package.py index d1239ba0d9..6252a88542 100644 --- a/var/spack/repos/builtin/packages/libjpeg-turbo/package.py +++ b/var/spack/repos/builtin/packages/libjpeg-turbo/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class LibjpegTurbo(Package): """libjpeg-turbo is a fork of the original IJG libjpeg which uses SIMD to accelerate baseline JPEG compression and diff --git a/var/spack/repos/builtin/packages/libmng/package.py b/var/spack/repos/builtin/packages/libmng/package.py index dd0903c4bd..a77aada79c 100644 --- a/var/spack/repos/builtin/packages/libmng/package.py +++ b/var/spack/repos/builtin/packages/libmng/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libmng(Package): """libmng -THE reference library for reading, displaying, writing and examining Multiple-Image Network Graphics. MNG is the animation @@ -39,7 +40,8 @@ class Libmng(Package): def patch(self): # jpeg requires stdio to beincluded before its headrs. - filter_file(r'^(\#include \<jpeglib\.h\>)', '#include<stdio.h>\n\\1', 'libmng_types.h') + filter_file(r'^(\#include \<jpeglib\.h\>)', + '#include<stdio.h>\n\\1', 'libmng_types.h') def install(self, spec, prefix): configure("--prefix=%s" % prefix) diff --git a/var/spack/repos/builtin/packages/libmonitor/package.py b/var/spack/repos/builtin/packages/libmonitor/package.py index 611e602e2f..f680baa265 100644 --- a/var/spack/repos/builtin/packages/libmonitor/package.py +++ b/var/spack/repos/builtin/packages/libmonitor/package.py @@ -28,8 +28,10 @@ from spack import * class Libmonitor(Package): """Libmonitor is a library for process and thread control.""" homepage = "https://github.com/HPCToolkit/libmonitor" - version('20130218', git='https://github.com/HPCToolkit/libmonitor.git', commit='4f2311e') - variant('krellpatch', default=False, description="build with openspeedshop based patch.") + version('20130218', git='https://github.com/HPCToolkit/libmonitor.git', + commit='4f2311e') + variant('krellpatch', default=False, + description="build with openspeedshop based patch.") patch('libmonitorkrell-0000.patch', when='@20130218+krellpatch') patch('libmonitorkrell-0001.patch', when='@20130218+krellpatch') diff --git a/var/spack/repos/builtin/packages/libpciaccess/package.py b/var/spack/repos/builtin/packages/libpciaccess/package.py index 91cef95cec..a65b81b69b 100644 --- a/var/spack/repos/builtin/packages/libpciaccess/package.py +++ b/var/spack/repos/builtin/packages/libpciaccess/package.py @@ -23,7 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os.path + class Libpciaccess(Package): """Generic PCI access library.""" diff --git a/var/spack/repos/builtin/packages/libpng/package.py b/var/spack/repos/builtin/packages/libpng/package.py index 951b91eabd..1afe4911e6 100644 --- a/var/spack/repos/builtin/packages/libpng/package.py +++ b/var/spack/repos/builtin/packages/libpng/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libpng(Package): """libpng graphics file format""" homepage = "http://www.libpng.org/pub/png/libpng.html" diff --git a/var/spack/repos/builtin/packages/libpthread-stubs/package.py b/var/spack/repos/builtin/packages/libpthread-stubs/package.py index 4bcca43c24..ea36758a83 100644 --- a/var/spack/repos/builtin/packages/libpthread-stubs/package.py +++ b/var/spack/repos/builtin/packages/libpthread-stubs/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class LibpthreadStubs(Package): """The libpthread-stubs package provides weak aliases for pthread functions not provided in libc or otherwise available by diff --git a/var/spack/repos/builtin/packages/libsigsegv/package.py b/var/spack/repos/builtin/packages/libsigsegv/package.py index 14acdcbcd2..715d24bcf7 100644 --- a/var/spack/repos/builtin/packages/libsigsegv/package.py +++ b/var/spack/repos/builtin/packages/libsigsegv/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libsigsegv(Package): """GNU libsigsegv is a library for handling page faults in user mode.""" homepage = "https://www.gnu.org/software/libsigsegv/" diff --git a/var/spack/repos/builtin/packages/libsodium/package.py b/var/spack/repos/builtin/packages/libsodium/package.py index 831a75e659..1c930e21dd 100644 --- a/var/spack/repos/builtin/packages/libsodium/package.py +++ b/var/spack/repos/builtin/packages/libsodium/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libsodium(Package): """Sodium is a modern, easy-to-use software library for encryption, decryption, signatures, password hashing and more.""" diff --git a/var/spack/repos/builtin/packages/libtermkey/package.py b/var/spack/repos/builtin/packages/libtermkey/package.py index c7db959a40..64688505c4 100644 --- a/var/spack/repos/builtin/packages/libtermkey/package.py +++ b/var/spack/repos/builtin/packages/libtermkey/package.py @@ -24,17 +24,17 @@ ############################################################################## from spack import * + class Libtermkey(Package): """Easy keyboard entry processing for terminal programs""" homepage = "http://www.leonerd.org.uk/code/libtermkey/" url = "http://www.leonerd.org.uk/code/libtermkey/libtermkey-0.18.tar.gz" - version('0.18' , '3be2e3e5a851a49cc5e8567ac108b520') - version('0.17' , '20edb99e0d95ec1690fe90e6a555ae6d') - version('0.16' , '7a24b675aaeb142d30db28e7554987d4') + version('0.18', '3be2e3e5a851a49cc5e8567ac108b520') + version('0.17', '20edb99e0d95ec1690fe90e6a555ae6d') + version('0.16', '7a24b675aaeb142d30db28e7554987d4') version('0.15b', '27689756e6c86c56ae454f2ac259bc3d') - version('0.14' , 'e08ce30f440f9715c459060e0e048978') - + version('0.14', 'e08ce30f440f9715c459060e0e048978') def install(self, spec, prefix): make() diff --git a/var/spack/repos/builtin/packages/libtiff/package.py b/var/spack/repos/builtin/packages/libtiff/package.py index 4b03e7997b..cef9fcaae5 100644 --- a/var/spack/repos/builtin/packages/libtiff/package.py +++ b/var/spack/repos/builtin/packages/libtiff/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libtiff(Package): """libtiff graphics format library""" homepage = "http://www.remotesensing.org/libtiff/" diff --git a/var/spack/repos/builtin/packages/libunwind/package.py b/var/spack/repos/builtin/packages/libunwind/package.py index 980b765c02..63ab4aec59 100644 --- a/var/spack/repos/builtin/packages/libunwind/package.py +++ b/var/spack/repos/builtin/packages/libunwind/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libunwind(Package): """A portable and efficient C programming interface (API) to determine the call-chain of a program.""" diff --git a/var/spack/repos/builtin/packages/libuuid/package.py b/var/spack/repos/builtin/packages/libuuid/package.py index 0dd32ec77d..553f0dddb8 100644 --- a/var/spack/repos/builtin/packages/libuuid/package.py +++ b/var/spack/repos/builtin/packages/libuuid/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libuuid(Package): """Portable uuid C library""" # FIXME: add a proper url for your package's homepage here. diff --git a/var/spack/repos/builtin/packages/libuv/package.py b/var/spack/repos/builtin/packages/libuv/package.py index 0d29270b38..dae10809f2 100644 --- a/var/spack/repos/builtin/packages/libuv/package.py +++ b/var/spack/repos/builtin/packages/libuv/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libuv(Package): """Multi-platform library with a focus on asynchronous IO""" homepage = "http://libuv.org" diff --git a/var/spack/repos/builtin/packages/libvterm/package.py b/var/spack/repos/builtin/packages/libvterm/package.py index e57af273ad..2e1ef99b98 100644 --- a/var/spack/repos/builtin/packages/libvterm/package.py +++ b/var/spack/repos/builtin/packages/libvterm/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libvterm(Package): """An abstract library implementation of a terminal emulator""" homepage = "http://www.leonerd.org.uk/code/libvterm/" diff --git a/var/spack/repos/builtin/packages/libxc/package.py b/var/spack/repos/builtin/packages/libxc/package.py index 87437373d6..9ea4d1c326 100644 --- a/var/spack/repos/builtin/packages/libxc/package.py +++ b/var/spack/repos/builtin/packages/libxc/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libxc(Package): """Libxc is a library of exchange-correlation functionals for density-functional theory.""" @@ -33,7 +34,6 @@ class Libxc(Package): version('2.2.2', 'd9f90a0d6e36df6c1312b6422280f2ec') - def install(self, spec, prefix): configure('--prefix=%s' % prefix, '--enable-shared') diff --git a/var/spack/repos/builtin/packages/libxcb/package.py b/var/spack/repos/builtin/packages/libxcb/package.py index 586eb970d8..82ddb2742e 100644 --- a/var/spack/repos/builtin/packages/libxcb/package.py +++ b/var/spack/repos/builtin/packages/libxcb/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libxcb(Package): """The X protocol C-language Binding (XCB) is a replacement for Xlib featuring a small footprint, latency hiding, direct @@ -43,11 +44,14 @@ class Libxcb(Package): depends_on('libxau') def patch(self): - filter_file('typedef struct xcb_auth_info_t {', 'typedef struct {', 'src/xcb.h') - + filter_file( + 'typedef struct xcb_auth_info_t {', + 'typedef struct {', + 'src/xcb.h') def install(self, spec, prefix): - env['PKG_CONFIG_PATH'] = env['PKG_CONFIG_PATH'] + ':/usr/lib64/pkgconfig' + env['PKG_CONFIG_PATH'] = env[ + 'PKG_CONFIG_PATH'] + ':/usr/lib64/pkgconfig' configure("--prefix=%s" % prefix) make() diff --git a/var/spack/repos/builtin/packages/libxml2/package.py b/var/spack/repos/builtin/packages/libxml2/package.py index a6dabd2c05..0f4810fa8a 100644 --- a/var/spack/repos/builtin/packages/libxml2/package.py +++ b/var/spack/repos/builtin/packages/libxml2/package.py @@ -36,7 +36,9 @@ class Libxml2(Package): variant('python', default=False, description='Enable Python support') - extends('python', when='+python', ignore=r'(bin.*$)|(include.*$)|(share.*$)|(lib/libxml2.*$)|(lib/xml2.*$)|(lib/cmake.*$)') + extends('python', when='+python', + ignore=r'(bin.*$)|(include.*$)|(share.*$)|(lib/libxml2.*$)|' + '(lib/xml2.*$)|(lib/cmake.*$)') depends_on('zlib') depends_on('xz') diff --git a/var/spack/repos/builtin/packages/libxshmfence/package.py b/var/spack/repos/builtin/packages/libxshmfence/package.py index 6d63ea6426..fe5d5667e9 100644 --- a/var/spack/repos/builtin/packages/libxshmfence/package.py +++ b/var/spack/repos/builtin/packages/libxshmfence/package.py @@ -24,11 +24,12 @@ ############################################################################## from spack import * + class Libxshmfence(Package): """This is a tiny library that exposes a event API on top of Linux futexes.""" - homepage = "http://keithp.com/blogs/dri3_extension/" # not really... + homepage = "http://keithp.com/blogs/dri3_extension/" # not really... url = "http://xorg.freedesktop.org/archive/individual/lib/libxshmfence-1.2.tar.gz" version('1.2', 'f0b30c0fc568b22ec524859ee28556f1') diff --git a/var/spack/repos/builtin/packages/libxslt/package.py b/var/spack/repos/builtin/packages/libxslt/package.py index c6c439ad09..47d1c170c6 100644 --- a/var/spack/repos/builtin/packages/libxslt/package.py +++ b/var/spack/repos/builtin/packages/libxslt/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Libxslt(Package): """Libxslt is the XSLT C library developed for the GNOME project. XSLT itself is a an XML language to define diff --git a/var/spack/repos/builtin/packages/llvm-lld/package.py b/var/spack/repos/builtin/packages/llvm-lld/package.py index 127fe1204d..1dcf88e3c0 100644 --- a/var/spack/repos/builtin/packages/llvm-lld/package.py +++ b/var/spack/repos/builtin/packages/llvm-lld/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class LlvmLld(Package): """lld - The LLVM Linker lld is a new set of modular code for creating linker tools.""" diff --git a/var/spack/repos/builtin/packages/llvm/package.py b/var/spack/repos/builtin/packages/llvm/package.py index e79c123a7e..61ea8daac4 100644 --- a/var/spack/repos/builtin/packages/llvm/package.py +++ b/var/spack/repos/builtin/packages/llvm/package.py @@ -23,32 +23,51 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os, glob +import os class Llvm(Package): """The LLVM Project is a collection of modular and reusable compiler and - toolchain technologies. Despite its name, LLVM has little to do with - traditional virtual machines, though it does provide helpful libraries - that can be used to build them. The name "LLVM" itself is not an acronym; - it is the full name of the project. + toolchain technologies. Despite its name, LLVM has little to do + with traditional virtual machines, though it does provide helpful + libraries that can be used to build them. The name "LLVM" itself + is not an acronym; it is the full name of the project. + """ homepage = 'http://llvm.org/' url = 'http://llvm.org/releases/3.7.1/llvm-3.7.1.src.tar.xz' - version('3.0', 'a8e5f5f1c1adebae7b4a654c376a6005', url='http://llvm.org/releases/3.0/llvm-3.0.tar.gz') # currently required by mesa package + # currently required by mesa package + version('3.0', 'a8e5f5f1c1adebae7b4a654c376a6005', + url='http://llvm.org/releases/3.0/llvm-3.0.tar.gz') - variant('debug', default=False, description="Build a debug version of LLVM, this increases binary size by an order of magnitude, make sure you have 20-30gb of space available to build this") - variant('clang', default=True, description="Build the LLVM C/C++/Objective-C compiler frontend") + variant('debug', default=False, + description="Build a debug version of LLVM, this increases " + "binary size by an order of magnitude, make sure you have " + "20-30gb of space available to build this") + variant('clang', default=True, + description="Build the LLVM C/C++/Objective-C compiler frontend") variant('lldb', default=True, description="Build the LLVM debugger") - variant('internal_unwind', default=True, description="Build the libcxxabi libunwind") - variant('polly', default=True, description="Build the LLVM polyhedral optimization plugin, only builds for 3.7.0+") - variant('libcxx', default=True, description="Build the LLVM C++ standard library") - variant('compiler-rt', default=True, description="Build the LLVM compiler runtime, including sanitizers") - variant('gold', default=True, description="Add support for LTO with the gold linker plugin") - variant('shared_libs', default=False, description="Build all components as shared libraries, faster, less memory to build, less stable") - variant('link_dylib', default=False, description="Build and link the libLLVM shared library rather than static") - variant('all_targets', default=True, description="Build all supported targets, default targets <current arch>,NVPTX,AMDGPU,CppBackend") + variant('internal_unwind', default=True, + description="Build the libcxxabi libunwind") + variant('polly', default=True, + description="Build the LLVM polyhedral optimization plugin, " + "only builds for 3.7.0+") + variant('libcxx', default=True, + description="Build the LLVM C++ standard library") + variant('compiler-rt', default=True, + description="Build LLVM compiler runtime, including sanitizers") + variant('gold', default=True, + description="Add support for LTO with the gold linker plugin") + variant('shared_libs', default=False, + description="Build all components as shared libraries, faster, " + "less memory to build, less stable") + variant('link_dylib', default=False, + description="Build and link the libLLVM shared library rather " + "than static") + variant('all_targets', default=True, + description="Build all supported targets, default targets " + "<current arch>,NVPTX,AMDGPU,CppBackend") # Build dependency depends_on('cmake@2.8.12.2:', type='build') @@ -68,147 +87,147 @@ class Llvm(Package): depends_on('gmp', when='@:3.6.999 +polly') depends_on('isl', when='@:3.6.999 +polly') - base_url = 'http://llvm.org/releases/%%(version)s/%(pkg)s-%%(version)s.src.tar.xz' - llvm_url = base_url % { 'pkg' : 'llvm'} + base_url = 'http://llvm.org/releases/%%(version)s/%(pkg)s-%%(version)s.src.tar.xz' + llvm_url = base_url % {'pkg': 'llvm'} resources = { - 'compiler-rt' : { - 'url' : base_url % { 'pkg' : 'compiler-rt'}, - 'destination' : 'projects', - 'placement' : 'compiler-rt', - }, - 'openmp' : { - 'url' : base_url % { 'pkg' : 'openmp'}, - 'destination' : 'projects', - 'placement' : 'openmp', - }, - 'libcxx' : { - 'url' : base_url % { 'pkg' : 'libcxx'}, - 'destination' : 'projects', - 'placement' : 'libcxx', - }, - 'libcxxabi' : { - 'url' : base_url % { 'pkg' : 'libcxxabi'}, - 'destination' : 'projects', - 'placement' : 'libcxxabi', - }, - 'clang' : { - 'url' : base_url % { 'pkg' : 'cfe'}, - 'destination' : 'tools', - 'placement' : 'clang', - }, - 'clang-tools-extra' : { - 'url' : base_url % { 'pkg' : 'clang-tools-extra'}, - 'destination' : 'tools/clang/tools', - 'placement' : 'extra', - }, - 'lldb' : { - 'url' : base_url % { 'pkg' : 'lldb'}, - 'destination' : 'tools', - 'placement' : 'lldb', - }, - 'polly' : { - 'url' : base_url % { 'pkg' : 'polly'}, - 'destination' : 'tools', - 'placement' : 'polly', - }, - 'llvm-libunwind' : { - 'url' : base_url % { 'pkg' : 'libunwind'}, - 'destination' : 'projects', - 'placement' : 'libunwind', - }, - } + 'compiler-rt': { + 'url': base_url % {'pkg': 'compiler-rt'}, + 'destination': 'projects', + 'placement': 'compiler-rt', + }, + 'openmp': { + 'url': base_url % {'pkg': 'openmp'}, + 'destination': 'projects', + 'placement': 'openmp', + }, + 'libcxx': { + 'url': base_url % {'pkg': 'libcxx'}, + 'destination': 'projects', + 'placement': 'libcxx', + }, + 'libcxxabi': { + 'url': base_url % {'pkg': 'libcxxabi'}, + 'destination': 'projects', + 'placement': 'libcxxabi', + }, + 'clang': { + 'url': base_url % {'pkg': 'cfe'}, + 'destination': 'tools', + 'placement': 'clang', + }, + 'clang-tools-extra': { + 'url': base_url % {'pkg': 'clang-tools-extra'}, + 'destination': 'tools/clang/tools', + 'placement': 'extra', + }, + 'lldb': { + 'url': base_url % {'pkg': 'lldb'}, + 'destination': 'tools', + 'placement': 'lldb', + }, + 'polly': { + 'url': base_url % {'pkg': 'polly'}, + 'destination': 'tools', + 'placement': 'polly', + }, + 'llvm-libunwind': { + 'url': base_url % {'pkg': 'libunwind'}, + 'destination': 'projects', + 'placement': 'libunwind', + }, + } releases = [ - { - 'version' : 'trunk', - 'repo' : 'http://llvm.org/svn/llvm-project/llvm/trunk', - 'resources' : { - 'compiler-rt' : 'http://llvm.org/svn/llvm-project/compiler-rt/trunk', - 'openmp' : 'http://llvm.org/svn/llvm-project/openmp/trunk', - 'polly' : 'http://llvm.org/svn/llvm-project/polly/trunk', - 'libcxx' : 'http://llvm.org/svn/llvm-project/libcxx/trunk', - 'libcxxabi' : 'http://llvm.org/svn/llvm-project/libcxxabi/trunk', - 'clang' : 'http://llvm.org/svn/llvm-project/cfe/trunk', - 'clang-tools-extra' : 'http://llvm.org/svn/llvm-project/clang-tools-extra/trunk', - 'lldb' : 'http://llvm.org/svn/llvm-project/lldb/trunk', - 'llvm-libunwind' : 'http://llvm.org/svn/llvm-project/libunwind/trunk', - } - }, - { - 'version' : '3.8.0', - 'md5':'07a7a74f3c6bd65de4702bf941b511a0', - 'resources' : { - 'compiler-rt' : 'd6fcbe14352ffb708e4d1ac2e48bb025', - 'openmp' : '8fd7cc35d48051613cf1e750e9f22e40', - 'polly' : '1b3b20f52d34a4024e21a4ea7112caa7', - 'libcxx' : 'd6e0bdbbee39f7907ad74fd56d03b88a', - 'libcxxabi' : 'bbe6b4d72c7c5978550d370af529bcf7', - 'clang' : 'cc99e7019bb74e6459e80863606250c5', - 'clang-tools-extra' : 'c2344f50e0eea0b402f0092a80ddc036', - 'lldb' : 'a5da35ed9cc8c8817ee854e3dbfba00e', - 'llvm-libunwind' : '162ade468607f153cca12be90b5194fa', - } - }, - { - 'version' : '3.7.1', - 'md5':'bf8b3a2c79e61212c5409041dfdbd319', - 'resources' : { - 'compiler-rt' : '1c6975daf30bb3b0473b53c3a1a6ff01', - 'openmp' : 'b4ad08cda4e5c22e42b66062b140438e', - 'polly' : '3a2a7367002740881637f4d47bca4dc3', - 'libcxx' : 'f9c43fa552a10e14ff53b94d04bea140', - 'libcxxabi' : '52d925afac9f97e9dcac90745255c169', - 'clang' : '0acd026b5529164197563d135a8fd83e', - 'clang-tools-extra' : '5d49ff745037f061a7c86aeb6a24c3d2', - 'lldb' : 'a106d8a0d21fc84d76953822fbaf3398', - 'llvm-libunwind' : '814bd52c9247c5d04629658fbcb3ab8c', - } - }, - { - 'version' : '3.7.0', - 'md5':'b98b9495e5655a672d6cb83e1a180f8e', - 'resources' : { - 'compiler-rt' : '383c10affd513026f08936b5525523f5', - 'openmp' : 'f482c86fdead50ba246a1a2b0bbf206f', - 'polly' : '32f93ffc9cc7e042df22089761558f8b', - 'libcxx' : '46aa5175cbe1ad42d6e9c995968e56dd', - 'libcxxabi' : '5aa769e2fca79fa5335cfae8f6258772', - 'clang' : '8f9d27335e7331cf0a4711e952f21f01', - 'clang-tools-extra' : 'd5a87dacb65d981a427a536f6964642e', - 'lldb' : 'e5931740400d1dc3e7db4c7ba2ceff68', - 'llvm-libunwind' : '9a75392eb7eb8ed5c0840007e212baf5', - } - }, - { - 'version' : '3.6.2', - 'md5':'0c1ee3597d75280dee603bae9cbf5cc2', - 'resources' : { - 'compiler-rt' : 'e3bc4eb7ba8c39a6fe90d6c988927f3c', - 'openmp' : '65dd5863b9b270960a96817e9152b123', - 'libcxx' : '22214c90697636ef960a49aef7c1823a', - 'libcxxabi' : '17518e361e4e228f193dd91e8ef54ba2', - 'clang' : 'ff862793682f714bb7862325b9c06e20', - 'clang-tools-extra' : '3ebc1dc41659fcec3db1b47d81575e06', - 'lldb' : '51e5eb552f777b950bb0ff326e60d5f0', - } - }, - { - 'version' : '3.5.1', - 'md5':'2d3d8004f38852aa679e5945b8ce0b14', - 'resources' : { - 'compiler-rt' : 'd626cfb8a9712cb92b820798ab5bc1f8', - 'openmp' : '121ddb10167d7fc38b1f7e4b029cf059', - 'libcxx' : '406f09b1dab529f3f7879f4d548329d2', - 'libcxxabi' : 'b22c707e8d474a99865ad3c521c3d464', - 'clang' : '93f9532f8f7e6f1d8e5c1116907051cb', - 'clang-tools-extra' : 'f13f31ed3038acadc6fa63fef812a246', - 'lldb' : 'cc5ea8a414c62c33e760517f8929a204', - } - }, - ] + { + 'version': 'trunk', + 'repo': 'http://llvm.org/svn/llvm-project/llvm/trunk', + 'resources': { + 'compiler-rt': 'http://llvm.org/svn/llvm-project/compiler-rt/trunk', + 'openmp': 'http://llvm.org/svn/llvm-project/openmp/trunk', + 'polly': 'http://llvm.org/svn/llvm-project/polly/trunk', + 'libcxx': 'http://llvm.org/svn/llvm-project/libcxx/trunk', + 'libcxxabi': 'http://llvm.org/svn/llvm-project/libcxxabi/trunk', + 'clang': 'http://llvm.org/svn/llvm-project/cfe/trunk', + 'clang-tools-extra': 'http://llvm.org/svn/llvm-project/clang-tools-extra/trunk', + 'lldb': 'http://llvm.org/svn/llvm-project/lldb/trunk', + 'llvm-libunwind': 'http://llvm.org/svn/llvm-project/libunwind/trunk', + } + }, + { + 'version': '3.8.0', + 'md5': '07a7a74f3c6bd65de4702bf941b511a0', + 'resources': { + 'compiler-rt': 'd6fcbe14352ffb708e4d1ac2e48bb025', + 'openmp': '8fd7cc35d48051613cf1e750e9f22e40', + 'polly': '1b3b20f52d34a4024e21a4ea7112caa7', + 'libcxx': 'd6e0bdbbee39f7907ad74fd56d03b88a', + 'libcxxabi': 'bbe6b4d72c7c5978550d370af529bcf7', + 'clang': 'cc99e7019bb74e6459e80863606250c5', + 'clang-tools-extra': 'c2344f50e0eea0b402f0092a80ddc036', + 'lldb': 'a5da35ed9cc8c8817ee854e3dbfba00e', + 'llvm-libunwind': '162ade468607f153cca12be90b5194fa', + } + }, + { + 'version': '3.7.1', + 'md5': 'bf8b3a2c79e61212c5409041dfdbd319', + 'resources': { + 'compiler-rt': '1c6975daf30bb3b0473b53c3a1a6ff01', + 'openmp': 'b4ad08cda4e5c22e42b66062b140438e', + 'polly': '3a2a7367002740881637f4d47bca4dc3', + 'libcxx': 'f9c43fa552a10e14ff53b94d04bea140', + 'libcxxabi': '52d925afac9f97e9dcac90745255c169', + 'clang': '0acd026b5529164197563d135a8fd83e', + 'clang-tools-extra': '5d49ff745037f061a7c86aeb6a24c3d2', + 'lldb': 'a106d8a0d21fc84d76953822fbaf3398', + 'llvm-libunwind': '814bd52c9247c5d04629658fbcb3ab8c', + } + }, + { + 'version': '3.7.0', + 'md5': 'b98b9495e5655a672d6cb83e1a180f8e', + 'resources': { + 'compiler-rt': '383c10affd513026f08936b5525523f5', + 'openmp': 'f482c86fdead50ba246a1a2b0bbf206f', + 'polly': '32f93ffc9cc7e042df22089761558f8b', + 'libcxx': '46aa5175cbe1ad42d6e9c995968e56dd', + 'libcxxabi': '5aa769e2fca79fa5335cfae8f6258772', + 'clang': '8f9d27335e7331cf0a4711e952f21f01', + 'clang-tools-extra': 'd5a87dacb65d981a427a536f6964642e', + 'lldb': 'e5931740400d1dc3e7db4c7ba2ceff68', + 'llvm-libunwind': '9a75392eb7eb8ed5c0840007e212baf5', + } + }, + { + 'version': '3.6.2', + 'md5': '0c1ee3597d75280dee603bae9cbf5cc2', + 'resources': { + 'compiler-rt': 'e3bc4eb7ba8c39a6fe90d6c988927f3c', + 'openmp': '65dd5863b9b270960a96817e9152b123', + 'libcxx': '22214c90697636ef960a49aef7c1823a', + 'libcxxabi': '17518e361e4e228f193dd91e8ef54ba2', + 'clang': 'ff862793682f714bb7862325b9c06e20', + 'clang-tools-extra': '3ebc1dc41659fcec3db1b47d81575e06', + 'lldb': '51e5eb552f777b950bb0ff326e60d5f0', + } + }, + { + 'version': '3.5.1', + 'md5': '2d3d8004f38852aa679e5945b8ce0b14', + 'resources': { + 'compiler-rt': 'd626cfb8a9712cb92b820798ab5bc1f8', + 'openmp': '121ddb10167d7fc38b1f7e4b029cf059', + 'libcxx': '406f09b1dab529f3f7879f4d548329d2', + 'libcxxabi': 'b22c707e8d474a99865ad3c521c3d464', + 'clang': '93f9532f8f7e6f1d8e5c1116907051cb', + 'clang-tools-extra': 'f13f31ed3038acadc6fa63fef812a246', + 'lldb': 'cc5ea8a414c62c33e760517f8929a204', + } + }, + ] for release in releases: - if release['version'] == 'trunk' : + if release['version'] == 'trunk': version(release['version'], svn=release['repo']) for name, repo in release['resources'].items(): @@ -230,18 +249,19 @@ class Llvm(Package): def install(self, spec, prefix): env['CXXFLAGS'] = self.compiler.cxx11_flag - cmake_args = [ arg for arg in std_cmake_args if 'BUILD_TYPE' not in arg ] + cmake_args = [arg for arg in std_cmake_args if 'BUILD_TYPE' not in arg] build_type = 'RelWithDebInfo' if '+debug' in spec else 'Release' cmake_args.extend([ - '..', - '-DCMAKE_BUILD_TYPE=' + build_type, - '-DLLVM_REQUIRES_RTTI:BOOL=ON', - '-DCLANG_DEFAULT_OPENMP_RUNTIME:STRING=libomp', - '-DPYTHON_EXECUTABLE:PATH=%s/bin/python' % spec['python'].prefix ]) + '..', + '-DCMAKE_BUILD_TYPE=' + build_type, + '-DLLVM_REQUIRES_RTTI:BOOL=ON', + '-DCLANG_DEFAULT_OPENMP_RUNTIME:STRING=libomp', + '-DPYTHON_EXECUTABLE:PATH=%s/bin/python' % spec['python'].prefix]) if '+gold' in spec: - cmake_args.append('-DLLVM_BINUTILS_INCDIR=' + os.path.join( spec['binutils'].prefix, 'include')) + cmake_args.append('-DLLVM_BINUTILS_INCDIR=' + + os.path.join(spec['binutils'].prefix, 'include')) if '+polly' in spec: cmake_args.append('-DLINK_POLLY_INTO_TOOLS:Bool=ON') else: @@ -265,7 +285,7 @@ class Llvm(Package): if '+link_dylib' in spec: cmake_args.append('-DLLVM_LINK_LLVM_DYLIB:Bool=ON') - if '+all_targets' not in spec: # all is default on cmake + if '+all_targets' not in spec: # all is default on cmake targets = ['CppBackend', 'NVPTX', 'AMDGPU'] if 'x86' in spec.architecture.target.lower(): targets.append('X86') @@ -279,13 +299,16 @@ class Llvm(Package): 'power' in spec.architecture.target.lower()): targets.append('PowerPC') - cmake_args.append('-DLLVM_TARGETS_TO_BUILD:Bool=' + ';'.join(targets)) + cmake_args.append( + '-DLLVM_TARGETS_TO_BUILD:Bool=' + ';'.join(targets)) - if '+clang' not in spec: + if '+clang' not in spec: if '+clang_extra' in spec: - raise SpackException('The clang_extra variant requires the clang variant to be selected') + raise SpackException( + 'The clang_extra variant requires the `+clang` variant.') if '+lldb' in spec: - raise SpackException('The lldb variant requires the clang variant to be selected') + raise SpackException( + 'The lldb variant requires the `+clang` variant') with working_dir('spack-build', create=True): cmake(*cmake_args) diff --git a/var/spack/repos/builtin/packages/lmdb/package.py b/var/spack/repos/builtin/packages/lmdb/package.py index 79c020b2df..8c6c23d8dc 100644 --- a/var/spack/repos/builtin/packages/lmdb/package.py +++ b/var/spack/repos/builtin/packages/lmdb/package.py @@ -25,12 +25,12 @@ import os from spack import * + class Lmdb(Package): """Read-only mirror of official repo on openldap.org. Issues and pull requests here are ignored. Use OpenLDAP ITS for issues. http://www.openldap.org/software/repo.html""" - homepage = "http://www.openldap.org/software/repo.html" url = "https://github.com/LMDB/lmdb/archive/LMDB_0.9.16.tar.gz" diff --git a/var/spack/repos/builtin/packages/lwgrp/package.py b/var/spack/repos/builtin/packages/lwgrp/package.py index 471098c873..9322d69b9b 100644 --- a/var/spack/repos/builtin/packages/lwgrp/package.py +++ b/var/spack/repos/builtin/packages/lwgrp/package.py @@ -22,9 +22,9 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -import os from spack import * + class Lwgrp(Package): """Thie light-weight group library provides process group representations using O(log N) space and time.""" diff --git a/var/spack/repos/builtin/packages/lwm2/package.py b/var/spack/repos/builtin/packages/lwm2/package.py index 340474b47e..063204b84a 100644 --- a/var/spack/repos/builtin/packages/lwm2/package.py +++ b/var/spack/repos/builtin/packages/lwm2/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Lwm2(Package): """LWM2: Light Weight Measurement Module. This is a PMPI module that can collect a number of time-sliced MPI and POSIX I/O diff --git a/var/spack/repos/builtin/packages/m4/package.py b/var/spack/repos/builtin/packages/m4/package.py index dcb306dcd3..b3bb5e61ce 100644 --- a/var/spack/repos/builtin/packages/m4/package.py +++ b/var/spack/repos/builtin/packages/m4/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class M4(Package): """GNU M4 is an implementation of the traditional Unix macro processor.""" homepage = "https://www.gnu.org/software/m4/m4.html" @@ -33,14 +34,16 @@ class M4(Package): patch('pgi.patch', when='@1.4.17') - variant('sigsegv', default=True, description="Build the libsigsegv dependency") + variant('sigsegv', default=True, + description="Build the libsigsegv dependency") depends_on('libsigsegv', when='+sigsegv') def install(self, spec, prefix): configure_args = [] if 'libsigsegv' in spec: - configure_args.append('--with-libsigsegv-prefix=%s' % spec['libsigsegv'].prefix) + configure_args.append('--with-libsigsegv-prefix=%s' % + spec['libsigsegv'].prefix) else: configure_args.append('--without-libsigsegv-prefix') diff --git a/var/spack/repos/builtin/packages/mbedtls/package.py b/var/spack/repos/builtin/packages/mbedtls/package.py index 13c0ce768f..e1a42c0d9a 100644 --- a/var/spack/repos/builtin/packages/mbedtls/package.py +++ b/var/spack/repos/builtin/packages/mbedtls/package.py @@ -24,17 +24,21 @@ ############################################################################## from spack import * + class Mbedtls(Package): - """ - mbed TLS (formerly known as PolarSSL) makes it trivially easy for developers to include cryptographic and SSL/TLS capabilities in their (embedded) products, facilitating this functionality with a minimal coding footprint. + """mbed TLS (formerly known as PolarSSL) makes it trivially easy for + developers to include cryptographic and SSL/TLS capabilities in + their (embedded) products, facilitating this functionality with a + minimal coding footprint. + """ homepage = "https://tls.mbed.org" url = "https://github.com/ARMmbed/mbedtls/archive/mbedtls-2.2.1.tar.gz" - version('2.2.1' , '73a38f96898d6d03e32f55dd9f9a67be') - version('2.2.0' , 'eaf4586c1ef93ae872e606b6c1203942') - version('2.1.4' , '40cdf67b6c6d92c9cbcfd552d39ea3ae') - version('2.1.3' , '7eb4cf1dfa68578a2c8dbd0b6fa752dd') + version('2.2.1', '73a38f96898d6d03e32f55dd9f9a67be') + version('2.2.0', 'eaf4586c1ef93ae872e606b6c1203942') + version('2.1.4', '40cdf67b6c6d92c9cbcfd552d39ea3ae') + version('2.1.3', '7eb4cf1dfa68578a2c8dbd0b6fa752dd') version('1.3.16', '4144d7320c691f721aeb9e67a1bc38e0') depends_on('cmake', type='build') diff --git a/var/spack/repos/builtin/packages/memaxes/package.py b/var/spack/repos/builtin/packages/memaxes/package.py index 31672abaec..ffad167788 100644 --- a/var/spack/repos/builtin/packages/memaxes/package.py +++ b/var/spack/repos/builtin/packages/memaxes/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Memaxes(Package): """MemAxes is a visualizer for sampled memory trace data.""" diff --git a/var/spack/repos/builtin/packages/mesa/package.py b/var/spack/repos/builtin/packages/mesa/package.py index 3bad17b5cb..299b9a9267 100644 --- a/var/spack/repos/builtin/packages/mesa/package.py +++ b/var/spack/repos/builtin/packages/mesa/package.py @@ -24,13 +24,13 @@ ############################################################################## from spack import * + class Mesa(Package): """Mesa is an open-source implementation of the OpenGL specification - a system for rendering interactive 3D graphics.""" homepage = "http://www.mesa3d.org" url = "ftp://ftp.freedesktop.org/pub/mesa/older-versions/8.x/8.0.5/MesaLib-8.0.5.tar.gz" - # url = "ftp://ftp.freedesktop.org/pub/mesa/10.4.4/MesaLib-10.4.4.tar.gz" # version('10.4.4', '8d863a3c209bf5116b2babfccccc68ce') version('8.0.5', 'cda5d101f43b8784fa60bdeaca4056f2') @@ -50,7 +50,6 @@ class Mesa(Package): # depends_on("libxcb") # depends_on("libxshmfence") - def install(self, spec, prefix): configure("--prefix=%s" % prefix) diff --git a/var/spack/repos/builtin/packages/metis/package.py b/var/spack/repos/builtin/packages/metis/package.py index 2180f2cce2..9f8ed5c9e8 100644 --- a/var/spack/repos/builtin/packages/metis/package.py +++ b/var/spack/repos/builtin/packages/metis/package.py @@ -43,12 +43,16 @@ class Metis(Package): version('5.0.2', 'acb521a4e8c2e6dd559a7f9abd0468c5') version('4.0.3', 'd3848b454532ef18dc83e4fb160d1e10') - variant('shared', default=True, description='Enables the build of shared libraries') - variant('debug', default=False, description='Builds the library in debug mode') + variant('shared', default=True, + description='Enables the build of shared libraries') + variant('debug', default=False, + description='Builds the library in debug mode') variant('gdb', default=False, description='Enables gdb support') - variant('idx64', default=False, description='Use int64_t as default index type') - variant('real64', default=False, description='Use double precision floating point types') + variant('idx64', default=False, + description='Use int64_t as default index type') + variant('real64', default=False, + description='Use double precision floating point types') depends_on('cmake@2.8:', when='@5:', type='build') diff --git a/var/spack/repos/builtin/packages/mfem/package.py b/var/spack/repos/builtin/packages/mfem/package.py index e7a1d96388..fd91f705eb 100644 --- a/var/spack/repos/builtin/packages/mfem/package.py +++ b/var/spack/repos/builtin/packages/mfem/package.py @@ -23,7 +23,9 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import glob, string +import glob +import string + class Mfem(Package): """Free, lightweight, scalable C++ library for finite element methods.""" @@ -31,10 +33,12 @@ class Mfem(Package): homepage = 'http://www.mfem.org' url = 'https://github.com/mfem/mfem' - version('3.2', '2938c3deed4ec4f7fd5b5f5cfe656845282e86e2dcd477d292390058b7b94340', + version('3.2', + '2938c3deed4ec4f7fd5b5f5cfe656845282e86e2dcd477d292390058b7b94340', url='http://goo.gl/Y9T75B', expand=False, preferred=True) - version('3.1', '841ea5cf58de6fae4de0f553b0e01ebaab9cd9c67fa821e8a715666ecf18fc57', + version('3.1', + '841ea5cf58de6fae4de0f553b0e01ebaab9cd9c67fa821e8a715666ecf18fc57', url='http://goo.gl/xrScXn', expand=False) # version('3.1', git='https://github.com/mfem/mfem.git', # commit='dbae60fe32e071989b52efaaf59d7d0eb2a3b574') @@ -71,8 +75,9 @@ class Mfem(Package): if '+suite-sparse' in spec and ('+metis' not in spec or '+lapack' not in spec): raise InstallError('mfem+suite-sparse must be built with ' + - '+metis and +lapack!') - if 'metis@5:' in spec and '%clang' in spec and ('^cmake %gcc' not in spec): + '+metis and +lapack!') + if 'metis@5:' in spec and '%clang' in spec and ( + '^cmake %gcc' not in spec): raise InstallError('To work around CMake bug with clang, must ' + 'build mfem with mfem[+variants] %clang ' + '^cmake %gcc to force CMake to build with gcc') @@ -86,15 +91,17 @@ class Mfem(Package): if '+lapack' in spec: lapack_lib = '-L{0} -llapack -L{1} -lblas'.format( spec['lapack'].prefix.lib, spec['blas'].prefix.lib) - options.extend(['MFEM_USE_LAPACK=YES', - 'LAPACK_OPT=-I%s' % spec['lapack'].prefix.include, - 'LAPACK_LIB=%s' % lapack_lib]) + options.extend([ + 'MFEM_USE_LAPACK=YES', + 'LAPACK_OPT=-I%s' % spec['lapack'].prefix.include, + 'LAPACK_LIB=%s' % lapack_lib]) if '+hypre' in spec: - options.extend(['HYPRE_DIR=%s' % spec['hypre'].prefix, - 'HYPRE_OPT=-I%s' % spec['hypre'].prefix.include, - 'HYPRE_LIB=-L%s' % spec['hypre'].prefix.lib + - ' -lHYPRE']) + options.extend([ + 'HYPRE_DIR=%s' % spec['hypre'].prefix, + 'HYPRE_OPT=-I%s' % spec['hypre'].prefix.include, + 'HYPRE_LIB=-L%s' % spec['hypre'].prefix.lib + + ' -lHYPRE']) if '+metis' in spec: metis_lib = '-L%s -lmetis' % spec['metis'].prefix.lib @@ -102,22 +109,26 @@ class Mfem(Package): metis_str = 'MFEM_USE_METIS_5=YES' else: metis_str = 'MFEM_USE_METIS_5=NO' - options.extend([metis_str, - 'METIS_DIR=%s' % spec['metis'].prefix, - 'METIS_OPT=-I%s' % spec['metis'].prefix.include, - 'METIS_LIB=%s' % metis_lib]) + options.extend([ + metis_str, + 'METIS_DIR=%s' % spec['metis'].prefix, + 'METIS_OPT=-I%s' % spec['metis'].prefix.include, + 'METIS_LIB=%s' % metis_lib]) - if '+mpi' in spec: options.extend(['MFEM_USE_MPI=YES']) + if '+mpi' in spec: + options.extend(['MFEM_USE_MPI=YES']) if '+suite-sparse' in spec: ssp = spec['suite-sparse'].prefix ss_lib = '-L%s' % ssp.lib ss_lib += (' -lumfpack -lcholmod -lcolamd -lamd -lcamd' + - ' -lccolamd -lsuitesparseconfig') + ' -lccolamd -lsuitesparseconfig') no_librt_archs = ['darwin-i686', 'darwin-x86_64'] - no_rt = any(map(lambda a: spec.satisfies('='+a), no_librt_archs)) - if not no_rt: ss_lib += ' -lrt' + no_rt = any(map(lambda a: spec.satisfies('=' + a), + no_librt_archs)) + if not no_rt: + ss_lib += ' -lrt' ss_lib += (' ' + metis_lib + ' ' + lapack_lib) options.extend(['MFEM_USE_SUITESPARSE=YES', @@ -125,10 +136,11 @@ class Mfem(Package): 'SUITESPARSE_OPT=-I%s' % ssp.include, 'SUITESPARSE_LIB=%s' % ss_lib]) - if '+debug' in spec: options.extend(['MFEM_DEBUG=YES']) + if '+debug' in spec: + options.extend(['MFEM_DEBUG=YES']) # Dirty hack to cope with URL redirect - tgz_file = string.split(self.url,'/')[-1] + tgz_file = string.split(self.url, '/')[-1] tar = which('tar') tar('xzvf', tgz_file) cd(glob.glob('mfem*')[0]) @@ -138,12 +150,12 @@ class Mfem(Package): make('all') # Run a small test before installation - args = ['-m', join_path('data','star.mesh'), '--no-visualization'] + args = ['-m', join_path('data', 'star.mesh'), '--no-visualization'] if '+mpi' in spec: Executable(join_path(spec['mpi'].prefix.bin, 'mpirun'))('-np', '4', - join_path('examples','ex1p'), + join_path('examples', 'ex1p'), *args) else: Executable(join_path('examples', 'ex1'))(*args) diff --git a/var/spack/repos/builtin/packages/mpc/package.py b/var/spack/repos/builtin/packages/mpc/package.py index 92eb976f8b..71cacd5dfe 100644 --- a/var/spack/repos/builtin/packages/mpc/package.py +++ b/var/spack/repos/builtin/packages/mpc/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Mpc(Package): """Gnu Mpc is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the diff --git a/var/spack/repos/builtin/packages/mpe2/package.py b/var/spack/repos/builtin/packages/mpe2/package.py index f69ea2d65b..a129d59949 100644 --- a/var/spack/repos/builtin/packages/mpe2/package.py +++ b/var/spack/repos/builtin/packages/mpe2/package.py @@ -24,8 +24,9 @@ ############################################################################## from spack import * + class Mpe2(Package): - """Message Passing Extensions (MPE) -- Parallel, shared X window graphics""" + """Message Passing Extensions (MPE): Parallel, shared X window graphics""" homepage = "http://www.mcs.anl.gov/research/projects/perfvis/software/MPE/" url = "ftp://ftp.mcs.anl.gov/pub/mpi/mpe/mpe2-1.3.0.tar.gz" diff --git a/var/spack/repos/builtin/packages/mpfr/package.py b/var/spack/repos/builtin/packages/mpfr/package.py index ed3926a8ab..5777cd1926 100644 --- a/var/spack/repos/builtin/packages/mpfr/package.py +++ b/var/spack/repos/builtin/packages/mpfr/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Mpfr(Package): """The MPFR library is a C library for multiple-precision floating-point computations with correct rounding.""" diff --git a/var/spack/repos/builtin/packages/mpibash/package.py b/var/spack/repos/builtin/packages/mpibash/package.py index e659663d90..f3feaaaa42 100644 --- a/var/spack/repos/builtin/packages/mpibash/package.py +++ b/var/spack/repos/builtin/packages/mpibash/package.py @@ -22,9 +22,9 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -import os from spack import * + class Mpibash(Package): """Parallel scripting right from the Bourne-Again Shell (Bash)""" homepage = "http://www.ccs3.lanl.gov/~pakin/software/mpibash-4.3.html" diff --git a/var/spack/repos/builtin/packages/mpileaks/package.py b/var/spack/repos/builtin/packages/mpileaks/package.py index 51bc66a0eb..ec4e9b30cc 100644 --- a/var/spack/repos/builtin/packages/mpileaks/package.py +++ b/var/spack/repos/builtin/packages/mpileaks/package.py @@ -24,8 +24,10 @@ ############################################################################## from spack import * + class Mpileaks(Package): - """Tool to detect and report leaked MPI objects like MPI_Requests and MPI_Datatypes.""" + """Tool to detect and report leaked MPI objects like MPI_Requests and + MPI_Datatypes.""" homepage = "https://github.com/hpc/mpileaks" url = "https://github.com/hpc/mpileaks/releases/download/v1.0/mpileaks-1.0.tar.gz" diff --git a/var/spack/repos/builtin/packages/mrnet/package.py b/var/spack/repos/builtin/packages/mrnet/package.py index 3380c7f823..490e99dd83 100644 --- a/var/spack/repos/builtin/packages/mrnet/package.py +++ b/var/spack/repos/builtin/packages/mrnet/package.py @@ -24,34 +24,40 @@ ############################################################################## from spack import * + class Mrnet(Package): """The MRNet Multi-Cast Reduction Network.""" homepage = "http://paradyn.org/mrnet" url = "ftp://ftp.cs.wisc.edu/paradyn/mrnet/mrnet_5.0.1.tar.gz" list_url = "http://ftp.cs.wisc.edu/paradyn/mrnet" - version('5.0.1-2', git='https://github.com/dyninst/mrnet.git', commit='20b1eacfc6d680d9f6472146d2dfaa0f900cc2e9') + version('5.0.1-2', git='https://github.com/dyninst/mrnet.git', + commit='20b1eacfc6d680d9f6472146d2dfaa0f900cc2e9') version('5.0.1', '17f65738cf1b9f9b95647ff85f69ecdd') version('4.1.0', '5a248298b395b329e2371bf25366115c') version('4.0.0', 'd00301c078cba57ef68613be32ceea2f') - # Add a patch that brings mrnet-5.0.1 up to date with the current development tree - # The development tree contains fixes needed for the krell based tools - variant('krellpatch', default=False, description="Build MRNet with krell openspeedshop based patch.") + # Add a patch that brings mrnet-5.0.1 up to date with the current + # development tree The development tree contains fixes needed for the + # krell based tools + variant('krellpatch', default=False, + description="Build MRNet with krell openspeedshop based patch.") patch('krell-5.0.1.patch', when='@5.0.1+krellpatch') - variant('lwthreads', default=False, description="Also build the MRNet LW threadsafe libraries") + variant('lwthreads', default=False, + description="Also build the MRNet LW threadsafe libraries") parallel = False depends_on("boost") def install(self, spec, prefix): - # Build the MRNet LW thread safe libraries when the krelloptions variant is present + # Build the MRNet LW thread safe libraries when the krelloptions + # variant is present if '+lwthreads' in spec: - configure("--prefix=%s" %prefix, "--enable-shared", "--enable-ltwt-threadsafe") + configure("--prefix=%s" % prefix, "--enable-shared", + "--enable-ltwt-threadsafe") else: - configure("--prefix=%s" %prefix, "--enable-shared") + configure("--prefix=%s" % prefix, "--enable-shared") make() make("install") - diff --git a/var/spack/repos/builtin/packages/msgpack-c/package.py b/var/spack/repos/builtin/packages/msgpack-c/package.py index d42ac255d0..9a726e2356 100644 --- a/var/spack/repos/builtin/packages/msgpack-c/package.py +++ b/var/spack/repos/builtin/packages/msgpack-c/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class MsgpackC(Package): """A small, fast binary interchange format convertible to/from JSON""" homepage = "http://www.msgpack.org" diff --git a/var/spack/repos/builtin/packages/mumps/package.py b/var/spack/repos/builtin/packages/mumps/package.py index b85a6d2b94..32bc42a9c3 100644 --- a/var/spack/repos/builtin/packages/mumps/package.py +++ b/var/spack/repos/builtin/packages/mumps/package.py @@ -36,15 +36,24 @@ class Mumps(Package): version('5.0.1', 'b477573fdcc87babe861f62316833db0') - variant('mpi', default=True, description='Activate the compilation of MUMPS with the MPI support') - variant('scotch', default=False, description='Activate Scotch as a possible ordering library') - variant('ptscotch', default=False, description='Activate PT-Scotch as a possible ordering library') - variant('metis', default=False, description='Activate Metis as a possible ordering library') - variant('parmetis', default=False, description='Activate Parmetis as a possible ordering library') - variant('double', default=True, description='Activate the compilation of dmumps') - variant('float', default=True, description='Activate the compilation of smumps') - variant('complex', default=True, description='Activate the compilation of cmumps and/or zmumps') - variant('idx64', default=False, description='Use int64_t/integer*8 as default index type') + variant('mpi', default=True, + description='Compile MUMPS with MPI support') + variant('scotch', default=False, + description='Activate Scotch as a possible ordering library') + variant('ptscotch', default=False, + description='Activate PT-Scotch as a possible ordering library') + variant('metis', default=False, + description='Activate Metis as a possible ordering library') + variant('parmetis', default=False, + description='Activate Parmetis as a possible ordering library') + variant('double', default=True, + description='Activate the compilation of dmumps') + variant('float', default=True, + description='Activate the compilation of smumps') + variant('complex', default=True, + description='Activate the compilation of cmumps and/or zmumps') + variant('idx64', default=False, + description='Use int64_t/integer*8 as default index type') variant('shared', default=True, description='Build shared libraries') depends_on('scotch + esmumps', when='~ptscotch+scotch') @@ -61,8 +70,10 @@ class Mumps(Package): # end before install # def patch(self): def write_makefile_inc(self): - if ('+parmetis' in self.spec or '+ptscotch' in self.spec) and '+mpi' not in self.spec: # NOQA: ignore=E501 - raise RuntimeError('You cannot use the variants parmetis or ptscotch without mpi') # NOQA: ignore=E501 + if ('+parmetis' in self.spec or '+ptscotch' in self.spec) and ( + '+mpi' not in self.spec): + raise RuntimeError( + 'You cannot use the variants parmetis or ptscotch without mpi') makefile_conf = ["LIBBLAS = %s" % to_link_flags( self.spec['blas'].blas_shared_lib) @@ -115,7 +126,7 @@ class Mumps(Package): # the fortran compilation flags most probably are # working only for intel and gnu compilers this is # perhaps something the compiler should provide - ['OPTF = %s -O -DALLOW_NON_INIT %s' % (fpic, '-fdefault-integer-8' if self.compiler.name == "gcc" else '-i8'), # NOQA: ignore=E501 + ['OPTF = %s -O -DALLOW_NON_INIT %s' % (fpic, '-fdefault-integer-8' if self.compiler.name == "gcc" else '-i8'), # noqa 'OPTL = %s -O ' % fpic, 'OPTC = %s -O -DINTSIZE64' % fpic]) else: @@ -148,13 +159,13 @@ class Mumps(Package): # 10.10. Use gfortran. (Homebrew) makefile_conf.extend([ 'LIBEXT=.dylib', - 'AR=%s -dynamiclib -Wl,-install_name -Wl,%s/$(notdir $@) -undefined dynamic_lookup -o ' % (os.environ['FC'], prefix.lib), # NOQA: ignore=E501 + 'AR=%s -dynamiclib -Wl,-install_name -Wl,%s/$(notdir $@) -undefined dynamic_lookup -o ' % (os.environ['FC'], prefix.lib), # noqa 'RANLIB=echo' ]) else: makefile_conf.extend([ 'LIBEXT=.so', - 'AR=$(FL) -shared -Wl,-soname -Wl,%s/$(notdir $@) -o' % prefix.lib, # NOQA: ignore=E501 + 'AR=$(FL) -shared -Wl,-soname -Wl,%s/$(notdir $@) -o' % prefix.lib, # noqa 'RANLIB=echo' ]) else: diff --git a/var/spack/repos/builtin/packages/munge/package.py b/var/spack/repos/builtin/packages/munge/package.py index ebe3e18882..51455006e9 100644 --- a/var/spack/repos/builtin/packages/munge/package.py +++ b/var/spack/repos/builtin/packages/munge/package.py @@ -25,12 +25,14 @@ from spack import * import os + class Munge(Package): """ MUNGE Uid 'N' Gid Emporium """ homepage = "https://code.google.com/p/munge/" url = "https://github.com/dun/munge/releases/download/munge-0.5.11/munge-0.5.11.tar.bz2" - version('0.5.11', 'bd8fca8d5f4c1fcbef1816482d49ee01', url='https://github.com/dun/munge/releases/download/munge-0.5.11/munge-0.5.11.tar.bz2') + version('0.5.11', 'bd8fca8d5f4c1fcbef1816482d49ee01', + url='https://github.com/dun/munge/releases/download/munge-0.5.11/munge-0.5.11.tar.bz2') depends_on('openssl') depends_on('libgcrypt') @@ -41,4 +43,3 @@ class Munge(Package): make() make("install") - diff --git a/var/spack/repos/builtin/packages/muparser/package.py b/var/spack/repos/builtin/packages/muparser/package.py index 47d1855329..1373c8cd7b 100644 --- a/var/spack/repos/builtin/packages/muparser/package.py +++ b/var/spack/repos/builtin/packages/muparser/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Muparser(Package): """C++ math expression parser library.""" homepage = "http://muparser.beltoforion.de/" diff --git a/var/spack/repos/builtin/packages/muster/package.py b/var/spack/repos/builtin/packages/muster/package.py index 64b7324415..81817e48dc 100644 --- a/var/spack/repos/builtin/packages/muster/package.py +++ b/var/spack/repos/builtin/packages/muster/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Muster(Package): """The Muster library provides implementations of sequential and parallel K-Medoids clustering algorithms. It is intended as a diff --git a/var/spack/repos/builtin/packages/mvapich2/package.py b/var/spack/repos/builtin/packages/mvapich2/package.py index 0fa5821b08..17124a0572 100644 --- a/var/spack/repos/builtin/packages/mvapich2/package.py +++ b/var/spack/repos/builtin/packages/mvapich2/package.py @@ -40,7 +40,8 @@ class Mvapich2(Package): provides('mpi@:2.2', when='@1.9') # MVAPICH2-1.9 supports MPI 2.2 provides('mpi@:3.0', when='@2.0:') # MVAPICH2-2.0 supports MPI 3.0 - variant('debug', default=False, description='Enables debug information and error messages at run-time') + variant('debug', default=False, + description='Enable debug info and error messages at run-time') ########## # TODO : Process managers should be grouped into the same variant, @@ -51,10 +52,14 @@ class Mvapich2(Package): GFORKER = 'gforker' REMSHELL = 'remshell' SLURM_INCOMPATIBLE_PMS = (HYDRA, GFORKER, REMSHELL) - variant(SLURM, default=False, description='Sets slurm as the only process manager') - variant(HYDRA, default=False, description='Sets hydra as one of the process managers') - variant(GFORKER, default=False, description='Sets gforker as one of the process managers') - variant(REMSHELL, default=False, description='Sets remshell as one of the process managers') + variant(SLURM, default=False, + description='Set slurm as the only process manager') + variant(HYDRA, default=False, + description='Set hydra as one of the process managers') + variant(GFORKER, default=False, + description='Set gforker as one of the process managers') + variant(REMSHELL, default=False, + description='Set remshell as one of the process managers') ########## ########## @@ -67,12 +72,24 @@ class Mvapich2(Package): NEMESIS = 'nemesis' MRAIL = 'mrail' SUPPORTED_NETWORKS = (PSM, SOCK, NEMESIS, NEMESISIB, NEMESISIBTCP) - variant(PSM, default=False, description='Configures a build for QLogic PSM-CH3') - variant(SOCK, default=False, description='Configures a build for TCP/IP-CH3') - variant(NEMESISIBTCP, default=False, description='Configures a build for both OFA-IB-Nemesis and TCP/IP-Nemesis') - variant(NEMESISIB, default=False, description='Configures a build for OFA-IB-Nemesis') - variant(NEMESIS, default=False, description='Configures a build for TCP/IP-Nemesis') - variant(MRAIL, default=False, description='Configures a build for OFA-IB-CH3') + variant( + PSM, default=False, + description='Configure for QLogic PSM-CH3') + variant( + SOCK, default=False, + description='Configure for TCP/IP-CH3') + variant( + NEMESISIBTCP, default=False, + description='Configure for both OFA-IB-Nemesis and TCP/IP-Nemesis') + variant( + NEMESISIB, default=False, + description='Configure for OFA-IB-Nemesis') + variant( + NEMESIS, default=False, + description='Configure for TCP/IP-Nemesis') + variant( + MRAIL, default=False, + description='Configure for OFA-IB-CH3') ########## # FIXME : CUDA support is missing diff --git a/var/spack/repos/builtin/packages/mxml/package.py b/var/spack/repos/builtin/packages/mxml/package.py index 254a5f1595..113c48c18f 100644 --- a/var/spack/repos/builtin/packages/mxml/package.py +++ b/var/spack/repos/builtin/packages/mxml/package.py @@ -1,3 +1,27 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## from spack import * diff --git a/var/spack/repos/builtin/packages/nag/package.py b/var/spack/repos/builtin/packages/nag/package.py index 63269a50b1..792e3fe3c7 100644 --- a/var/spack/repos/builtin/packages/nag/package.py +++ b/var/spack/repos/builtin/packages/nag/package.py @@ -43,8 +43,8 @@ class Nag(Package): def url_for_version(self, version): # TODO: url and checksum are architecture dependent # TODO: We currently only support x86_64 - return 'http://www.nag.com/downloads/impl/npl6a%sna_amd64.tgz' % \ - str(version).replace('.', '') + return 'http://www.nag.com/downloads/impl/npl6a%sna_amd64.tgz' % str( + version).replace('.', '') def install(self, spec, prefix): # Set installation directories diff --git a/var/spack/repos/builtin/packages/nasm/package.py b/var/spack/repos/builtin/packages/nasm/package.py index c955e6d13e..9faccccaae 100644 --- a/var/spack/repos/builtin/packages/nasm/package.py +++ b/var/spack/repos/builtin/packages/nasm/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Nasm(Package): """NASM (Netwide Assembler) is an 80x86 assembler designed for portability and modularity. It includes a disassembler as well.""" diff --git a/var/spack/repos/builtin/packages/nccmp/package.py b/var/spack/repos/builtin/packages/nccmp/package.py index 68bddd6957..d59ca09381 100644 --- a/var/spack/repos/builtin/packages/nccmp/package.py +++ b/var/spack/repos/builtin/packages/nccmp/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Nccmp(Package): """Compare NetCDF Files""" homepage = "http://nccmp.sourceforge.net/" diff --git a/var/spack/repos/builtin/packages/ncdu/package.py b/var/spack/repos/builtin/packages/ncdu/package.py index 0f2f9cda45..2147319d3f 100644 --- a/var/spack/repos/builtin/packages/ncdu/package.py +++ b/var/spack/repos/builtin/packages/ncdu/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Ncdu(Package): """ Ncdu is a disk usage analyzer with an ncurses interface. It is designed @@ -38,15 +39,15 @@ class Ncdu(Package): version('1.11', '9e44240a5356b029f05f0e70a63c4d12') version('1.10', '7535decc8d54eca811493e82d4bfab2d') - version('1.9' , '93258079db897d28bb8890e2db89b1fb') - version('1.8' , '94d7a821f8a0d7ba8ef3dd926226f7d5') - version('1.7' , '172047c29d232724cc62e773e82e592a') + version('1.9', '93258079db897d28bb8890e2db89b1fb') + version('1.8', '94d7a821f8a0d7ba8ef3dd926226f7d5') + version('1.7', '172047c29d232724cc62e773e82e592a') depends_on("ncurses") def install(self, spec, prefix): configure('--prefix=%s' % prefix, - '--with-ncurses=%s' % spec['ncurses']) + '--with-ncurses=%s' % spec['ncurses']) make() make("install") diff --git a/var/spack/repos/builtin/packages/nco/package.py b/var/spack/repos/builtin/packages/nco/package.py index 4bc4da68e3..16d72b4593 100644 --- a/var/spack/repos/builtin/packages/nco/package.py +++ b/var/spack/repos/builtin/packages/nco/package.py @@ -23,7 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os + class Nco(Package): """The NCO toolkit manipulates and analyzes data stored in @@ -39,9 +39,9 @@ class Nco(Package): depends_on('netcdf') depends_on('antlr@2.7.7+cxx') # (required for ncap2) - depends_on('gsl') # (desirable for ncap2) + depends_on('gsl') # (desirable for ncap2) depends_on('udunits2') # (allows dimensional unit transformations) - # depends_on('opendap') # (enables network transparency), + # depends_on('opendap') # (enables network transparency), def install(self, spec, prefix): opts = [ diff --git a/var/spack/repos/builtin/packages/ncurses/package.py b/var/spack/repos/builtin/packages/ncurses/package.py index 3ab2b0477d..aaacbac7b1 100644 --- a/var/spack/repos/builtin/packages/ncurses/package.py +++ b/var/spack/repos/builtin/packages/ncurses/package.py @@ -24,11 +24,14 @@ ############################################################################## from spack import * + class Ncurses(Package): - """The ncurses (new curses) library is a free software emulation of curses - in System V Release 4.0, and more. It uses terminfo format, supports pads and - color and multiple highlights and forms characters and function-key mapping, - and has all the other SYSV-curses enhancements over BSD curses. + """The ncurses (new curses) library is a free software emulation of + curses in System V Release 4.0, and more. It uses terminfo format, + supports pads and color and multiple highlights and forms + characters and function-key mapping, and has all the other + SYSV-curses enhancements over BSD curses. + """ homepage = "http://invisible-island.net/ncurses/ncurses.html" diff --git a/var/spack/repos/builtin/packages/ncview/package.py b/var/spack/repos/builtin/packages/ncview/package.py index b39e17ca49..f61e6984b5 100644 --- a/var/spack/repos/builtin/packages/ncview/package.py +++ b/var/spack/repos/builtin/packages/ncview/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Ncview(Package): """Simple viewer for NetCDF files.""" homepage = "http://meteora.ucsd.edu/~pierce/ncview_home_page.html" diff --git a/var/spack/repos/builtin/packages/ndiff/package.py b/var/spack/repos/builtin/packages/ndiff/package.py index 3c9dd4054a..dc41add03f 100644 --- a/var/spack/repos/builtin/packages/ndiff/package.py +++ b/var/spack/repos/builtin/packages/ndiff/package.py @@ -24,11 +24,15 @@ ############################################################################## from spack import * + class Ndiff(Package): - """The ndiff tool is a binary utility that compares putatively similar files - while ignoring small numeric differernces. This utility is most often used - to compare files containing a lot of floating-point numeric data that - may be slightly different due to numeric error.""" + """The ndiff tool is a binary utility that compares putatively similar + files while ignoring small numeric differernces. This utility is + most often used to compare files containing a lot of + floating-point numeric data that may be slightly different due to + numeric error. + + """ homepage = "http://ftp.math.utah.edu/pub/ndiff/" url = "http://ftp.math.utah.edu/pub/ndiff/ndiff-2.00.tar.gz" diff --git a/var/spack/repos/builtin/packages/netcdf-cxx/package.py b/var/spack/repos/builtin/packages/netcdf-cxx/package.py index 994c51c0da..2c3ab73309 100644 --- a/var/spack/repos/builtin/packages/netcdf-cxx/package.py +++ b/var/spack/repos/builtin/packages/netcdf-cxx/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class NetcdfCxx(Package): """Deprecated C++ compatibility bindings for NetCDF. These do NOT read or write NetCDF-4 files, and are no longer diff --git a/var/spack/repos/builtin/packages/netcdf/package.py b/var/spack/repos/builtin/packages/netcdf/package.py index ad4ee59640..ab40c14340 100644 --- a/var/spack/repos/builtin/packages/netcdf/package.py +++ b/var/spack/repos/builtin/packages/netcdf/package.py @@ -26,9 +26,11 @@ from spack import * class Netcdf(Package): - """NetCDF is a set of software libraries and self-describing, machine-independent - data formats that support the creation, access, and sharing of array-oriented - scientific data.""" + """NetCDF is a set of software libraries and self-describing, + machine-independent data formats that support the creation, access, + and sharing of array-oriented scientific data. + + """ homepage = "http://www.unidata.ucar.edu/software/netcdf" url = "ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.3.3.tar.gz" @@ -74,18 +76,19 @@ class Netcdf(Package): "--enable-dap" ] - # Make sure Netcdf links against Spack's curl - # Otherwise it may pick up system's curl, which could lead to link errors: - # /usr/lib/x86_64-linux-gnu/libcurl.so: undefined reference to `SSL_CTX_use_certificate_chain_file@OPENSSL_1.0.0' + # Make sure Netcdf links against Spack's curl, otherwise + # otherwise it may pick up system's curl, which can give link + # errors, e.g.: + # undefined reference to `SSL_CTX_use_certificate_chain_file` LIBS.append("-lcurl") CPPFLAGS.append("-I%s" % spec['curl'].prefix.include) - LDFLAGS.append( "-L%s" % spec['curl'].prefix.lib) + LDFLAGS.append("-L%s" % spec['curl'].prefix.lib) if '+mpi' in spec: config_args.append('--enable-parallel4') CPPFLAGS.append("-I%s/include" % spec['hdf5'].prefix) - LDFLAGS.append( "-L%s/lib" % spec['hdf5'].prefix) + LDFLAGS.append("-L%s/lib" % spec['hdf5'].prefix) # HDF4 support # As of NetCDF 4.1.3, "--with-hdf4=..." is no longer a valid option @@ -93,13 +96,13 @@ class Netcdf(Package): if '+hdf4' in spec: config_args.append("--enable-hdf4") CPPFLAGS.append("-I%s/include" % spec['hdf'].prefix) - LDFLAGS.append( "-L%s/lib" % spec['hdf'].prefix) - LIBS.append( "-l%s" % "jpeg") + LDFLAGS.append("-L%s/lib" % spec['hdf'].prefix) + LIBS.append("-l%s" % "jpeg") if 'szip' in spec: CPPFLAGS.append("-I%s/include" % spec['szip'].prefix) - LDFLAGS.append( "-L%s/lib" % spec['szip'].prefix) - LIBS.append( "-l%s" % "sz") + LDFLAGS.append("-L%s/lib" % spec['szip'].prefix) + LIBS.append("-l%s" % "sz") # Fortran support # In version 4.2+, NetCDF-C and NetCDF-Fortran have split. diff --git a/var/spack/repos/builtin/packages/netgauge/package.py b/var/spack/repos/builtin/packages/netgauge/package.py index be9292fabb..b57cdbe5f3 100644 --- a/var/spack/repos/builtin/packages/netgauge/package.py +++ b/var/spack/repos/builtin/packages/netgauge/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Netgauge(Package): """Netgauge is a high-precision network parameter measurement tool. It supports benchmarking of many different network protocols diff --git a/var/spack/repos/builtin/packages/netlib-lapack/package.py b/var/spack/repos/builtin/packages/netlib-lapack/package.py index 70015baf1c..08c94a5c9b 100644 --- a/var/spack/repos/builtin/packages/netlib-lapack/package.py +++ b/var/spack/repos/builtin/packages/netlib-lapack/package.py @@ -26,11 +26,12 @@ from spack import * class NetlibLapack(Package): - """ - LAPACK version 3.X is a comprehensive FORTRAN library that does linear algebra operations including matrix - inversions, least squared solutions to linear sets of equations, eigenvector analysis, singular value - decomposition, etc. It is a very comprehensive and reputable package that has found extensive use in the - scientific community. + """LAPACK version 3.X is a comprehensive FORTRAN library that does + linear algebra operations including matrix inversions, least squared + solutions to linear sets of equations, eigenvector analysis, singular + value decomposition, etc. It is a very comprehensive and reputable + package that has found extensive use in the scientific community. + """ homepage = "http://www.netlib.org/lapack/" url = "http://www.netlib.org/lapack/lapack-3.5.0.tgz" @@ -44,9 +45,11 @@ class NetlibLapack(Package): variant('debug', default=False, description='Activates the Debug build type') variant('shared', default=True, description="Build shared library version") - variant('external-blas', default=False, description='Build lapack with an external blas') + variant('external-blas', default=False, + description='Build lapack with an external blas') - variant('lapacke', default=True, description='Activates the build of the LAPACKE C interface') + variant('lapacke', default=True, + description='Activates the build of the LAPACKE C interface') # virtual dependency provides('blas', when='~external-blas') @@ -55,26 +58,30 @@ class NetlibLapack(Package): depends_on('cmake', type='build') depends_on('blas', when='+external-blas') - def patch(self): # Fix cblas CMakeLists.txt -- has wrong case for subdirectory name. if self.spec.satisfies('@3.6.0:'): - filter_file('${CMAKE_CURRENT_SOURCE_DIR}/CMAKE/', - '${CMAKE_CURRENT_SOURCE_DIR}/cmake/', 'CBLAS/CMakeLists.txt', string=True) + filter_file( + '${CMAKE_CURRENT_SOURCE_DIR}/CMAKE/', + '${CMAKE_CURRENT_SOURCE_DIR}/cmake/', + 'CBLAS/CMakeLists.txt', string=True) def install_one(self, spec, prefix, shared): - cmake_args = ['-DBUILD_SHARED_LIBS:BOOL=%s' % ('ON' if shared else 'OFF'), - '-DCMAKE_BUILD_TYPE:STRING=%s' % ('Debug' if '+debug' in spec else 'Release'), - '-DLAPACKE:BOOL=%s' % ('ON' if '+lapacke' in spec else 'OFF')] + cmake_args = [ + '-DBUILD_SHARED_LIBS:BOOL=%s' % ('ON' if shared else 'OFF'), + '-DCMAKE_BUILD_TYPE:STRING=%s' % ( + 'Debug' if '+debug' in spec else 'Release'), + '-DLAPACKE:BOOL=%s' % ('ON' if '+lapacke' in spec else 'OFF')] if spec.satisfies('@3.6.0:'): - cmake_args.extend(['-DCBLAS=ON']) # always build CBLAS + cmake_args.extend(['-DCBLAS=ON']) # always build CBLAS if '+external-blas' in spec: - # TODO : the mechanism to specify the library should be more general, + # TODO : mechanism to specify the library should be more general, # TODO : but this allows to have an hook to an external blas cmake_args.extend([ '-DUSE_OPTIMIZED_BLAS:BOOL=ON', - '-DBLAS_LIBRARIES:PATH=%s' % join_path(spec['blas'].prefix.lib, 'libblas.a') + '-DBLAS_LIBRARIES:PATH=%s' % join_path( + spec['blas'].prefix.lib, 'libblas.a') ]) cmake_args.extend(std_cmake_args) @@ -85,7 +92,6 @@ class NetlibLapack(Package): make() make("install") - def install(self, spec, prefix): # Always build static libraries. self.install_one(spec, prefix, False) @@ -94,15 +100,17 @@ class NetlibLapack(Package): if '+shared' in spec: self.install_one(spec, prefix, True) - def setup_dependent_package(self, module, dspec): # This is WIP for a prototype interface for virtual packages. # We can update this as more builds start depending on BLAS/LAPACK. - libdir = find_library_path('libblas.a', self.prefix.lib64, self.prefix.lib) + libdir = find_library_path( + 'libblas.a', self.prefix.lib64, self.prefix.lib) self.spec.blas_static_lib = join_path(libdir, 'libblas.a') self.spec.lapack_static_lib = join_path(libdir, 'liblapack.a') if '+shared' in self.spec: - self.spec.blas_shared_lib = join_path(libdir, 'libblas.%s' % dso_suffix) - self.spec.lapack_shared_lib = join_path(libdir, 'liblapack.%s' % dso_suffix) + self.spec.blas_shared_lib = join_path( + libdir, 'libblas.%s' % dso_suffix) + self.spec.lapack_shared_lib = join_path( + libdir, 'liblapack.%s' % dso_suffix) diff --git a/var/spack/repos/builtin/packages/netlib-scalapack/package.py b/var/spack/repos/builtin/packages/netlib-scalapack/package.py index f7733249cf..49b8633209 100644 --- a/var/spack/repos/builtin/packages/netlib-scalapack/package.py +++ b/var/spack/repos/builtin/packages/netlib-scalapack/package.py @@ -39,7 +39,8 @@ class NetlibScalapack(Package): # versions before 2.0.0 are not using cmake and requires blacs as # a separated package - variant('shared', default=True, description='Build the shared library version') + variant('shared', default=True, + description='Build the shared library version') variant('fpic', default=False, description="Build with -fpic compiler option") provides('scalapack') diff --git a/var/spack/repos/builtin/packages/nettle/package.py b/var/spack/repos/builtin/packages/nettle/package.py index 56e4836611..02e9ef5f1e 100644 --- a/var/spack/repos/builtin/packages/nettle/package.py +++ b/var/spack/repos/builtin/packages/nettle/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Nettle(Package): """The Nettle package contains the low-level cryptographic library that is designed to fit easily in many contexts.""" diff --git a/var/spack/repos/builtin/packages/ninja/package.py b/var/spack/repos/builtin/packages/ninja/package.py index e3f3819289..dcd00576dd 100644 --- a/var/spack/repos/builtin/packages/ninja/package.py +++ b/var/spack/repos/builtin/packages/ninja/package.py @@ -25,6 +25,7 @@ from spack import * import os + class Ninja(Package): """ A small, fast Make alternative """ homepage = "https://martine.github.io/ninja/" @@ -35,7 +36,6 @@ class Ninja(Package): extends('python') def install(self, spec, prefix): - sh = which('sh') python('configure.py', '--bootstrap') cp = which('cp') diff --git a/var/spack/repos/builtin/packages/numdiff/package.py b/var/spack/repos/builtin/packages/numdiff/package.py index 97164165e0..fb897f560b 100644 --- a/var/spack/repos/builtin/packages/numdiff/package.py +++ b/var/spack/repos/builtin/packages/numdiff/package.py @@ -25,6 +25,7 @@ from spack import * import sys + class Numdiff(Package): """Numdiff is a little program that can be used to compare putatively similar files line by line and field by field, ignoring small numeric @@ -35,7 +36,7 @@ class Numdiff(Package): version('5.8.1', 'a295eb391f6cb1578209fc6b4f9d994e') - depends_on('gettext', when=sys.platform=='darwin', type='build') + depends_on('gettext', when=sys.platform == 'darwin', type='build') def install(self, spec, prefix): options = ['--prefix=%s' % prefix] diff --git a/var/spack/repos/builtin/packages/oce/package.py b/var/spack/repos/builtin/packages/oce/package.py index 108c8f8a41..4f9f7b2e12 100644 --- a/var/spack/repos/builtin/packages/oce/package.py +++ b/var/spack/repos/builtin/packages/oce/package.py @@ -40,7 +40,8 @@ class Oce(Package): version('0.16.1', '4d591b240c9293e879f50d86a0cb2bb3') version('0.16', '7a4b4df5a104d75a537e25e7dd387eca') - variant('tbb', default=True, description='Build with Intel Threading Building Blocks') + variant('tbb', default=True, + description='Build with Intel Threading Building Blocks') depends_on('cmake@2.8:', type='build') depends_on('tbb', when='+tbb') diff --git a/var/spack/repos/builtin/packages/ompss/package.py b/var/spack/repos/builtin/packages/ompss/package.py index c0848ffd70..02925974ea 100644 --- a/var/spack/repos/builtin/packages/ompss/package.py +++ b/var/spack/repos/builtin/packages/ompss/package.py @@ -26,19 +26,18 @@ from spack import * import os import glob -# working config lines for ompss 14.06 : -#./nanox-0.7/config.log: $ ./configure --prefix=/usr/gapps/exmatex/ompss --with-mcc=/usr/gapps/exmatex/ompss/ --with-hwloc=/usr -#./mcxx-1.99.2/config.log: $ ./configure --prefix=/usr/gapps/exmatex/ompss --with-nanox=/usr/gapps/exmatex/ompss --enable-ompss --with-mpi=/opt/mvapich2-intel-shmem-1.7 --enable-tl-openmp-profile --enable-tl-openmp-intel class Ompss(Package): - """OmpSs is an effort to integrate features from the StarSs - programming model developed by BSC into a single programming - model. In particular, our objective is to extend OpenMP with - new directives to support asynchronous parallelism and - heterogeneity (devices like GPUs). However, it can also be - understood as new directives extending other accelerator based - APIs like CUDA or OpenCL. Our OmpSs environment is built on top - of our Mercurium compiler and Nanos++ runtime system.""" + """OmpSs is an effort to integrate features from the StarSs programming + model developed by BSC into a single programming model. In + particular, our objective is to extend OpenMP with new directives + to support asynchronous parallelism and heterogeneity (devices + like GPUs). However, it can also be understood as new directives + extending other accelerator based APIs like CUDA or OpenCL. Our + OmpSs environment is built on top of our Mercurium compiler and + Nanos++ runtime system. + + """ homepage = "http://pm.bsc.es/" url = "http://pm.bsc.es/sites/default/files/ftp/ompss/releases/ompss-14.10.tar.gz" list_url = 'http://pm.bsc.es/ompss-downloads' @@ -47,7 +46,7 @@ class Ompss(Package): # all dependencies are optional, really depends_on("mpi") - #depends_on("openmp") + # depends_on("openmp") depends_on("hwloc") depends_on("extrae") @@ -61,14 +60,22 @@ class Ompss(Package): openmp_options = ["--enable-tl-openmp-profile"] if spec.satisfies('%intel'): - openmp_options.append( "--enable-tl-openmp-intel" ) + openmp_options.append("--enable-tl-openmp-intel") os.chdir(glob.glob('./nanox-*').pop()) - configure("--prefix=%s" % prefix, "--with-mcc=%s" % prefix, "--with-extrae=%s" % spec['extrae'].prefix, "--with-hwloc=%s" % spec['hwloc'].prefix) + configure("--prefix=%s" % prefix, + "--with-mcc=%s" % prefix, + "--with-extrae=%s" % + spec['extrae'].prefix, + "--with-hwloc=%s" % spec['hwloc'].prefix) make() make("install") os.chdir(glob.glob('../mcxx-*').pop()) - configure("--prefix=%s" % prefix, "--with-nanox=%s" % prefix, "--enable-ompss", "--with-mpi=%s" % mpi.prefix, *openmp_options) + configure("--prefix=%s" % prefix, + "--with-nanox=%s" % prefix, + "--enable-ompss", + "--with-mpi=%s" % mpi.prefix, + *openmp_options) make() make("install") diff --git a/var/spack/repos/builtin/packages/ompt-openmp/package.py b/var/spack/repos/builtin/packages/ompt-openmp/package.py index 800c04ae0e..40159e4c6c 100644 --- a/var/spack/repos/builtin/packages/ompt-openmp/package.py +++ b/var/spack/repos/builtin/packages/ompt-openmp/package.py @@ -24,8 +24,14 @@ ############################################################################## from spack import * + class OmptOpenmp(Package): - """LLVM/Clang OpenMP runtime with OMPT support. This is a fork of the OpenMPToolsInterface/LLVM-openmp fork of the official LLVM OpenMP mirror. This library provides a drop-in replacement of the OpenMP runtimes for GCC, Intel and LLVM/Clang.""" + """LLVM/Clang OpenMP runtime with OMPT support. This is a fork of the + OpenMPToolsInterface/LLVM-openmp fork of the official LLVM OpenMP + mirror. This library provides a drop-in replacement of the OpenMP + runtimes for GCC, Intel and LLVM/Clang. + + """ homepage = "https://github.com/OpenMPToolsInterface/LLVM-openmp" url = "http://github.com/khuck/LLVM-openmp/archive/v0.1.tar.gz" @@ -35,13 +41,9 @@ class OmptOpenmp(Package): def install(self, spec, prefix): with working_dir("runtime/build", create=True): - - # FIXME: Modify the configure line to suit your build system here. - cmake('-DCMAKE_C_COMPILER=%s' % self.compiler.cc, + cmake('-DCMAKE_C_COMPILER=%s' % self.compiler.cc, '-DCMAKE_CXX_COMPILER=%s' % self.compiler.cxx, '-DCMAKE_INSTALL_PREFIX=%s' % prefix, '..', *std_cmake_args) - - # FIXME: Add logic to build and install here make() make("install") diff --git a/var/spack/repos/builtin/packages/openspeedshop/package.py b/var/spack/repos/builtin/packages/openspeedshop/package.py index 4e2694a53c..5e141060b2 100644 --- a/var/spack/repos/builtin/packages/openspeedshop/package.py +++ b/var/spack/repos/builtin/packages/openspeedshop/package.py @@ -22,7 +22,7 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -################################################################################ +########################################################################## # Copyright (c) 2015-2016 Krell Institute. All Rights Reserved. # # This program is free software; you can redistribute it and/or modify it under @@ -38,50 +38,72 @@ # You should have received a copy of the GNU General Public License along with # this program; if not, write to the Free Software Foundation, Inc., 59 Temple # Place, Suite 330, Boston, MA 02111-1307 USA -################################################################################ +########################################################################## from spack import * + class Openspeedshop(Package): - """OpenSpeedShop is a community effort by The Krell Institute with current direct funding from DOEs NNSA. - It builds on top of a broad list of community infrastructures, most notably Dyninst and MRNet from UW, - libmonitor from Rice, and PAPI from UTK. OpenSpeedShop is an open source multi platform Linux performance - tool which is targeted to support performance analysis of applications running on both single node and - large scale IA64, IA32, EM64T, AMD64, PPC, ARM, Blue Gene and Cray platforms. OpenSpeedShop development - is hosted by the Krell Institute. The infrastructure and base components of OpenSpeedShop are released - as open source code primarily under LGPL. + """OpenSpeedShop is a community effort by The Krell Institute with + current direct funding from DOEs NNSA. It builds on top of a broad + list of community infrastructures, most notably Dyninst and MRNet + from UW, libmonitor from Rice, and PAPI from UTK. OpenSpeedShop is an + open source multi platform Linux performance tool which is targeted + to support performance analysis of applications running on both + single node and large scale IA64, IA32, EM64T, AMD64, PPC, ARM, Blue + Gene and Cray platforms. OpenSpeedShop development is hosted by the + Krell Institute. The infrastructure and base components of + OpenSpeedShop are released as open source code primarily under LGPL. + """ homepage = "http://www.openspeedshop.org" - url = "https://github.com/OpenSpeedShop" + url = "https://github.com/OpenSpeedShop" version('2.2', '16cb051179c2038de4e8a845edf1d573') # Use when the git repository is available - version('2.2', branch='master', git='https://github.com/OpenSpeedShop/openspeedshop.git') + version('2.2', branch='master', + git='https://github.com/OpenSpeedShop/openspeedshop.git') # Optional mirror template - #url = "file:/home/jeg/OpenSpeedShop_ROOT/SOURCES/openspeedshop-2.2.tar.gz" - #version('2.2', '643337740dc6c2faca60f42d3620b0e1') + # url="file:/home/jeg/OpenSpeedShop_ROOT/SOURCES/openspeedshop-2.2.tar.gz" + # version('2.2', '643337740dc6c2faca60f42d3620b0e1') parallel = False - variant('offline', default=True, description="build with offline instrumentor enabled.") - variant('cbtf', default=False, description="build with cbtf instrumentor enabled.") - variant('runtime', default=False, description="build only the runtime libraries and collectors.") - variant('frontend', default=False, description="build only the front-end tool using the runtime_dir to point to the target build.") - variant('cuda', default=False, description="build with cuda packages included.") - variant('ptgf', default=False, description="build with the PTGF based gui package enabled.") - variant('rtfe', default=False, description="build for generic cluster platforms that have different processors on the fe and be nodes.") + variant('offline', default=True, + description="build with offline instrumentor enabled.") + variant('cbtf', default=False, + description="build with cbtf instrumentor enabled.") + variant('runtime', default=False, + description="build only the runtime libraries and collectors.") + variant('frontend', default=False, + description="build only the front-end tool using the runtime_dir " + "to point to the target build.") + variant('cuda', default=False, + description="build with cuda packages included.") + variant('ptgf', default=False, + description="build with the PTGF based gui package enabled.") + variant('rtfe', default=False, + description="build for generic cluster platforms that have " + "different processors on the fe and be nodes.") # MPI variants - variant('openmpi', default=False, description="Build mpi experiment collector for openmpi MPI when this variant is enabled.") - variant('mpt', default=False, description="Build mpi experiment collector for SGI MPT MPI when this variant is enabled.") - variant('mvapich2', default=False, description="Build mpi experiment collector for mvapich2 MPI when this variant is enabled.") - variant('mvapich', default=False, description="Build mpi experiment collector for mvapich MPI when this variant is enabled.") - variant('mpich2', default=False, description="Build mpi experiment collector for mpich2 MPI when this variant is enabled.") - variant('mpich', default=False, description="Build mpi experiment collector for mpich MPI when this variant is enabled.") + variant('openmpi', default=False, + description="Build mpi experiment collector for openmpi MPI.") + variant('mpt', default=False, + description="Build mpi experiment collector for SGI MPT MPI.") + variant('mvapich2', default=False, + description="Build mpi experiment collector for mvapich2 MPI.") + variant('mvapich', default=False, + description="Build mpi experiment collector for mvapich MPI.") + variant('mpich2', default=False, + description="Build mpi experiment collector for mpich2 MPI.") + variant('mpich', default=False, + description="Build mpi experiment collector for mpich MPI.") depends_on("cmake@3.0.2", type='build') - # Dependencies for openspeedshop that are common to all the variants of the OpenSpeedShop build + # Dependencies for openspeedshop that are common to all the variants of + # the OpenSpeedShop build depends_on("bison") depends_on("flex") depends_on("binutils@2.24+krellpatch") @@ -111,11 +133,13 @@ class Openspeedshop(Package): depends_on("mrnet@5.0.1:+lwthreads+krellpatch", when='+cbtf') def adjustBuildTypeParams_cmakeOptions(self, spec, cmakeOptions): - # Sets build type parameters into cmakeOptions the options that will enable the cbtf-krell built type settings + # Sets build type parameters into cmakeOptions the options that will + # enable the cbtf-krell built type settings - compile_flags="-O2 -g" + compile_flags = "-O2 -g" BuildTypeOptions = [] - # Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the stdcmakeargs + # Set CMAKE_BUILD_TYPE to what cbtf-krell wants it to be, not the + # stdcmakeargs for word in cmakeOptions[:]: if word.startswith('-DCMAKE_BUILD_TYPE'): cmakeOptions.remove(word) @@ -124,63 +148,64 @@ class Openspeedshop(Package): if word.startswith('-DCMAKE_C_FLAGS'): cmakeOptions.remove(word) BuildTypeOptions.extend([ - '-DCMAKE_BUILD_TYPE=None', - '-DCMAKE_CXX_FLAGS=%s' % compile_flags, - '-DCMAKE_C_FLAGS=%s' % compile_flags + '-DCMAKE_BUILD_TYPE=None', + '-DCMAKE_CXX_FLAGS=%s' % compile_flags, + '-DCMAKE_C_FLAGS=%s' % compile_flags ]) cmakeOptions.extend(BuildTypeOptions) def set_mpi_cmakeOptions(self, spec, cmakeOptions): - # Appends to cmakeOptions the options that will enable the appropriate MPI implementations - + # Appends to cmakeOptions the options that will enable the appropriate + # MPI implementations + MPIOptions = [] # openmpi if '+openmpi' in spec: MPIOptions.extend([ - '-DOPENMPI_DIR=%s' % spec['openmpi'].prefix + '-DOPENMPI_DIR=%s' % spec['openmpi'].prefix ]) # mpich if '+mpich' in spec: MPIOptions.extend([ - '-DMPICH_DIR=%s' % spec['mpich'].prefix + '-DMPICH_DIR=%s' % spec['mpich'].prefix ]) # mpich2 if '+mpich2' in spec: MPIOptions.extend([ - '-DMPICH2_DIR=%s' % spec['mpich2'].prefix + '-DMPICH2_DIR=%s' % spec['mpich2'].prefix ]) # mvapich if '+mvapich' in spec: MPIOptions.extend([ - '-DMVAPICH_DIR=%s' % spec['mvapich'].prefix + '-DMVAPICH_DIR=%s' % spec['mvapich'].prefix ]) # mvapich2 if '+mvapich2' in spec: MPIOptions.extend([ - '-DMVAPICH2_DIR=%s' % spec['mvapich2'].prefix + '-DMVAPICH2_DIR=%s' % spec['mvapich2'].prefix ]) # mpt if '+mpt' in spec: MPIOptions.extend([ - '-DMPT_DIR=%s' % spec['mpt'].prefix + '-DMPT_DIR=%s' % spec['mpt'].prefix ]) cmakeOptions.extend(MPIOptions) - def install(self, spec, prefix): - #openmpi_prefix_path = "/opt/openmpi-1.8.2" - #mvapich_prefix_path = "/usr/local/tools/mvapich-gnu" - #'-DOPENMPI_DIR=%s' % spec['openmpi'].prefix, - #'-DOPENMPI_DIR=%s' % openmpi_prefix_path, - #'-DMVAPICH_DIR=%s' % mvapich_prefix_path, + # openmpi_prefix_path = "/opt/openmpi-1.8.2" + # mvapich_prefix_path = "/usr/local/tools/mvapich-gnu" + # '-DOPENMPI_DIR=%s' % spec['openmpi'].prefix, + # '-DOPENMPI_DIR=%s' % openmpi_prefix_path, + # '-DMVAPICH_DIR=%s' % mvapich_prefix_path, - # FIXME: How do we make this dynamic in spack? That is, can we specify the paths to cuda dynamically? - # WAITING for external package support. - #if '+cuda' in spec: + # FIXME: How do we make this dynamic in spack? + # FIXME: That is, can we specify the paths to cuda dynamically? + # WAITING for external package support. + # if '+cuda' in spec: # cuda_prefix_path = "/usr/local/cuda-6.0" # cupti_prefix_path = "/usr/local/cuda-6.0/extras/CUPTI" @@ -190,19 +215,20 @@ class Openspeedshop(Package): with working_dir('build_runtime', create=True): cmakeOptions = [] - cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix, - '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, - '-DINSTRUMENTOR=%s' % instrumentor_setting, - '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix, - '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix, - '-DPAPI_DIR=%s' % spec['papi'].prefix - ]) - + cmakeOptions.extend([ + '-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, + '-DINSTRUMENTOR=%s' % instrumentor_setting, + '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix, + '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix, + '-DPAPI_DIR=%s' % spec['papi'].prefix]) + # Add any MPI implementations coming from variant settings self.set_mpi_cmakeOptions(spec, cmakeOptions) cmakeOptions.extend(std_cmake_args) - # Adjust the build options to the favored ones for this build + # Adjust the build options to the favored ones for this + # build self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions) cmake('..', *cmakeOptions) @@ -214,43 +240,49 @@ class Openspeedshop(Package): cmake_prefix_path = join_path(spec['dyninst'].prefix) with working_dir('build', create=True): - #python_vers=join_path(spec['python'].version[:2]) - #'-DOPENMPI_DIR=%s' % openmpi_prefix_path, - #'-DMVAPICH_DIR=%s' % mvapich_prefix_path, - #'-DMPICH_DIR=%s' % spec['mpich'].prefix, - #'-DMPICH2_DIR=%s' % spec['mpich2'].prefix, - #'-DBoost_NO_SYSTEM_PATHS=TRUE', - #'-DBOOST_ROOT=%s' % spec['boost'].prefix, - #'-DOPENMPI_DIR=%s' % spec['openmpi'].prefix, + # python_vers=join_path(spec['python'].version[:2]) + # '-DOPENMPI_DIR=%s' % openmpi_prefix_path, + # '-DMVAPICH_DIR=%s' % mvapich_prefix_path, + # '-DMPICH_DIR=%s' % spec['mpich'].prefix, + # '-DMPICH2_DIR=%s' % spec['mpich2'].prefix, + # '-DBoost_NO_SYSTEM_PATHS=TRUE', + # '-DBOOST_ROOT=%s' % spec['boost'].prefix, + # '-DOPENMPI_DIR=%s' % spec['openmpi'].prefix, - python_vers='%d.%d' % spec['python'].version[:2] + python_vers = '%d.%d' % spec['python'].version[:2] cmakeOptions = [] - cmakeOptions.extend(['-DCMAKE_INSTALL_PREFIX=%s' % prefix, - '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, - '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, - '-DINSTRUMENTOR=%s' % instrumentor_setting, - '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, - '-DLIBELF_DIR=%s' % spec['libelf'].prefix, - '-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix, - '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix, - '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix, - '-DPAPI_DIR=%s' % spec['papi'].prefix, - '-DSQLITE3_DIR=%s' % spec['sqlite'].prefix, - '-DQTLIB_DIR=%s' % spec['qt'].prefix, - '-DPYTHON_EXECUTABLE=%s' % join_path(spec['python'].prefix + '/bin/python'), - '-DPYTHON_INCLUDE_DIR=%s' % join_path(spec['python'].prefix.include) + '/python' + python_vers, - '-DPYTHON_LIBRARY=%s' % join_path(spec['python'].prefix.lib) + '/libpython' + python_vers + '.so', - '-DBoost_NO_SYSTEM_PATHS=TRUE', - '-DBOOST_ROOT=%s' % spec['boost'].prefix, - '-DDYNINST_DIR=%s' % spec['dyninst'].prefix - ]) + cmakeOptions.extend([ + '-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, + '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, + '-DINSTRUMENTOR=%s' % instrumentor_setting, + '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, + '-DLIBELF_DIR=%s' % spec['libelf'].prefix, + '-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix, + '-DLIBMONITOR_DIR=%s' % spec['libmonitor'].prefix, + '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix, + '-DPAPI_DIR=%s' % spec['papi'].prefix, + '-DSQLITE3_DIR=%s' % spec['sqlite'].prefix, + '-DQTLIB_DIR=%s' % spec['qt'].prefix, + '-DPYTHON_EXECUTABLE=%s' % join_path( + spec['python'].prefix, '/bin/python'), + '-DPYTHON_INCLUDE_DIR=%s' % join_path( + spec['python'].prefix.include, + 'python' + python_vers), + '-DPYTHON_LIBRARY=%s' % join_path( + spec['python'].prefix.lib, + 'libpython' + python_vers + '.so'), + '-DBoost_NO_SYSTEM_PATHS=TRUE', + '-DBOOST_ROOT=%s' % spec['boost'].prefix, + '-DDYNINST_DIR=%s' % spec['dyninst'].prefix]) # Add any MPI implementations coming from variant settings self.set_mpi_cmakeOptions(spec, cmakeOptions) cmakeOptions.extend(std_cmake_args) - # Adjust the build options to the favored ones for this build + # Adjust the build options to the favored ones for this + # build self.adjustBuildTypeParams_cmakeOptions(spec, cmakeOptions) cmake('..', *cmakeOptions) @@ -261,160 +293,171 @@ class Openspeedshop(Package): elif '+cbtf' in spec: instrumentor_setting = "cbtf" - resolve_symbols = "symtabapi" - cmake_prefix_path = join_path(spec['cbtf'].prefix) + ':' + join_path(spec['cbtf-krell'].prefix) + ':' + join_path(spec['dyninst'].prefix) - #runtime_platform_cray = "cray" - #if '+cray' in spec: + cmake_prefix_path = ':'.join(spec['cbtf'].prefix, + spec['cbtf-krell'].prefix, + spec['dyninst'].prefix) + + # resolve_symbols = "symtabapi" + # runtime_platform_cray = "cray" + # if '+cray' in spec: # if '+runtime' in spec: - # #-DCBTF_KRELL_CN_RUNTIME_DIR=${CBTF_KRELL_CN_INSTALL_DIR} \ - # with working_dir('build_cbtf_cray_runtime', create=True): - # python_vers='%d.%d' % spec['python'].version[:2] - # cmake('..', - # '-DCMAKE_INSTALL_PREFIX=%s' % prefix, - # '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, - # '-DRUNTIME_PLATFORM=%s' % runtime_platform_cray, - # '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, - # '-DRESOLVE_SYMBOLS=%s' % resolve_symbols, - # '-DINSTRUMENTOR=%s' % instrumentor_setting, - # '-DCBTF_DIR=%s' % spec['cbtf'].prefix, - # '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, - # '-DCBTF_KRELL_CN_RUNTIME_DIR=%s' % spec['cbtf-krell'].prefix, - # '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, - # '-DLIBELF_DIR=%s' % spec['libelf'].prefix, - # '-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix, - # '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix, - # '-DPAPI_DIR=%s' % spec['papi'].prefix, - # '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, - # '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, - # '-DMRNET_DIR=%s' % spec['mrnet'].prefix, - # '-DBoost_NO_SYSTEM_PATHS=TRUE', - # '-DBOOST_ROOT=%s' % spec['boost'].prefix, - # *std_cmake_args) + # #-DCBTF_KRELL_CN_RUNTIME_DIR=${CBTF_KRELL_CN_INSTALL_DIR} \ + # with working_dir('build_cbtf_cray_runtime', create=True): + # python_vers='%d.%d' % spec['python'].version[:2] + # cmake('..', + # '-DCMAKE_INSTALL_PREFIX=%s' % prefix, + # '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, + # '-DRUNTIME_PLATFORM=%s' % runtime_platform_cray, + # '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, + # '-DRESOLVE_SYMBOLS=%s' % resolve_symbols, + # '-DINSTRUMENTOR=%s' % instrumentor_setting, + # '-DCBTF_DIR=%s' % spec['cbtf'].prefix, + # '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, + # '-DCBTF_KRELL_CN_RUNTIME_DIR=%s' % spec['cbtf-krell'].prefix, + # '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, + # '-DLIBELF_DIR=%s' % spec['libelf'].prefix, + # '-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix, + # '-DLIBUNWIND_DIR=%s' % spec['libunwind'].prefix, + # '-DPAPI_DIR=%s' % spec['papi'].prefix, + # '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, + # '-DXERCESC_DIR=%s' % spec['xerces-c'].prefix, + # '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + # '-DBoost_NO_SYSTEM_PATHS=TRUE', + # '-DBOOST_ROOT=%s' % spec['boost'].prefix, + # *std_cmake_args) # make("clean") # make() # make("install") - - #elif '+mic' in spec: - # comment out else and shift over the default case below until arch detection is in - #else: + # elif '+mic' in spec: + # comment out else and shift over the default case below + # until arch detection is in else: if '+runtime' in spec: with working_dir('build_cbtf_runtime', create=True): - python_vers='%d.%d' % spec['python'].version[:2] - cmake('..', - '-DCMAKE_INSTALL_PREFIX=%s' % prefix, - '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, - '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, - '-DINSTRUMENTOR=%s' % instrumentor_setting, - '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, - '-DLIBELF_DIR=%s' % spec['libelf'].prefix, - '-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix, - '-DCBTF_DIR=%s' % spec['cbtf'].prefix, - '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, - '-DPYTHON_EXECUTABLE=%s' % join_path(spec['python'].prefix + '/bin/python'), - '-DPYTHON_INCLUDE_DIR=%s' % join_path(spec['python'].prefix.include) + '/python' + python_vers, - '-DPYTHON_LIBRARY=%s' % join_path(spec['python'].prefix.lib) + '/libpython' + python_vers + '.so', - '-DBoost_NO_SYSTEM_PATHS=TRUE', - '-DBOOST_ROOT=%s' % spec['boost'].prefix, - '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, - '-DMRNET_DIR=%s' % spec['mrnet'].prefix, - *std_cmake_args) + python_vers = '%d.%d' % spec['python'].version[:2] + cmake( + '..', + '-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, + '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, + '-DINSTRUMENTOR=%s' % instrumentor_setting, + '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, + '-DLIBELF_DIR=%s' % spec['libelf'].prefix, + '-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix, + '-DCBTF_DIR=%s' % spec['cbtf'].prefix, + '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, + '-DPYTHON_EXECUTABLE=%s' % join_path( + spec['python'].prefix, 'bin', 'python'), + '-DPYTHON_INCLUDE_DIR=%s' % join_path( + spec['python'].prefix.include, + 'python' + python_vers), + '-DPYTHON_LIBRARY=%s' % join_path( + spec['python'].prefix.lib, + 'libpython' + python_vers + '.so'), + '-DBoost_NO_SYSTEM_PATHS=TRUE', + '-DBOOST_ROOT=%s' % spec['boost'].prefix, + '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, + '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + *std_cmake_args) + make("clean") make() make("install") else: with working_dir('build_cbtf', create=True): - python_vers='%d.%d' % spec['python'].version[:2] - #python_vers=join_path(spec['python'].version[:2]) - cmake('..', - '-DCMAKE_INSTALL_PREFIX=%s' % prefix, - '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, - '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, - '-DINSTRUMENTOR=%s' % instrumentor_setting, - '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, - '-DLIBELF_DIR=%s' % spec['libelf'].prefix, - '-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix, - '-DSQLITE3_DIR=%s' % spec['sqlite'].prefix, - '-DCBTF_DIR=%s' % spec['cbtf'].prefix, - '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, - '-DQTLIB_DIR=%s' % spec['qt'].prefix, - '-DPYTHON_EXECUTABLE=%s' % join_path(spec['python'].prefix + '/bin/python'), - '-DPYTHON_INCLUDE_DIR=%s' % join_path(spec['python'].prefix.include) + '/python' + python_vers, - '-DPYTHON_LIBRARY=%s' % join_path(spec['python'].prefix.lib) + '/libpython' + python_vers + '.so', - '-DBoost_NO_SYSTEM_PATHS=TRUE', - '-DBOOST_ROOT=%s' % spec['boost'].prefix, - '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, - '-DMRNET_DIR=%s' % spec['mrnet'].prefix, - *std_cmake_args) + python_vers = '%d.%d' % spec['python'].version[:2] + # python_vers=join_path(spec['python'].version[:2]) + cmake( + '..', + '-DCMAKE_INSTALL_PREFIX=%s' % prefix, + '-DCMAKE_LIBRARY_PATH=%s' % prefix.lib64, + '-DCMAKE_PREFIX_PATH=%s' % cmake_prefix_path, + '-DINSTRUMENTOR=%s' % instrumentor_setting, + '-DBINUTILS_DIR=%s' % spec['binutils'].prefix, + '-DLIBELF_DIR=%s' % spec['libelf'].prefix, + '-DLIBDWARF_DIR=%s' % spec['libdwarf'].prefix, + '-DSQLITE3_DIR=%s' % spec['sqlite'].prefix, + '-DCBTF_DIR=%s' % spec['cbtf'].prefix, + '-DCBTF_KRELL_DIR=%s' % spec['cbtf-krell'].prefix, + '-DQTLIB_DIR=%s' % spec['qt'].prefix, + '-DPYTHON_EXECUTABLE=%s' % join_path( + spec['python'].prefix, 'bin', 'python'), + '-DPYTHON_INCLUDE_DIR=%s' % join_path( + spec['python'].prefix.include, + 'python' + python_vers), + '-DPYTHON_LIBRARY=%s' % join_path( + spec['python'].prefix.lib, + 'libpython' + python_vers + '.so'), + '-DBoost_NO_SYSTEM_PATHS=TRUE', + '-DBOOST_ROOT=%s' % spec['boost'].prefix, + '-DDYNINST_DIR=%s' % spec['dyninst'].prefix, + '-DMRNET_DIR=%s' % spec['mrnet'].prefix, + *std_cmake_args) + make("clean") make() make("install") - #if '+frontend' in spec: - # with working_dir('build_frontend', create=True): - # tbd - - - - #if '+cbtf' in spec: - # if cray build type detected: - # if '+runtime' in spec: - # with working_dir('build_cray_cbtf_compute', create=True): - # tbd - # else: - # with working_dir('build_cray_cbtf_frontend', create=True): - # tbd - # with working_dir('build_cray_osscbtf_frontend', create=True): - # tbd - # fi - # elif '+intelmic' in spec: - # if '+runtime' in spec: - # with working_dir('build_intelmic_cbtf_compute', create=True): - # tbd - # else: - # with working_dir('build_intelmic_cbtf_frontend', create=True): - # tbd - # with working_dir('build_intelmic_osscbtf_frontend', create=True): - # fi - # else - # with working_dir('build_cluster_cbtf', create=True): - # tbd - # with working_dir('build_cluster osscbtf', create=True): - # tbd - # fi - #elif '+offline' in spec: - # if cray build type detected: - # if '+runtime' in spec: - # with working_dir('build_cray_ossoff_compute', create=True): - # tbd - # else: - # with working_dir('build_cray_ossoff_frontend', create=True): - # tbd - # fi - # elif '+intelmic' in spec: - # if '+runtime' in spec: - # with working_dir('build_intelmic_ossoff_compute', create=True): - # tbd - # else: - # with working_dir('build_intelmic_ossoff_frontend', create=True): - # tbd - # fi - # elif bgq build type detected: - # if '+runtime' in spec: - # with working_dir('build_bgq_ossoff_compute', create=True): - # tbd - # else: - # with working_dir('build_bgq_ossoff_frontend', create=True): - # tbd - # fi - # else - # with working_dir('build_cluster ossoff', create=True): - # tbd - # fi - #fi - - - +# if '+frontend' in spec: +# with working_dir('build_frontend', create=True): +# tbd + +# if '+cbtf' in spec: +# if cray build type detected: +# if '+runtime' in spec: +# with working_dir('build_cray_cbtf_compute', create=True): +# tbd +# else: +# with working_dir('build_cray_cbtf_frontend', create=True): +# tbd +# with working_dir('build_cray_osscbtf_frontend', create=True): +# tbd +# fi +# elif '+intelmic' in spec: +# if '+runtime' in spec: +# with working_dir('build_intelmic_cbtf_compute', create=True): +# tbd +# else: +# with working_dir('build_intelmic_cbtf_frontend', create=True): +# tbd +# with working_dir('build_intelmic_osscbtf_frontend', create=True): +# fi +# else +# with working_dir('build_cluster_cbtf', create=True): +# tbd +# with working_dir('build_cluster osscbtf', create=True): +# tbd +# fi +# elif '+offline' in spec: +# if cray build type detected: +# if '+runtime' in spec: +# with working_dir('build_cray_ossoff_compute', create=True): +# tbd +# else: +# with working_dir('build_cray_ossoff_frontend', create=True): +# tbd +# fi +# elif '+intelmic' in spec: +# if '+runtime' in spec: +# with working_dir('build_intelmic_ossoff_compute', create=True): +# tbd +# else: +# with working_dir('build_intelmic_ossoff_frontend', create=True): +# tbd +# fi +# elif bgq build type detected: +# if '+runtime' in spec: +# with working_dir('build_bgq_ossoff_compute', create=True): +# tbd +# else: +# with working_dir('build_bgq_ossoff_frontend', create=True): +# tbd +# fi +# else +# with working_dir('build_cluster ossoff', create=True): +# tbd +# fi +# fi diff --git a/var/spack/repos/builtin/packages/osu-micro-benchmarks/package.py b/var/spack/repos/builtin/packages/osu-micro-benchmarks/package.py index 2104bf842b..161ba6254a 100644 --- a/var/spack/repos/builtin/packages/osu-micro-benchmarks/package.py +++ b/var/spack/repos/builtin/packages/osu-micro-benchmarks/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class OsuMicroBenchmarks(Package): """The Ohio MicroBenchmark suite is a collection of independent MPI message passing performance microbenchmarks developed and written at @@ -41,7 +42,6 @@ class OsuMicroBenchmarks(Package): depends_on('mpi') depends_on('cuda', when='+cuda') - def install(self, spec, prefix): config_args = [ 'CC=%s' % spec['mpi'].prefix.bin + '/mpicc', diff --git a/var/spack/repos/builtin/packages/otf/package.py b/var/spack/repos/builtin/packages/otf/package.py index 4a7a00b212..39eb5a85aa 100644 --- a/var/spack/repos/builtin/packages/otf/package.py +++ b/var/spack/repos/builtin/packages/otf/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Otf(Package): """To improve scalability for very large and massively parallel traces the Open Trace Format (OTF) is developed at ZIH as a diff --git a/var/spack/repos/builtin/packages/otf2/package.py b/var/spack/repos/builtin/packages/otf2/package.py index 131836f8ac..ee39f448eb 100644 --- a/var/spack/repos/builtin/packages/otf2/package.py +++ b/var/spack/repos/builtin/packages/otf2/package.py @@ -27,8 +27,8 @@ from spack import * class Otf2(Package): - """ - The Open Trace Format 2 is a highly scalable, memory efficient event trace data format plus support library. + """The Open Trace Format 2 is a highly scalable, memory efficient event + trace data format plus support library. """ homepage = "http://www.vi-hps.org/score-p" @@ -46,10 +46,10 @@ class Otf2(Package): url="http://www.vi-hps.org/upload/packages/otf2/otf2-1.2.1.tar.gz") def install(self, spec, prefix): - configure_args=["--prefix=%s" % prefix, - "--enable-shared", - "CFLAGS=-fPIC", - "CXXFLAGS=-fPIC"] + configure_args = ["--prefix=%s" % prefix, + "--enable-shared", + "CFLAGS=-fPIC", + "CXXFLAGS=-fPIC"] configure(*configure_args) make() make("install") diff --git a/var/spack/repos/builtin/packages/papi/package.py b/var/spack/repos/builtin/packages/papi/package.py index ecd958407f..5c4abe1730 100644 --- a/var/spack/repos/builtin/packages/papi/package.py +++ b/var/spack/repos/builtin/packages/papi/package.py @@ -28,6 +28,7 @@ import os import sys from llnl.util.filesystem import fix_darwin_install_name + class Papi(Package): """PAPI provides the tool designer and application engineer with a consistent interface and methodology for use of the performance @@ -47,7 +48,7 @@ class Papi(Package): def install(self, spec, prefix): with working_dir("src"): - configure_args=["--prefix=%s" % prefix] + configure_args = ["--prefix=%s" % prefix] # PAPI uses MPI if MPI is present; since we don't require # an MPI package, we ensure that all attempts to use MPI diff --git a/var/spack/repos/builtin/packages/paradiseo/package.py b/var/spack/repos/builtin/packages/paradiseo/package.py index 97d36d94a4..c91b01c964 100644 --- a/var/spack/repos/builtin/packages/paradiseo/package.py +++ b/var/spack/repos/builtin/packages/paradiseo/package.py @@ -23,40 +23,50 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import sys + class Paradiseo(Package): - """A C++ white-box object-oriented framework dedicated to the reusable design of metaheuristics.""" + """A C++ white-box object-oriented framework dedicated to the reusable + design of metaheuristics.""" homepage = "http://paradiseo.gforge.inria.fr/" - # Installing from the development version is a better option at this + # Installing from the development version is a better option at this # point than using the very old supplied packages version('head', git='https://gforge.inria.fr/git/paradiseo/paradiseo.git') - # This is a version that the package formula author has tested successfully. - # However, the clone is very large (~1Gb git history). The history in the - # head version has been trimmed significantly. - version('dev-safe', git='https://gforge.inria.fr/git/paradiseo/paradiseo.git', - commit='dbb8fbe9a786efd4d1c26408ac1883442e7643a6') - variant('mpi', default=True, description='Compile with parallel and distributed metaheuristics module') - variant('smp', default=True, description='Compile with symmetric multi-processing module ') - variant('edo', default=True, description='Compile with (Experimental) EDO module') - #variant('tests', default=False, description='Compile with build tests') - #variant('doc', default=False, description='Compile with documentation') - variant('debug', default=False, description='Builds a debug version of the libraries') + # This is a version that the package formula author has tested + # successfully. However, the clone is very large (~1Gb git + # history). The history in the head version has been trimmed + # significantly. + version( + 'dev-safe', git='https://gforge.inria.fr/git/paradiseo/paradiseo.git', + commit='dbb8fbe9a786efd4d1c26408ac1883442e7643a6') + + variant('mpi', default=True, + description='Compile with parallel and distributed ' + 'metaheuristics module') + variant('smp', default=True, + description='Compile with symmetric multi-processing module ') + variant('edo', default=True, + description='Compile with (Experimental) EDO module') + + # variant('tests', default=False, description='Compile with build tests') + # variant('doc', default=False, description='Compile with documentation') + variant('debug', default=False, + description='Builds a debug version of the libraries') variant('openmp', default=False, description='Enable OpenMP support') variant('gnuplot', default=False, description='Enable GnuPlot support') - + # Required dependencies - depends_on ("cmake", type='build') + depends_on("cmake", type='build') # Optional dependencies - depends_on ("mpi", when="+mpi") - depends_on ("doxygen", when='+doc', type='build') - depends_on ("gnuplot", when='+gnuplot') - depends_on ("eigen", when='+edo', type='build') - depends_on ("boost~mpi", when='+edo~mpi') - depends_on ("boost+mpi", when='+edo+mpi') + depends_on("mpi", when="+mpi") + depends_on("doxygen", when='+doc', type='build') + depends_on("gnuplot", when='+gnuplot') + depends_on("eigen", when='+edo', type='build') + depends_on("boost~mpi", when='+edo~mpi') + depends_on("boost+mpi", when='+edo+mpi') # Patches patch('enable_eoserial.patch') @@ -69,16 +79,21 @@ class Paradiseo(Package): options.extend(std_cmake_args) options.extend([ - '-DCMAKE_BUILD_TYPE:STRING=%s' % ('Debug' if '+debug' in spec else 'Release'), + '-DCMAKE_BUILD_TYPE:STRING=%s' % ( + 'Debug' if '+debug' in spec else 'Release'), '-DINSTALL_TYPE:STRING=MIN', '-DMPI:BOOL=%s' % ('TRUE' if '+mpi' in spec else 'FALSE'), - '-DSMP:BOOL=%s' % ('TRUE' if '+smp' in spec else 'FALSE'), # Note: This requires a C++11 compatible compiler + # Note: This requires a C++11 compatible compiler + '-DSMP:BOOL=%s' % ('TRUE' if '+smp' in spec else 'FALSE'), '-DEDO:BOOL=%s' % ('TRUE' if '+edo' in spec else 'FALSE'), - '-DENABLE_CMAKE_TESTING:BOOL=%s' % ('TRUE' if '+tests' in spec else 'FALSE'), - '-DENABLE_OPENMP:BOOL=%s' % ('TRUE' if '+openmp' in spec else 'FALSE'), - '-DENABLE_GNUPLOT:BOOL=%s' % ('TRUE' if '+gnuplot' in spec else 'FALSE') + '-DENABLE_CMAKE_TESTING:BOOL=%s' % ( + 'TRUE' if '+tests' in spec else 'FALSE'), + '-DENABLE_OPENMP:BOOL=%s' % ( + 'TRUE' if '+openmp' in spec else 'FALSE'), + '-DENABLE_GNUPLOT:BOOL=%s' % ( + 'TRUE' if '+gnuplot' in spec else 'FALSE') ]) - + with working_dir('spack-build', create=True): # Configure cmake('..', *options) diff --git a/var/spack/repos/builtin/packages/parallel-netcdf/package.py b/var/spack/repos/builtin/packages/parallel-netcdf/package.py index deee46df8f..be4a8bc38b 100644 --- a/var/spack/repos/builtin/packages/parallel-netcdf/package.py +++ b/var/spack/repos/builtin/packages/parallel-netcdf/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class ParallelNetcdf(Package): """Parallel netCDF (PnetCDF) is a library providing high-performance parallel I/O while still maintaining file-format compatibility with @@ -37,12 +38,14 @@ class ParallelNetcdf(Package): variant('cxx', default=True, description='Build the C++ Interface') variant('fortran', default=True, description='Build the Fortran Interface') - variant('fpic', default=True, description='Produce position-independent code (for use with shared libraries)') + variant('fpic', default=True, + description='Produce position-independent code (for shared libs)') depends_on("m4", type='build') depends_on("mpi") - # See: https://trac.mcs.anl.gov/projects/parallel-netcdf/browser/trunk/INSTALL + # See: + # https://trac.mcs.anl.gov/projects/parallel-netcdf/browser/trunk/INSTALL def install(self, spec, prefix): args = list() if '+fpic' in spec: @@ -53,7 +56,7 @@ class ParallelNetcdf(Package): args.append('--disable-fortran') args.extend(["--prefix=%s" % prefix, - "--with-mpi=%s" % spec['mpi'].prefix]) + "--with-mpi=%s" % spec['mpi'].prefix]) configure(*args) make() make("install") diff --git a/var/spack/repos/builtin/packages/paraver/package.py b/var/spack/repos/builtin/packages/paraver/package.py index 50ce6b79fb..1b6e3ce8e6 100644 --- a/var/spack/repos/builtin/packages/paraver/package.py +++ b/var/spack/repos/builtin/packages/paraver/package.py @@ -25,6 +25,7 @@ from spack import * import os + class Paraver(Package): """"A very powerful performance visualization and analysis tool based on traces that can be used to analyse any information that @@ -36,7 +37,7 @@ class Paraver(Package): version('4.5.3', '625de9ec0d639acd18d1aaa644b38f72') depends_on("boost") - #depends_on("extrae") + # depends_on("extrae") depends_on("wx") depends_on("wxpropgrid") @@ -47,8 +48,11 @@ class Paraver(Package): make("install") os.chdir("../paraver-kernel") - #"--with-extrae=%s" % spec['extrae'].prefix, - configure("--prefix=%s" % prefix, "--with-ptools-common-files=%s" % prefix, "--with-boost=%s" % spec['boost'].prefix, "--with-boost-serialization=boost_serialization") + # "--with-extrae=%s" % spec['extrae'].prefix, + configure("--prefix=%s" % prefix, + "--with-ptools-common-files=%s" % prefix, + "--with-boost=%s" % spec['boost'].prefix, + "--with-boost-serialization=boost_serialization") make() make("install") @@ -58,8 +62,11 @@ class Paraver(Package): make("install") os.chdir("../wxparaver") - #"--with-extrae=%s" % spec['extrae'].prefix, - configure("--prefix=%s" % prefix, "--with-paraver=%s" % prefix, "--with-boost=%s" % spec['boost'].prefix, "--with-boost-serialization=boost_serialization", "--with-wxdir=%s" % spec['wx'].prefix.bin) + # "--with-extrae=%s" % spec['extrae'].prefix, + configure("--prefix=%s" % prefix, + "--with-paraver=%s" % prefix, + "--with-boost=%s" % spec['boost'].prefix, + "--with-boost-serialization=boost_serialization", + "--with-wxdir=%s" % spec['wx'].prefix.bin) make() make("install") - diff --git a/var/spack/repos/builtin/packages/paraview/package.py b/var/spack/repos/builtin/packages/paraview/package.py index 75f5272006..68c781734e 100644 --- a/var/spack/repos/builtin/packages/paraview/package.py +++ b/var/spack/repos/builtin/packages/paraview/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Paraview(Package): homepage = 'http://www.paraview.org' url = 'http://www.paraview.org/files/v5.0/ParaView-v' @@ -52,23 +53,22 @@ class Paraview(Package): depends_on('cmake', type='build') depends_on('bzip2') depends_on('freetype') - #depends_on('hdf5+mpi', when='+mpi') - #depends_on('hdf5~mpi', when='~mpi') + # depends_on('hdf5+mpi', when='+mpi') + # depends_on('hdf5~mpi', when='~mpi') depends_on('jpeg') depends_on('libpng') depends_on('libtiff') depends_on('libxml2') - #depends_on('netcdf') - #depends_on('netcdf-cxx') - #depends_on('protobuf') # version mismatches? - #depends_on('sqlite') # external version not supported + # depends_on('netcdf') + # depends_on('netcdf-cxx') + # depends_on('protobuf') # version mismatches? + # depends_on('sqlite') # external version not supported depends_on('zlib') def url_for_version(self, version): """Handle ParaView version-based custom URLs.""" return self._url_str % (version.up_to(2), version) - def install(self, spec, prefix): with working_dir('spack-build', create=True): def feature_to_bool(feature, on='ON', off='OFF'): @@ -80,34 +80,46 @@ class Paraview(Package): return feature_to_bool(feature, on='OFF', off='ON') feature_args = std_cmake_args[:] - feature_args.append('-DPARAVIEW_BUILD_QT_GUI:BOOL=%s' % feature_to_bool('+qt')) - feature_args.append('-DPARAVIEW_ENABLE_PYTHON:BOOL=%s' % feature_to_bool('+python')) + feature_args.append( + '-DPARAVIEW_BUILD_QT_GUI:BOOL=%s' % feature_to_bool('+qt')) + feature_args.append('-DPARAVIEW_ENABLE_PYTHON:BOOL=%s' % + feature_to_bool('+python')) if '+python' in spec: - feature_args.append('-DPYTHON_EXECUTABLE:FILEPATH=%s/bin/python' % spec['python'].prefix) - feature_args.append('-DPARAVIEW_USE_MPI:BOOL=%s' % feature_to_bool('+mpi')) + feature_args.append( + '-DPYTHON_EXECUTABLE:FILEPATH=%s/bin/python' + % spec['python'].prefix) + feature_args.append('-DPARAVIEW_USE_MPI:BOOL=%s' % + feature_to_bool('+mpi')) if '+mpi' in spec: - feature_args.append('-DMPIEXEC:FILEPATH=%s/bin/mpiexec' % spec['mpi'].prefix) - feature_args.append('-DVTK_ENABLE_TCL_WRAPPING:BOOL=%s' % feature_to_bool('+tcl')) - feature_args.append('-DVTK_OPENGL_HAS_OSMESA:BOOL=%s' % feature_to_bool('+osmesa')) - feature_args.append('-DVTK_USE_X:BOOL=%s' % nfeature_to_bool('+osmesa')) - feature_args.append('-DVTK_RENDERING_BACKEND:STRING=%s' % feature_to_bool('+opengl2', 'OpenGL2', 'OpenGL')) + feature_args.append( + '-DMPIEXEC:FILEPATH=%s/bin/mpiexec' % spec['mpi'].prefix) + feature_args.append( + '-DVTK_ENABLE_TCL_WRAPPING:BOOL=%s' % feature_to_bool('+tcl')) + feature_args.append('-DVTK_OPENGL_HAS_OSMESA:BOOL=%s' % + feature_to_bool('+osmesa')) + feature_args.append('-DVTK_USE_X:BOOL=%s' % + nfeature_to_bool('+osmesa')) + feature_args.append( + '-DVTK_RENDERING_BACKEND:STRING=%s' % + feature_to_bool('+opengl2', 'OpenGL2', 'OpenGL')) feature_args.extend(std_cmake_args) if 'darwin' in self.spec.architecture: feature_args.append('-DVTK_USE_X:BOOL=OFF') - feature_args.append('-DPARAVIEW_DO_UNIX_STYLE_INSTALLS:BOOL=ON') + feature_args.append( + '-DPARAVIEW_DO_UNIX_STYLE_INSTALLS:BOOL=ON') cmake('..', - '-DCMAKE_INSTALL_PREFIX:PATH=%s' % prefix, - '-DBUILD_TESTING:BOOL=OFF', - '-DVTK_USE_SYSTEM_FREETYPE:BOOL=ON', - '-DVTK_USE_SYSTEM_HDF5:BOOL=OFF', - '-DVTK_USE_SYSTEM_JPEG:BOOL=ON', - '-DVTK_USE_SYSTEM_LIBXML2:BOOL=ON', - '-DVTK_USE_SYSTEM_NETCDF:BOOL=OFF', - '-DVTK_USE_SYSTEM_TIFF:BOOL=ON', - '-DVTK_USE_SYSTEM_ZLIB:BOOL=ON', - *feature_args) + '-DCMAKE_INSTALL_PREFIX:PATH=%s' % prefix, + '-DBUILD_TESTING:BOOL=OFF', + '-DVTK_USE_SYSTEM_FREETYPE:BOOL=ON', + '-DVTK_USE_SYSTEM_HDF5:BOOL=OFF', + '-DVTK_USE_SYSTEM_JPEG:BOOL=ON', + '-DVTK_USE_SYSTEM_LIBXML2:BOOL=ON', + '-DVTK_USE_SYSTEM_NETCDF:BOOL=OFF', + '-DVTK_USE_SYSTEM_TIFF:BOOL=ON', + '-DVTK_USE_SYSTEM_ZLIB:BOOL=ON', + *feature_args) make() make('install') diff --git a/var/spack/repos/builtin/packages/parmetis/package.py b/var/spack/repos/builtin/packages/parmetis/package.py index b2ceadc128..d1cfa27f3a 100644 --- a/var/spack/repos/builtin/packages/parmetis/package.py +++ b/var/spack/repos/builtin/packages/parmetis/package.py @@ -38,8 +38,10 @@ class Parmetis(Package): version('4.0.3', 'f69c479586bf6bb7aff6a9bc0c739628') version('4.0.2', '0912a953da5bb9b5e5e10542298ffdce') - variant('shared', default=True, description='Enables the build of shared libraries') - variant('debug', default=False, description='Builds the library in debug mode') + variant('shared', default=True, + description='Enables the build of shared libraries') + variant('debug', default=False, + description='Builds the library in debug mode') variant('gdb', default=False, description='Enables gdb support') depends_on('cmake@2.8:', type='build') # build dependency diff --git a/var/spack/repos/builtin/packages/parpack/package.py b/var/spack/repos/builtin/packages/parpack/package.py index 5930dada85..84bc88b3b0 100644 --- a/var/spack/repos/builtin/packages/parpack/package.py +++ b/var/spack/repos/builtin/packages/parpack/package.py @@ -26,6 +26,7 @@ from spack import * import os import shutil + class Parpack(Package): """ARPACK is a collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.""" @@ -52,13 +53,13 @@ class Parpack(Package): mf.filter('^PLAT.*', 'PLAT = ') mf.filter('^home.*', 'home = %s' % os.getcwd()) mf.filter('^BLASdir.*', 'BLASdir = %s' % self.spec['blas'].prefix) - mf.filter('^LAPACKdir.*', 'LAPACKdir = %s' % self.spec['lapack'].prefix) + mf.filter('^LAPACKdir.*', 'LAPACKdir = %s' % + self.spec['lapack'].prefix) mf.filter('^MAKE.*', 'MAKE = make') # build the library in our own prefix. mf.filter('^ARPACKLIB.*', 'PARPACKLIB = %s/libparpack.a' % os.getcwd()) - def install(self, spec, prefix): with working_dir('PARPACK/SRC/MPI'): make('all') diff --git a/var/spack/repos/builtin/packages/patchelf/package.py b/var/spack/repos/builtin/packages/patchelf/package.py index 3860875bcc..cd1f679062 100644 --- a/var/spack/repos/builtin/packages/patchelf/package.py +++ b/var/spack/repos/builtin/packages/patchelf/package.py @@ -24,8 +24,10 @@ ############################################################################## from spack import * + class Patchelf(Package): - """PatchELF is a small utility to modify the dynamic linker and RPATH of ELF executables.""" + """PatchELF is a small utility to modify the dynamic linker and RPATH of + ELF executables.""" homepage = "https://nixos.org/patchelf.html" url = "http://nixos.org/releases/patchelf/patchelf-0.8/patchelf-0.8.tar.gz" diff --git a/var/spack/repos/builtin/packages/pcre2/package.py b/var/spack/repos/builtin/packages/pcre2/package.py index b013685f05..a2739e0584 100644 --- a/var/spack/repos/builtin/packages/pcre2/package.py +++ b/var/spack/repos/builtin/packages/pcre2/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Pcre2(Package): """The PCRE2 package contains Perl Compatible Regular Expression libraries. These are useful for implementing regular expression diff --git a/var/spack/repos/builtin/packages/pdt/package.py b/var/spack/repos/builtin/packages/pdt/package.py index 32611a7b14..074d28540b 100644 --- a/var/spack/repos/builtin/packages/pdt/package.py +++ b/var/spack/repos/builtin/packages/pdt/package.py @@ -27,11 +27,13 @@ from spack import * class Pdt(Package): - """ - Program Database Toolkit (PDT) is a framework for analyzing source code written in several programming languages - and for making rich program knowledge accessible to developers of static and dynamic analysis tools. PDT implements - a standard program representation, the program database (PDB), that can be accessed in a uniform way through a - class library supporting common PDB operations. + """Program Database Toolkit (PDT) is a framework for analyzing source + code written in several programming languages and for making rich + program knowledge accessible to developers of static and dynamic + analysis tools. PDT implements a standard program representation, + the program database (PDB), that can be accessed in a uniform way + through a class library supporting common PDB operations. + """ homepage = "https://www.cs.uoregon.edu/research/pdt/home.php" diff --git a/var/spack/repos/builtin/packages/petsc/package.py b/var/spack/repos/builtin/packages/petsc/package.py index 11f5c36c22..079e0b7af4 100644 --- a/var/spack/repos/builtin/packages/petsc/package.py +++ b/var/spack/repos/builtin/packages/petsc/package.py @@ -44,18 +44,25 @@ class Petsc(Package): version('3.5.1', 'a557e029711ebf425544e117ffa44d8f') version('3.4.4', '7edbc68aa6d8d6a3295dd5f6c2f6979d') - variant('shared', default=True, description='Enables the build of shared libraries') + variant('shared', default=True, + description='Enables the build of shared libraries') variant('mpi', default=True, description='Activates MPI support') - variant('double', default=True, description='Switches between single and double precision') + variant('double', default=True, + description='Switches between single and double precision') variant('complex', default=False, description='Build with complex numbers') variant('debug', default=False, description='Compile in debug mode') - variant('metis', default=True, description='Activates support for metis and parmetis') - variant('hdf5', default=True, description='Activates support for HDF5 (only parallel)') + variant('metis', default=True, + description='Activates support for metis and parmetis') + variant('hdf5', default=True, + description='Activates support for HDF5 (only parallel)') variant('boost', default=True, description='Activates support for Boost') - variant('hypre', default=True, description='Activates support for Hypre (only parallel)') - variant('mumps', default=True, description='Activates support for MUMPS (only parallel)') - variant('superlu-dist', default=True, description='Activates support for SuperluDist (only parallel)') + variant('hypre', default=True, + description='Activates support for Hypre (only parallel)') + variant('mumps', default=True, + description='Activates support for MUMPS (only parallel)') + variant('superlu-dist', default=True, + description='Activates support for SuperluDist (only parallel)') # Virtual dependencies depends_on('blas') diff --git a/var/spack/repos/builtin/packages/pidx/package.py b/var/spack/repos/builtin/packages/pidx/package.py index e7b18ce7a8..e19bb9e470 100644 --- a/var/spack/repos/builtin/packages/pidx/package.py +++ b/var/spack/repos/builtin/packages/pidx/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Pidx(Package): """PIDX Parallel I/O Library. diff --git a/var/spack/repos/builtin/packages/pixman/package.py b/var/spack/repos/builtin/packages/pixman/package.py index 34d8dfea0d..3d7e332a3f 100644 --- a/var/spack/repos/builtin/packages/pixman/package.py +++ b/var/spack/repos/builtin/packages/pixman/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Pixman(Package): """The Pixman package contains a library that provides low-level pixel manipulation features such as image compositing and diff --git a/var/spack/repos/builtin/packages/pmgr_collective/package.py b/var/spack/repos/builtin/packages/pmgr_collective/package.py index a6e3b8e2a2..f6466a7954 100644 --- a/var/spack/repos/builtin/packages/pmgr_collective/package.py +++ b/var/spack/repos/builtin/packages/pmgr_collective/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PmgrCollective(Package): """PMGR_COLLECTIVE provides a scalable network for bootstrapping MPI jobs.""" diff --git a/var/spack/repos/builtin/packages/ppl/package.py b/var/spack/repos/builtin/packages/ppl/package.py index a54c6ce221..73404103f0 100644 --- a/var/spack/repos/builtin/packages/ppl/package.py +++ b/var/spack/repos/builtin/packages/ppl/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Ppl(Package): """The Parma Polyhedra Library (PPL) provides numerical abstractions especially targeted at applications in the field of diff --git a/var/spack/repos/builtin/packages/proj/package.py b/var/spack/repos/builtin/packages/proj/package.py index 20dd4f5f69..06ab6108b6 100644 --- a/var/spack/repos/builtin/packages/proj/package.py +++ b/var/spack/repos/builtin/packages/proj/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Proj(Package): """Cartographic Projections""" homepage = "https://github.com/OSGeo/proj.4/wiki" diff --git a/var/spack/repos/builtin/packages/protobuf/package.py b/var/spack/repos/builtin/packages/protobuf/package.py index d4befc34ab..bf0073b16a 100644 --- a/var/spack/repos/builtin/packages/protobuf/package.py +++ b/var/spack/repos/builtin/packages/protobuf/package.py @@ -22,9 +22,9 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -import os from spack import * + class Protobuf(Package): """Google's data interchange format.""" diff --git a/var/spack/repos/builtin/packages/psi4/package.py b/var/spack/repos/builtin/packages/psi4/package.py index 192dd86e0e..6296d0cee6 100644 --- a/var/spack/repos/builtin/packages/psi4/package.py +++ b/var/spack/repos/builtin/packages/psi4/package.py @@ -39,7 +39,15 @@ class Psi4(Package): # Required dependencies depends_on('blas') depends_on('lapack') - depends_on('boost+chrono+filesystem+python+regex+serialization+system+timer+thread') + depends_on('boost' + '+chrono' + '+filesystem' + '+python' + '+regex' + '+serialization' + '+system' + '+timer' + '+thread') depends_on('python') depends_on('cmake', type='build') depends_on('py-numpy', type=nolink) diff --git a/var/spack/repos/builtin/packages/py-SQLAlchemy/package.py b/var/spack/repos/builtin/packages/py-SQLAlchemy/package.py index 05f4616ff5..ca59105b4c 100644 --- a/var/spack/repos/builtin/packages/py-SQLAlchemy/package.py +++ b/var/spack/repos/builtin/packages/py-SQLAlchemy/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PySqlalchemy(Package): """The Python SQL Toolkit and Object Relational Mapper""" diff --git a/var/spack/repos/builtin/packages/py-argcomplete/package.py b/var/spack/repos/builtin/packages/py-argcomplete/package.py index ace9320424..2549972a6d 100644 --- a/var/spack/repos/builtin/packages/py-argcomplete/package.py +++ b/var/spack/repos/builtin/packages/py-argcomplete/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyArgcomplete(Package): """Bash tab completion for argparse.""" diff --git a/var/spack/repos/builtin/packages/py-astroid/package.py b/var/spack/repos/builtin/packages/py-astroid/package.py index e1ea71fb67..a47b7ffa33 100644 --- a/var/spack/repos/builtin/packages/py-astroid/package.py +++ b/var/spack/repos/builtin/packages/py-astroid/package.py @@ -43,4 +43,3 @@ class PyAstroid(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - diff --git a/var/spack/repos/builtin/packages/py-autopep8/package.py b/var/spack/repos/builtin/packages/py-autopep8/package.py index 507664949b..f6c08e2728 100644 --- a/var/spack/repos/builtin/packages/py-autopep8/package.py +++ b/var/spack/repos/builtin/packages/py-autopep8/package.py @@ -1,5 +1,6 @@ from spack import * + class PyAutopep8(Package): """Automatic pep8 formatter""" homepage = "https://github.com/hhatto/autopep8" @@ -13,4 +14,3 @@ class PyAutopep8(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - diff --git a/var/spack/repos/builtin/packages/py-biopython/package.py b/var/spack/repos/builtin/packages/py-biopython/package.py index bcc889756e..c3edf9735b 100644 --- a/var/spack/repos/builtin/packages/py-biopython/package.py +++ b/var/spack/repos/builtin/packages/py-biopython/package.py @@ -24,8 +24,13 @@ ############################################################################## from spack import * + class PyBiopython(Package): - """It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.""" + """A distributed collaborative effort to develop Python libraries and + applications which address the needs of current and future work in + bioinformatics. + + """ homepage = "http://biopython.org/wiki/Main_Page" url = "http://biopython.org/DIST/biopython-1.65.tar.gz" diff --git a/var/spack/repos/builtin/packages/py-blessings/package.py b/var/spack/repos/builtin/packages/py-blessings/package.py index 8d7a2343d1..e6fc6aa983 100644 --- a/var/spack/repos/builtin/packages/py-blessings/package.py +++ b/var/spack/repos/builtin/packages/py-blessings/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyBlessings(Package): """A nicer, kinder way to write to the terminal """ homepage = "https://github.com/erikrose/blessings" diff --git a/var/spack/repos/builtin/packages/py-bottleneck/package.py b/var/spack/repos/builtin/packages/py-bottleneck/package.py index 2483fab85f..ad2ee749d3 100644 --- a/var/spack/repos/builtin/packages/py-bottleneck/package.py +++ b/var/spack/repos/builtin/packages/py-bottleneck/package.py @@ -24,8 +24,9 @@ ############################################################################## from spack import * + class PyBottleneck(Package): - """Bottleneck is a collection of fast NumPy array functions written in Cython.""" + """A collection of fast NumPy array functions written in Cython.""" homepage = "https://pypi.python.org/pypi/Bottleneck/1.0.0" url = "https://pypi.python.org/packages/source/B/Bottleneck/Bottleneck-1.0.0.tar.gz" diff --git a/var/spack/repos/builtin/packages/py-cffi/package.py b/var/spack/repos/builtin/packages/py-cffi/package.py index e54d50fa50..3c1044783f 100644 --- a/var/spack/repos/builtin/packages/py-cffi/package.py +++ b/var/spack/repos/builtin/packages/py-cffi/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyCffi(Package): """Foreign Function Interface for Python calling C code""" homepage = "http://cffi.readthedocs.org/en/latest/" diff --git a/var/spack/repos/builtin/packages/py-coverage/package.py b/var/spack/repos/builtin/packages/py-coverage/package.py index b7eaf58cd6..c2a698b0bd 100644 --- a/var/spack/repos/builtin/packages/py-coverage/package.py +++ b/var/spack/repos/builtin/packages/py-coverage/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyCoverage(Package): """ Testing coverage checker for python """ # FIXME: add a proper url for your package's homepage here. diff --git a/var/spack/repos/builtin/packages/py-csvkit/package.py b/var/spack/repos/builtin/packages/py-csvkit/package.py index 2deaa2f74e..5f50e3b6c2 100644 --- a/var/spack/repos/builtin/packages/py-csvkit/package.py +++ b/var/spack/repos/builtin/packages/py-csvkit/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyCsvkit(Package): """A library of utilities for working with CSV, the king of tabular file formats""" diff --git a/var/spack/repos/builtin/packages/py-cython/package.py b/var/spack/repos/builtin/packages/py-cython/package.py index 5ccc508697..4b3e1cabe1 100644 --- a/var/spack/repos/builtin/packages/py-cython/package.py +++ b/var/spack/repos/builtin/packages/py-cython/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyCython(Package): """The Cython compiler for writing C extensions for the Python language.""" homepage = "https://pypi.python.org/pypi/cython" diff --git a/var/spack/repos/builtin/packages/py-dask/package.py b/var/spack/repos/builtin/packages/py-dask/package.py index b7dbab3d97..4bc2c6fc99 100644 --- a/var/spack/repos/builtin/packages/py-dask/package.py +++ b/var/spack/repos/builtin/packages/py-dask/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyDask(Package): """Minimal task scheduling abstraction""" homepage = "https://github.com/dask/dask/" diff --git a/var/spack/repos/builtin/packages/py-dateutil/package.py b/var/spack/repos/builtin/packages/py-dateutil/package.py index dfd1e143d9..40945232c1 100644 --- a/var/spack/repos/builtin/packages/py-dateutil/package.py +++ b/var/spack/repos/builtin/packages/py-dateutil/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyDateutil(Package): """Extensions to the standard Python datetime module.""" homepage = "https://pypi.python.org/pypi/dateutil" diff --git a/var/spack/repos/builtin/packages/py-dbf/package.py b/var/spack/repos/builtin/packages/py-dbf/package.py index 09c93de428..7f83bce75e 100644 --- a/var/spack/repos/builtin/packages/py-dbf/package.py +++ b/var/spack/repos/builtin/packages/py-dbf/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyDbf(Package): """Pure python package for reading/writing dBase, FoxPro, and Visual FoxPro .dbf files (including memos)""" diff --git a/var/spack/repos/builtin/packages/py-decorator/package.py b/var/spack/repos/builtin/packages/py-decorator/package.py index bd78f262f4..9101b07a0d 100644 --- a/var/spack/repos/builtin/packages/py-decorator/package.py +++ b/var/spack/repos/builtin/packages/py-decorator/package.py @@ -24,8 +24,11 @@ ############################################################################## from spack import * + class PyDecorator(Package): - """The aim of the decorator module it to simplify the usage of decorators for the average programmer, and to popularize decorators by showing various non-trivial examples.""" + """The aim of the decorator module it to simplify the usage of decorators + for the average programmer, and to popularize decorators by showing + various non-trivial examples.""" homepage = "https://github.com/micheles/decorator" url = "https://pypi.python.org/packages/source/d/decorator/decorator-4.0.9.tar.gz" diff --git a/var/spack/repos/builtin/packages/py-epydoc/package.py b/var/spack/repos/builtin/packages/py-epydoc/package.py index b370075e02..9d4b93dad4 100644 --- a/var/spack/repos/builtin/packages/py-epydoc/package.py +++ b/var/spack/repos/builtin/packages/py-epydoc/package.py @@ -24,8 +24,10 @@ ############################################################################## from spack import * + class PyEpydoc(Package): - """Epydoc is a tool for generating API documentation documentation for Python modules, based on their docstrings.""" + """Epydoc is a tool for generating API documentation documentation for + Python modules, based on their docstrings.""" homepage = "https://pypi.python.org/pypi/epydoc" url = "https://pypi.python.org/packages/source/e/epydoc/epydoc-3.0.1.tar.gz" diff --git a/var/spack/repos/builtin/packages/py-funcsigs/package.py b/var/spack/repos/builtin/packages/py-funcsigs/package.py index 11ba639b85..c3d37f6b98 100644 --- a/var/spack/repos/builtin/packages/py-funcsigs/package.py +++ b/var/spack/repos/builtin/packages/py-funcsigs/package.py @@ -23,7 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os + class PyFuncsigs(Package): """Python function signatures from PEP362 for Python 2.6, 2.7 and 3.2.""" @@ -38,6 +38,3 @@ class PyFuncsigs(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - - - diff --git a/var/spack/repos/builtin/packages/py-genders/package.py b/var/spack/repos/builtin/packages/py-genders/package.py index 44f6cb1ef4..f919a7e6c2 100644 --- a/var/spack/repos/builtin/packages/py-genders/package.py +++ b/var/spack/repos/builtin/packages/py-genders/package.py @@ -24,16 +24,19 @@ ############################################################################## from spack import * + class PyGenders(Package): - """Genders is a static cluster configuration database used for cluster configuration management. It is used by a variety of tools and scripts for management of large clusters.""" + """Genders is a static cluster configuration database used for cluster + configuration management. It is used by a variety of tools and scripts + for management of large clusters.""" homepage = "https://github.com/chaos/genders" url = "https://github.com/chaos/genders/releases/download/genders-1-22-1/genders-1.22.tar.gz" - version('1.22', '9ea59a024dcbddb85b0ed25ddca9bc8e', url='https://github.com/chaos/genders/releases/download/genders-1-22-1/genders-1.22.tar.gz') + version('1.22', '9ea59a024dcbddb85b0ed25ddca9bc8e', + url='https://github.com/chaos/genders/releases/download/genders-1-22-1/genders-1.22.tar.gz') extends('python') def install(self, spec, prefix): - configure("--prefix=%s" %prefix) + configure("--prefix=%s" % prefix) make(parallel=False) make("install") - diff --git a/var/spack/repos/builtin/packages/py-gnuplot/package.py b/var/spack/repos/builtin/packages/py-gnuplot/package.py index b08b03d1f1..a448a66e51 100644 --- a/var/spack/repos/builtin/packages/py-gnuplot/package.py +++ b/var/spack/repos/builtin/packages/py-gnuplot/package.py @@ -24,8 +24,10 @@ ############################################################################## from spack import * + class PyGnuplot(Package): - """Gnuplot.py is a Python package that allows you to create graphs from within Python using the gnuplot plotting program.""" + """Gnuplot.py is a Python package that allows you to create graphs from + within Python using the gnuplot plotting program.""" homepage = "http://gnuplot-py.sourceforge.net/" url = "http://downloads.sourceforge.net/project/gnuplot-py/Gnuplot-py/1.8/gnuplot-py-1.8.tar.gz" diff --git a/var/spack/repos/builtin/packages/py-ipython/package.py b/var/spack/repos/builtin/packages/py-ipython/package.py index b583609953..ac3291e21e 100644 --- a/var/spack/repos/builtin/packages/py-ipython/package.py +++ b/var/spack/repos/builtin/packages/py-ipython/package.py @@ -24,8 +24,10 @@ ############################################################################## from spack import * + class PyIpython(Package): - """IPython provides a rich toolkit to help you make the most out of using Python interactively.""" + """IPython provides a rich toolkit to help you make the most out of using + Python interactively.""" homepage = "https://pypi.python.org/pypi/ipython" url = "https://pypi.python.org/packages/source/i/ipython/ipython-2.3.1.tar.gz" diff --git a/var/spack/repos/builtin/packages/py-jdcal/package.py b/var/spack/repos/builtin/packages/py-jdcal/package.py index fd1d6b4419..32acf75131 100644 --- a/var/spack/repos/builtin/packages/py-jdcal/package.py +++ b/var/spack/repos/builtin/packages/py-jdcal/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyJdcal(Package): """Julian dates from proleptic Gregorian and Julian calendars""" diff --git a/var/spack/repos/builtin/packages/py-jinja2/package.py b/var/spack/repos/builtin/packages/py-jinja2/package.py index 57f26e3b90..943edf521a 100644 --- a/var/spack/repos/builtin/packages/py-jinja2/package.py +++ b/var/spack/repos/builtin/packages/py-jinja2/package.py @@ -48,4 +48,3 @@ class PyJinja2(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - diff --git a/var/spack/repos/builtin/packages/py-lockfile/package.py b/var/spack/repos/builtin/packages/py-lockfile/package.py index 38cc81b895..b873625bdb 100644 --- a/var/spack/repos/builtin/packages/py-lockfile/package.py +++ b/var/spack/repos/builtin/packages/py-lockfile/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyLockfile(Package): """The lockfile package exports a LockFile class which provides a simple API for locking files. Unlike the Windows msvcrt.locking diff --git a/var/spack/repos/builtin/packages/py-logilab-common/package.py b/var/spack/repos/builtin/packages/py-logilab-common/package.py index 6dab4a40e4..ac1b933e43 100644 --- a/var/spack/repos/builtin/packages/py-logilab-common/package.py +++ b/var/spack/repos/builtin/packages/py-logilab-common/package.py @@ -39,4 +39,3 @@ class PyLogilabCommon(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - diff --git a/var/spack/repos/builtin/packages/py-mako/package.py b/var/spack/repos/builtin/packages/py-mako/package.py index 56741ec11f..18a8dc0e68 100644 --- a/var/spack/repos/builtin/packages/py-mako/package.py +++ b/var/spack/repos/builtin/packages/py-mako/package.py @@ -24,12 +24,13 @@ ############################################################################## from spack import * + class PyMako(Package): - """A super-fast templating language that borrows the best - ideas from the existing templating languages.""" + """A super-fast templating language that borrows the best + ideas from the existing templating languages.""" homepage = "https://pypi.python.org/pypi/mako" - url = "https://pypi.python.org/packages/source/M/Mako/Mako-1.0.1.tar.gz" + url = "https://pypi.python.org/packages/source/M/Mako/Mako-1.0.1.tar.gz" version('1.0.1', '9f0aafd177b039ef67b90ea350497a54') diff --git a/var/spack/repos/builtin/packages/py-markupsafe/package.py b/var/spack/repos/builtin/packages/py-markupsafe/package.py index ee396de7be..0a039d1d47 100644 --- a/var/spack/repos/builtin/packages/py-markupsafe/package.py +++ b/var/spack/repos/builtin/packages/py-markupsafe/package.py @@ -48,4 +48,3 @@ class PyMarkupsafe(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - diff --git a/var/spack/repos/builtin/packages/py-matplotlib/package.py b/var/spack/repos/builtin/packages/py-matplotlib/package.py index b5eb8a53c4..c454a47ec3 100644 --- a/var/spack/repos/builtin/packages/py-matplotlib/package.py +++ b/var/spack/repos/builtin/packages/py-matplotlib/package.py @@ -25,6 +25,7 @@ from spack import * import os + class PyMatplotlib(Package): """Python plotting package.""" homepage = "https://pypi.python.org/pypi/matplotlib" @@ -65,12 +66,12 @@ class PyMatplotlib(Package): if str(self.version) in ['1.4.2', '1.4.3']: # hack to fix configuration file config_file = None - for p,d,f in os.walk(prefix.lib): + for p, d, f in os.walk(prefix.lib): for file in f: if file.find('matplotlibrc') != -1: config_file = join_path(p, 'matplotlibrc') print config_file - if config_file == None: + if config_file is None: raise InstallError('could not find config file') filter_file(r'backend : pyside', 'backend : Qt4Agg', diff --git a/var/spack/repos/builtin/packages/py-mock/package.py b/var/spack/repos/builtin/packages/py-mock/package.py index f4c178de67..2c70535f19 100644 --- a/var/spack/repos/builtin/packages/py-mock/package.py +++ b/var/spack/repos/builtin/packages/py-mock/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyMock(Package): """mock is a library for testing in Python. It allows you to replace parts of your system under test with mock objects and make assertions about how diff --git a/var/spack/repos/builtin/packages/py-mpi4py/package.py b/var/spack/repos/builtin/packages/py-mpi4py/package.py index a749e16779..1f0e52804e 100644 --- a/var/spack/repos/builtin/packages/py-mpi4py/package.py +++ b/var/spack/repos/builtin/packages/py-mpi4py/package.py @@ -24,8 +24,14 @@ ############################################################################## from spack import * + class PyMpi4py(Package): - """This package provides Python bindings for the Message Passing Interface (MPI) standard. It is implemented on top of the MPI-1/MPI-2 specification and exposes an API which grounds on the standard MPI-2 C++ bindings.""" + """This package provides Python bindings for the Message Passing + Interface (MPI) standard. It is implemented on top of the + MPI-1/MPI-2 specification and exposes an API which grounds on the + standard MPI-2 C++ bindings. + + """ homepage = "https://pypi.python.org/pypi/mpi4py" url = "https://pypi.python.org/packages/source/m/mpi4py/mpi4py-1.3.1.tar.gz" diff --git a/var/spack/repos/builtin/packages/py-mpmath/package.py b/var/spack/repos/builtin/packages/py-mpmath/package.py index 899ff053a9..e5bae34694 100644 --- a/var/spack/repos/builtin/packages/py-mpmath/package.py +++ b/var/spack/repos/builtin/packages/py-mpmath/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyMpmath(Package): """A Python library for arbitrary-precision floating-point arithmetic.""" homepage = "http://mpmath.org" diff --git a/var/spack/repos/builtin/packages/py-mx/package.py b/var/spack/repos/builtin/packages/py-mx/package.py index d0f9f7cadf..f5631916f6 100644 --- a/var/spack/repos/builtin/packages/py-mx/package.py +++ b/var/spack/repos/builtin/packages/py-mx/package.py @@ -24,8 +24,14 @@ ############################################################################## from spack import * + class PyMx(Package): - """The eGenix.com mx Base Distribution for Python is a collection of professional quality software tools which enhance Python's usability in many important areas such as fast text searching, date/time processing and high speed data types.""" + """The eGenix.com mx Base Distribution for Python is a collection of + professional quality software tools which enhance Python's + usability in many important areas such as fast text searching, + date/time processing and high speed data types. + + """ homepage = "http://www.egenix.com/products/python/mxBase/" url = "https://downloads.egenix.com/python/egenix-mx-base-3.2.8.tar.gz" diff --git a/var/spack/repos/builtin/packages/py-mysqldb1/package.py b/var/spack/repos/builtin/packages/py-mysqldb1/package.py index 46b44f34dd..693fda6dbb 100644 --- a/var/spack/repos/builtin/packages/py-mysqldb1/package.py +++ b/var/spack/repos/builtin/packages/py-mysqldb1/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyMysqldb1(Package): """Legacy mysql bindings for python""" homepage = "https://github.com/farcepest/MySQLdb1" @@ -36,4 +37,3 @@ class PyMysqldb1(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - diff --git a/var/spack/repos/builtin/packages/py-netcdf/package.py b/var/spack/repos/builtin/packages/py-netcdf/package.py index 9a354cb1c1..e4f67d75a6 100644 --- a/var/spack/repos/builtin/packages/py-netcdf/package.py +++ b/var/spack/repos/builtin/packages/py-netcdf/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyNetcdf(Package): """Python interface to the netCDF Library.""" homepage = "http://unidata.github.io/netcdf4-python" diff --git a/var/spack/repos/builtin/packages/py-numexpr/package.py b/var/spack/repos/builtin/packages/py-numexpr/package.py index fd8d7dc0c6..b3b2e1d47d 100644 --- a/var/spack/repos/builtin/packages/py-numexpr/package.py +++ b/var/spack/repos/builtin/packages/py-numexpr/package.py @@ -23,7 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import re + class PyNumexpr(Package): """Fast numerical expression evaluator for NumPy""" diff --git a/var/spack/repos/builtin/packages/py-openpyxl/package.py b/var/spack/repos/builtin/packages/py-openpyxl/package.py index 624da58ff3..fa32cb879f 100644 --- a/var/spack/repos/builtin/packages/py-openpyxl/package.py +++ b/var/spack/repos/builtin/packages/py-openpyxl/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyOpenpyxl(Package): """A Python library to read/write Excel 2007 xlsx/xlsm files""" diff --git a/var/spack/repos/builtin/packages/py-pandas/package.py b/var/spack/repos/builtin/packages/py-pandas/package.py index 8bd4227faf..37234ae652 100644 --- a/var/spack/repos/builtin/packages/py-pandas/package.py +++ b/var/spack/repos/builtin/packages/py-pandas/package.py @@ -23,10 +23,18 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os + class PyPandas(Package): - """pandas is a Python package providing fast, flexible, and expressive data structures designed to make working with relational or labeled data both easy and intuitive. It aims to be the fundamental high-level building block for doing practical, real world data analysis in Python. Additionally, it has the broader goal of becoming the most powerful and flexible open source data analysis / manipulation tool available in any language.""" + """pandas is a Python package providing fast, flexible, and expressive + data structures designed to make working with relational or + labeled data both easy and intuitive. It aims to be the + fundamental high-level building block for doing practical, real + world data analysis in Python. Additionally, it has the broader + goal of becoming the most powerful and flexible open source data + analysis / manipulation tool available in any language. + + """ homepage = "http://pandas.pydata.org/" url = "https://pypi.python.org/packages/source/p/pandas/pandas-0.16.0.tar.gz#md5=bfe311f05dc0c351f8955fbd1e296e73" diff --git a/var/spack/repos/builtin/packages/py-pbr/package.py b/var/spack/repos/builtin/packages/py-pbr/package.py index 8502b0b364..a0cfe0e5a5 100644 --- a/var/spack/repos/builtin/packages/py-pbr/package.py +++ b/var/spack/repos/builtin/packages/py-pbr/package.py @@ -23,10 +23,11 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os + class PyPbr(Package): - """PBR is a library that injects some useful and sensible default behaviors into your setuptools run.""" + """PBR is a library that injects some useful and sensible default + behaviors into your setuptools run.""" homepage = "https://pypi.python.org/pypi/pbr" url = "https://pypi.python.org/packages/source/p/pbr/pbr-1.8.1.tar.gz" @@ -38,5 +39,3 @@ class PyPbr(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - - diff --git a/var/spack/repos/builtin/packages/py-pep8/package.py b/var/spack/repos/builtin/packages/py-pep8/package.py index ffcc2b318c..87d1da9ab0 100644 --- a/var/spack/repos/builtin/packages/py-pep8/package.py +++ b/var/spack/repos/builtin/packages/py-pep8/package.py @@ -1,5 +1,6 @@ from spack import * + class PyPep8(Package): """python pep8 format checker""" homepage = "https://github.com/PyCQA/pycodestyle" @@ -12,4 +13,3 @@ class PyPep8(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - diff --git a/var/spack/repos/builtin/packages/py-periodictable/package.py b/var/spack/repos/builtin/packages/py-periodictable/package.py index 608f4e16c1..51d9cc2046 100644 --- a/var/spack/repos/builtin/packages/py-periodictable/package.py +++ b/var/spack/repos/builtin/packages/py-periodictable/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyPeriodictable(Package): """nose extends the test loading and running features of unittest, making it easier to write, find and run tests.""" diff --git a/var/spack/repos/builtin/packages/py-pexpect/package.py b/var/spack/repos/builtin/packages/py-pexpect/package.py index dd95af9643..8a99c0473b 100644 --- a/var/spack/repos/builtin/packages/py-pexpect/package.py +++ b/var/spack/repos/builtin/packages/py-pexpect/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyPexpect(Package): """Pexpect allows easy control of interactive console applications.""" homepage = "https://pypi.python.org/pypi/pexpect" diff --git a/var/spack/repos/builtin/packages/py-phonopy/package.py b/var/spack/repos/builtin/packages/py-phonopy/package.py index a3a4b7a9f7..d5b3313a98 100644 --- a/var/spack/repos/builtin/packages/py-phonopy/package.py +++ b/var/spack/repos/builtin/packages/py-phonopy/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyPhonopy(Package): """Phonopy is an open source package for phonon calculations at harmonic and quasi-harmonic levels.""" diff --git a/var/spack/repos/builtin/packages/py-pillow/package.py b/var/spack/repos/builtin/packages/py-pillow/package.py index 13a09f63cf..aae5727d4e 100644 --- a/var/spack/repos/builtin/packages/py-pillow/package.py +++ b/var/spack/repos/builtin/packages/py-pillow/package.py @@ -53,7 +53,8 @@ class PyPillow(Package): variant('tiff', default=False, description='Access to TIFF files') variant('freetype', default=False, description='Font related services') variant('lcms', default=False, description='Color management') - variant('jpeg2000', default=False, description='Provide JPEG 2000 functionality') + variant('jpeg2000', default=False, + description='Provide JPEG 2000 functionality') # Spack does not (yet) support these modes of building # variant('webp', default=False, description='Provide the WebP format') diff --git a/var/spack/repos/builtin/packages/py-pmw/package.py b/var/spack/repos/builtin/packages/py-pmw/package.py index 062bfe9c03..e0a332a6bf 100644 --- a/var/spack/repos/builtin/packages/py-pmw/package.py +++ b/var/spack/repos/builtin/packages/py-pmw/package.py @@ -24,8 +24,10 @@ ############################################################################## from spack import * + class PyPmw(Package): - """Pmw is a toolkit for building high-level compound widgets, or megawidgets, constructed using other widgets as component parts.""" + """Pmw is a toolkit for building high-level compound widgets, or + megawidgets, constructed using other widgets as component parts.""" homepage = "https://pypi.python.org/pypi/Pmw" url = "https://pypi.python.org/packages/source/P/Pmw/Pmw-2.0.0.tar.gz" diff --git a/var/spack/repos/builtin/packages/py-py2neo/package.py b/var/spack/repos/builtin/packages/py-py2neo/package.py index 02f37d8b78..a79c2e477b 100644 --- a/var/spack/repos/builtin/packages/py-py2neo/package.py +++ b/var/spack/repos/builtin/packages/py-py2neo/package.py @@ -43,4 +43,3 @@ class PyPy2neo(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - diff --git a/var/spack/repos/builtin/packages/py-pychecker/package.py b/var/spack/repos/builtin/packages/py-pychecker/package.py index 137c5f491c..e81c3dbc9b 100644 --- a/var/spack/repos/builtin/packages/py-pychecker/package.py +++ b/var/spack/repos/builtin/packages/py-pychecker/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyPychecker(Package): """""" homepage = "http://pychecker.sourceforge.net/" diff --git a/var/spack/repos/builtin/packages/py-pycparser/package.py b/var/spack/repos/builtin/packages/py-pycparser/package.py index 9afba50077..ef1b772ffc 100644 --- a/var/spack/repos/builtin/packages/py-pycparser/package.py +++ b/var/spack/repos/builtin/packages/py-pycparser/package.py @@ -24,14 +24,14 @@ ############################################################################## from spack import * + class PyPycparser(Package): - """pycparser is a complete parser of the C language, written in pure python""" + """A complete parser of the C language, written in pure python.""" homepage = "https://github.com/eliben/pycparser" url = "https://pypi.python.org/packages/source/p/pycparser/pycparser-2.13.tar.gz" version('2.13', 'e4fe1a2d341b22e25da0d22f034ef32f') - extends('python') depends_on('py-setuptools', type='build') diff --git a/var/spack/repos/builtin/packages/py-pyelftools/package.py b/var/spack/repos/builtin/packages/py-pyelftools/package.py index 0c4a7a36cc..bf781daf83 100644 --- a/var/spack/repos/builtin/packages/py-pyelftools/package.py +++ b/var/spack/repos/builtin/packages/py-pyelftools/package.py @@ -24,8 +24,10 @@ ############################################################################## from spack import * + class PyPyelftools(Package): - """A pure-Python library for parsing and analyzing ELF files and DWARF debugging information""" + """A pure-Python library for parsing and analyzing ELF files and DWARF + debugging information""" homepage = "https://pypi.python.org/pypi/pyelftools" url = "https://pypi.python.org/packages/source/p/pyelftools/pyelftools-0.23.tar.gz" diff --git a/var/spack/repos/builtin/packages/py-pygments/package.py b/var/spack/repos/builtin/packages/py-pygments/package.py index 0ca15dd10d..2d22bd9f03 100644 --- a/var/spack/repos/builtin/packages/py-pygments/package.py +++ b/var/spack/repos/builtin/packages/py-pygments/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyPygments(Package): """Pygments is a syntax highlighting package written in Python.""" homepage = "https://pypi.python.org/pypi/pygments" diff --git a/var/spack/repos/builtin/packages/py-pylint/package.py b/var/spack/repos/builtin/packages/py-pylint/package.py index 7107b2987f..c505d44530 100644 --- a/var/spack/repos/builtin/packages/py-pylint/package.py +++ b/var/spack/repos/builtin/packages/py-pylint/package.py @@ -23,7 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import re + class PyPylint(Package): """array processing for numbers, strings, records, and objects.""" diff --git a/var/spack/repos/builtin/packages/py-pypar/package.py b/var/spack/repos/builtin/packages/py-pypar/package.py index f762789dea..6fef71304c 100644 --- a/var/spack/repos/builtin/packages/py-pypar/package.py +++ b/var/spack/repos/builtin/packages/py-pypar/package.py @@ -24,12 +24,16 @@ ############################################################################## from spack import * + class PyPypar(Package): - """Pypar is an efficient but easy-to-use module that allows programs written in Python to run in parallel on multiple processors and communicate using MPI.""" + """Pypar is an efficient but easy-to-use module that allows programs + written in Python to run in parallel on multiple processors and + communicate using MPI.""" homepage = "http://code.google.com/p/pypar/" url = "https://pypar.googlecode.com/files/pypar-2.1.5_108.tgz" - version('2.1.5_108', '7a1f28327d2a3b679f9455c843d850b8', url='https://pypar.googlecode.com/files/pypar-2.1.5_108.tgz') + version('2.1.5_108', '7a1f28327d2a3b679f9455c843d850b8', + url='https://pypar.googlecode.com/files/pypar-2.1.5_108.tgz') extends('python') depends_on('mpi') diff --git a/var/spack/repos/builtin/packages/py-pyparsing/package.py b/var/spack/repos/builtin/packages/py-pyparsing/package.py index 0423aa3bdb..67d255b02d 100644 --- a/var/spack/repos/builtin/packages/py-pyparsing/package.py +++ b/var/spack/repos/builtin/packages/py-pyparsing/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyPyparsing(Package): """A Python Parsing Module.""" homepage = "https://pypi.python.org/pypi/pyparsing" diff --git a/var/spack/repos/builtin/packages/py-pyqt/package.py b/var/spack/repos/builtin/packages/py-pyqt/package.py index 05fb7aa22c..de68bfaa90 100644 --- a/var/spack/repos/builtin/packages/py-pyqt/package.py +++ b/var/spack/repos/builtin/packages/py-pyqt/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyPyqt(Package): """PyQt is a set of Python v2 and v3 bindings for Digia's Qt application framework and runs on all platforms supported by Qt diff --git a/var/spack/repos/builtin/packages/py-pyside/package.py b/var/spack/repos/builtin/packages/py-pyside/package.py index cd174ce658..1cb3e4745f 100644 --- a/var/spack/repos/builtin/packages/py-pyside/package.py +++ b/var/spack/repos/builtin/packages/py-pyside/package.py @@ -25,6 +25,7 @@ from spack import * import os + class PyPyside(Package): """Python bindings for Qt.""" homepage = "https://pypi.python.org/pypi/pyside" @@ -43,7 +44,8 @@ class PyPyside(Package): # Figure out the special RPATH pypkg = self.spec['python'].package rpath = self.rpath - rpath.append(os.path.join(self.prefix, pypkg.site_packages_dir, 'PySide')) + rpath.append(os.path.join( + self.prefix, pypkg.site_packages_dir, 'PySide')) # Add Spack's standard CMake args to the sub-builds. # They're called BY setup.py so we have to patch it. @@ -61,7 +63,6 @@ class PyPyside(Package): r'#rpath_cmd(pyside_path, srcpath)', 'pyside_postinstall.py') - def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix, diff --git a/var/spack/repos/builtin/packages/py-python-daemon/package.py b/var/spack/repos/builtin/packages/py-python-daemon/package.py index c2c7c4de4f..a30dc00ba4 100644 --- a/var/spack/repos/builtin/packages/py-python-daemon/package.py +++ b/var/spack/repos/builtin/packages/py-python-daemon/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyPythonDaemon(Package): """Library to implement a well-behaved Unix daemon process. @@ -47,4 +48,3 @@ class PyPythonDaemon(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - diff --git a/var/spack/repos/builtin/packages/py-pytz/package.py b/var/spack/repos/builtin/packages/py-pytz/package.py index caf2c90e73..96f686d591 100644 --- a/var/spack/repos/builtin/packages/py-pytz/package.py +++ b/var/spack/repos/builtin/packages/py-pytz/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyPytz(Package): """World timezone definitions, modern and historical.""" homepage = "https://pypi.python.org/pypi/pytz" diff --git a/var/spack/repos/builtin/packages/py-pyyaml/package.py b/var/spack/repos/builtin/packages/py-pyyaml/package.py index c0e22ba681..8da391fac1 100644 --- a/var/spack/repos/builtin/packages/py-pyyaml/package.py +++ b/var/spack/repos/builtin/packages/py-pyyaml/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyPyyaml(Package): """PyYAML is a YAML parser and emitter for Python.""" homepage = "http://pyyaml.org/wiki/PyYAML" diff --git a/var/spack/repos/builtin/packages/py-rpy2/package.py b/var/spack/repos/builtin/packages/py-rpy2/package.py index 8f4771f0eb..f86d813766 100644 --- a/var/spack/repos/builtin/packages/py-rpy2/package.py +++ b/var/spack/repos/builtin/packages/py-rpy2/package.py @@ -24,10 +24,16 @@ ############################################################################## from spack import * + class PyRpy2(Package): - """rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R from Python, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions.""" + """rpy2 is a redesign and rewrite of rpy. It is providing a low-level + interface to R from Python, a proposed high-level interface, + including wrappers to graphical libraries, as well as R-like + structures and functions. + + """ homepage = "https://pypi.python.org/pypi/rpy2" - url = "https://pypi.python.org/packages/source/r/rpy2/rpy2-2.5.4.tar.gz" + url = "https://pypi.python.org/packages/source/r/rpy2/rpy2-2.5.4.tar.gz" version('2.5.4', '115a20ac30883f096da2bdfcab55196d') version('2.5.6', 'a36e758b633ce6aec6a5f450bfee980f') diff --git a/var/spack/repos/builtin/packages/py-scientificpython/package.py b/var/spack/repos/builtin/packages/py-scientificpython/package.py index 7f7eb76b73..e2273dc164 100644 --- a/var/spack/repos/builtin/packages/py-scientificpython/package.py +++ b/var/spack/repos/builtin/packages/py-scientificpython/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyScientificpython(Package): """ScientificPython is a collection of Python modules for scientific computing. It contains support for geometry, diff --git a/var/spack/repos/builtin/packages/py-scikit-learn/package.py b/var/spack/repos/builtin/packages/py-scikit-learn/package.py index 1a6112bcf3..3cd7ea74f3 100644 --- a/var/spack/repos/builtin/packages/py-scikit-learn/package.py +++ b/var/spack/repos/builtin/packages/py-scikit-learn/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyScikitLearn(Package): """""" homepage = "https://pypi.python.org/pypi/scikit-learn" diff --git a/var/spack/repos/builtin/packages/py-scipy/package.py b/var/spack/repos/builtin/packages/py-scipy/package.py index ea3731cf1b..cab516e1df 100644 --- a/var/spack/repos/builtin/packages/py-scipy/package.py +++ b/var/spack/repos/builtin/packages/py-scipy/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyScipy(Package): """Scientific Library for Python.""" homepage = "http://www.scipy.org/" @@ -41,7 +42,8 @@ class PyScipy(Package): if 'atlas' in spec: # libatlas.so actually isn't always installed, but this # seems to make the build autodetect things correctly. - env['ATLAS'] = join_path(spec['atlas'].prefix.lib, 'libatlas.' + dso_suffix) + env['ATLAS'] = join_path( + spec['atlas'].prefix.lib, 'libatlas.' + dso_suffix) else: env['BLAS'] = spec['blas'].blas_shared_lib env['LAPACK'] = spec['lapack'].lapack_shared_lib diff --git a/var/spack/repos/builtin/packages/py-shiboken/package.py b/var/spack/repos/builtin/packages/py-shiboken/package.py index 27188e1417..0713f26ebc 100644 --- a/var/spack/repos/builtin/packages/py-shiboken/package.py +++ b/var/spack/repos/builtin/packages/py-shiboken/package.py @@ -25,8 +25,9 @@ from spack import * import os + class PyShiboken(Package): - """Shiboken generates bindings for C++ libraries using CPython source code.""" + """Shiboken generates bindings for C++ libraries using CPython.""" homepage = "https://shiboken.readthedocs.org/" url = "https://pypi.python.org/packages/source/S/Shiboken/Shiboken-1.2.2.tar.gz" @@ -45,7 +46,8 @@ class PyShiboken(Package): # They're called BY setup.py so we have to patch it. pypkg = self.spec['python'].package rpath = self.rpath - rpath.append(os.path.join(self.prefix, pypkg.site_packages_dir, 'Shiboken')) + rpath.append(os.path.join( + self.prefix, pypkg.site_packages_dir, 'Shiboken')) filter_file( r'OPTION_CMAKE,', @@ -61,7 +63,6 @@ class PyShiboken(Package): r'#rpath_cmd(shiboken_path, srcpath)', 'shiboken_postinstall.py') - def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix, diff --git a/var/spack/repos/builtin/packages/py-sip/package.py b/var/spack/repos/builtin/packages/py-sip/package.py index fc8e7f5296..9d97f08433 100644 --- a/var/spack/repos/builtin/packages/py-sip/package.py +++ b/var/spack/repos/builtin/packages/py-sip/package.py @@ -25,8 +25,10 @@ from spack import * import os + class PySip(Package): - """SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.""" + """SIP is a tool that makes it very easy to create Python bindings for C + and C++ libraries.""" homepage = "http://www.riverbankcomputing.com/software/sip/intro" url = "http://sourceforge.net/projects/pyqt/files/sip/sip-4.16.5/sip-4.16.5.tar.gz" diff --git a/var/spack/repos/builtin/packages/py-six/package.py b/var/spack/repos/builtin/packages/py-six/package.py index eb4846d5af..da0c7aa003 100644 --- a/var/spack/repos/builtin/packages/py-six/package.py +++ b/var/spack/repos/builtin/packages/py-six/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PySix(Package): """Python 2 and 3 compatibility utilities.""" homepage = "https://pypi.python.org/pypi/six" diff --git a/var/spack/repos/builtin/packages/py-sphinx/package.py b/var/spack/repos/builtin/packages/py-sphinx/package.py index d00f1d128b..2295a6a0c3 100644 --- a/var/spack/repos/builtin/packages/py-sphinx/package.py +++ b/var/spack/repos/builtin/packages/py-sphinx/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PySphinx(Package): """Sphinx Documentation Generator.""" homepage = "http://sphinx-doc.org" diff --git a/var/spack/repos/builtin/packages/py-sympy/package.py b/var/spack/repos/builtin/packages/py-sympy/package.py index 5e38fc5be1..3d8b86ac4d 100644 --- a/var/spack/repos/builtin/packages/py-sympy/package.py +++ b/var/spack/repos/builtin/packages/py-sympy/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PySympy(Package): """SymPy is a Python library for symbolic mathematics.""" homepage = "https://pypi.python.org/pypi/sympy" diff --git a/var/spack/repos/builtin/packages/py-tappy/package.py b/var/spack/repos/builtin/packages/py-tappy/package.py index b10244acdd..03e9528ad7 100644 --- a/var/spack/repos/builtin/packages/py-tappy/package.py +++ b/var/spack/repos/builtin/packages/py-tappy/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyTappy(Package): """Python TAP interface module for unit tests""" homepage = "https://github.com/mblayman/tappy" diff --git a/var/spack/repos/builtin/packages/py-tuiview/package.py b/var/spack/repos/builtin/packages/py-tuiview/package.py index 56056ebad1..672a3ee587 100644 --- a/var/spack/repos/builtin/packages/py-tuiview/package.py +++ b/var/spack/repos/builtin/packages/py-tuiview/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyTuiview(Package): """ TuiView is a lightweight raster GIS with powerful raster attribute diff --git a/var/spack/repos/builtin/packages/py-twisted/package.py b/var/spack/repos/builtin/packages/py-twisted/package.py index 2ce83cd24c..edf1e7b0d7 100644 --- a/var/spack/repos/builtin/packages/py-twisted/package.py +++ b/var/spack/repos/builtin/packages/py-twisted/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyTwisted(Package): """An asynchronous networking framework written in Python""" homepage = "https://twistedmatrix.com/" diff --git a/var/spack/repos/builtin/packages/py-urwid/package.py b/var/spack/repos/builtin/packages/py-urwid/package.py index 48ba84e7bc..943fb250f6 100644 --- a/var/spack/repos/builtin/packages/py-urwid/package.py +++ b/var/spack/repos/builtin/packages/py-urwid/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyUrwid(Package): """A full-featured console UI library""" homepage = "http://urwid.org/" @@ -37,4 +38,3 @@ class PyUrwid(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - diff --git a/var/spack/repos/builtin/packages/py-virtualenv/package.py b/var/spack/repos/builtin/packages/py-virtualenv/package.py index d6b33ae175..0ed567df95 100644 --- a/var/spack/repos/builtin/packages/py-virtualenv/package.py +++ b/var/spack/repos/builtin/packages/py-virtualenv/package.py @@ -23,7 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import shutil + class PyVirtualenv(Package): """virtualenv is a tool to create isolated Python environments.""" diff --git a/var/spack/repos/builtin/packages/py-wheel/package.py b/var/spack/repos/builtin/packages/py-wheel/package.py index 9e383a9a19..f0ad340835 100644 --- a/var/spack/repos/builtin/packages/py-wheel/package.py +++ b/var/spack/repos/builtin/packages/py-wheel/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyWheel(Package): """A built-package format for Python.""" diff --git a/var/spack/repos/builtin/packages/py-xlrd/package.py b/var/spack/repos/builtin/packages/py-xlrd/package.py index 9220f90340..81c3c928c0 100644 --- a/var/spack/repos/builtin/packages/py-xlrd/package.py +++ b/var/spack/repos/builtin/packages/py-xlrd/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyXlrd(Package): """Library for developers to extract data from Microsoft Excel (tm) spreadsheet files""" diff --git a/var/spack/repos/builtin/packages/py-yapf/package.py b/var/spack/repos/builtin/packages/py-yapf/package.py index f7fe4037a1..bc26b82b07 100644 --- a/var/spack/repos/builtin/packages/py-yapf/package.py +++ b/var/spack/repos/builtin/packages/py-yapf/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class PyYapf(Package): """ Yet Another Python Formatter """ homepage = "https://github.com/google/yapf" diff --git a/var/spack/repos/builtin/packages/python/package.py b/var/spack/repos/builtin/packages/python/package.py index f755527607..43f600e2f6 100644 --- a/var/spack/repos/builtin/packages/python/package.py +++ b/var/spack/repos/builtin/packages/python/package.py @@ -55,7 +55,8 @@ class Python(Package): extendable = True variant('tk', default=False, description='Provide support for Tkinter') - variant('ucs4', default=False, description='Enable UCS4 (wide) unicode strings') + variant('ucs4', default=False, + description='Enable UCS4 (wide) unicode strings') # From https://docs.python.org/2/c-api/unicode.html: Python's default # builds use a 16-bit type for Py_UNICODE and store Unicode values # internally as UCS2. It is also possible to build a UCS4 version of Python diff --git a/var/spack/repos/builtin/packages/qhull/package.py b/var/spack/repos/builtin/packages/qhull/package.py index f7cbcc2736..2733d8b652 100644 --- a/var/spack/repos/builtin/packages/qhull/package.py +++ b/var/spack/repos/builtin/packages/qhull/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Qhull(Package): """Qhull computes the convex hull, Delaunay triangulation, Voronoi diagram, halfspace intersection about a point, furt hest-site @@ -44,7 +45,7 @@ class Qhull(Package): # https://github.com/qhull/qhull/pull/5 patch('qhull-iterator.patch', when='@1.0') - + depends_on('cmake', type='build') def install(self, spec, prefix): diff --git a/var/spack/repos/builtin/packages/qrupdate/package.py b/var/spack/repos/builtin/packages/qrupdate/package.py index 314950dc36..f6b4c80cf4 100644 --- a/var/spack/repos/builtin/packages/qrupdate/package.py +++ b/var/spack/repos/builtin/packages/qrupdate/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Qrupdate(Package): """qrupdate is a Fortran library for fast updates of QR and Cholesky decompositions.""" diff --git a/var/spack/repos/builtin/packages/qt/package.py b/var/spack/repos/builtin/packages/qt/package.py index f33e5c2d0e..e496a3e4d5 100644 --- a/var/spack/repos/builtin/packages/qt/package.py +++ b/var/spack/repos/builtin/packages/qt/package.py @@ -25,6 +25,7 @@ from spack import * import os + class Qt(Package): """Qt is a comprehensive cross-platform C++ application framework.""" homepage = 'http://qt.io' @@ -37,15 +38,17 @@ class Qt(Package): version('4.8.6', '2edbe4d6c2eff33ef91732602f3518eb') version('3.3.8b', '9f05b4125cfe477cc52c9742c3c09009') - # Add patch for compile issues with qt3 found with use in the OpenSpeedShop project - variant('krellpatch', default=False, description="Build with openspeedshop based patch.") + # Add patch for compile issues with qt3 found with use in the + # OpenSpeedShop project + variant('krellpatch', default=False, + description="Build with openspeedshop based patch.") variant('mesa', default=False, description="Depend on mesa.") variant('gtk', default=False, description="Build with gtkplus.") patch('qt3krell.patch', when='@3.3.8b+krellpatch') # Use system openssl for security. - #depends_on("openssl") + # depends_on("openssl") depends_on("glib") depends_on("gtkplus", when='+gtk') @@ -69,43 +72,39 @@ class Qt(Package): depends_on("mesa", when='@4:+mesa') depends_on("libxcb") - def url_for_version(self, version): url = "http://download.qt.io/archive/qt/" if version >= Version('5'): url += "%s/%s/single/qt-everywhere-opensource-src-%s.tar.gz" % \ - (version.up_to(2), version, version) + (version.up_to(2), version, version) elif version >= Version('4.8'): url += "%s/%s/qt-everywhere-opensource-src-%s.tar.gz" % \ - (version.up_to(2), version, version) + (version.up_to(2), version, version) elif version >= Version('4.6'): url += "%s/qt-everywhere-opensource-src-%s.tar.gz" % \ - (version.up_to(2), version) + (version.up_to(2), version) elif version >= Version('4.0'): url += "%s/qt-x11-opensource-src-%s.tar.gz" % \ - (version.up_to(2), version) + (version.up_to(2), version) elif version >= Version('3'): url += "%s/qt-x11-free-%s.tar.gz" % \ - (version.up_to(1), version) + (version.up_to(1), version) elif version >= Version('2.1'): url += "%s/qt-x11-%s.tar.gz" % \ - (version.up_to(1), version) + (version.up_to(1), version) else: url += "%s/qt-%s.tar.gz" % \ - (version.up_to(1), version) + (version.up_to(1), version) return url - def setup_environment(self, spack_env, env): env.set('QTDIR', self.prefix) - def setup_dependent_environment(self, spack_env, run_env, dspec): spack_env.set('QTDIR', self.prefix) - def patch(self): if self.spec.satisfies('@4'): qmake_conf = 'mkspecs/common/g++-base.conf' @@ -117,11 +116,14 @@ class Qt(Package): return # Fix qmake compilers in the default mkspec - filter_file(r'^QMAKE_COMPILER *=.*$', 'QMAKE_COMPILER = cc', qmake_conf) - filter_file(r'^QMAKE_CC *=.*$', 'QMAKE_CC = cc', qmake_conf) - filter_file(r'^QMAKE_CXX *=.*$', 'QMAKE_CXX = c++', qmake_conf) - filter_file(r'^QMAKE_LFLAGS_NOUNDEF *\+?=.*$', 'QMAKE_LFLAGS_NOUNDEF =', qmake_unix_conf) - + filter_file(r'^QMAKE_COMPILER *=.*$', + 'QMAKE_COMPILER = cc', qmake_conf) + filter_file(r'^QMAKE_CC *=.*$', + 'QMAKE_CC = cc', qmake_conf) + filter_file(r'^QMAKE_CXX *=.*$', + 'QMAKE_CXX = c++', qmake_conf) + filter_file(r'^QMAKE_LFLAGS_NOUNDEF *\+?=.*$', + 'QMAKE_LFLAGS_NOUNDEF =', qmake_unix_conf) @property def common_config_args(self): @@ -155,7 +157,7 @@ class Qt(Package): @when('@3') def configure(self): # An user report that this was necessary to link Qt3 on ubuntu - os.environ['LD_LIBRARY_PATH'] = os.getcwd()+'/lib' + os.environ['LD_LIBRARY_PATH'] = os.getcwd() + '/lib' configure('-prefix', self.prefix, '-v', '-thread', @@ -169,17 +171,16 @@ class Qt(Package): '-no-webkit', *self.common_config_args) - @when('@5') def configure(self): configure('-no-eglfs', '-no-directfb', '-qt-xcb', - # If someone wants to get a webkit build working, be my guest! + # If someone wants to get a webkit build working, be my + # guest! '-skip', 'qtwebkit', *self.common_config_args) - def install(self, spec, prefix): self.configure() make() diff --git a/var/spack/repos/builtin/packages/qthreads/package.py b/var/spack/repos/builtin/packages/qthreads/package.py index 47b5706063..2eaff0a240 100644 --- a/var/spack/repos/builtin/packages/qthreads/package.py +++ b/var/spack/repos/builtin/packages/qthreads/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Qthreads(Package): """The qthreads API is designed to make using large numbers of threads convenient and easy, and to allow portable access to diff --git a/var/spack/repos/builtin/packages/raja/package.py b/var/spack/repos/builtin/packages/raja/package.py index b6300a1dfa..e9db4b4fc8 100644 --- a/var/spack/repos/builtin/packages/raja/package.py +++ b/var/spack/repos/builtin/packages/raja/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Raja(Package): """RAJA Parallel Framework.""" homepage = "http://software.llnl.gov/RAJA/" @@ -31,6 +32,6 @@ class Raja(Package): version('git', git='https://github.com/LLNL/RAJA.git', branch="master") def install(self, spec, prefix): - cmake('.',*std_cmake_args) - make() - make('install') + cmake('.', *std_cmake_args) + make() + make('install') diff --git a/var/spack/repos/builtin/packages/ravel/package.py b/var/spack/repos/builtin/packages/ravel/package.py index 96692ac7c1..4f4f2b2e10 100644 --- a/var/spack/repos/builtin/packages/ravel/package.py +++ b/var/spack/repos/builtin/packages/ravel/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Ravel(Package): """Ravel is a parallel communication trace visualization tool that orders events according to logical time.""" diff --git a/var/spack/repos/builtin/packages/readline/package.py b/var/spack/repos/builtin/packages/readline/package.py index 039bf725eb..abb6ba04ce 100644 --- a/var/spack/repos/builtin/packages/readline/package.py +++ b/var/spack/repos/builtin/packages/readline/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Readline(Package): """The GNU Readline library provides a set of functions for use by applications that allow users to edit command lines as they diff --git a/var/spack/repos/builtin/packages/rose/package.py b/var/spack/repos/builtin/packages/rose/package.py index bcd317eb8f..02b09f0126 100644 --- a/var/spack/repos/builtin/packages/rose/package.py +++ b/var/spack/repos/builtin/packages/rose/package.py @@ -22,12 +22,13 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -#------------------------------------------------------------------------------ +# ----------------------------------------------------------------------------- # Author: Justin Too <too1@llnl.gov> -#------------------------------------------------------------------------------ +# ----------------------------------------------------------------------------- from spack import * + class Rose(Package): """A compiler infrastructure to build source-to-source program transformation and analysis tools. @@ -36,7 +37,8 @@ class Rose(Package): homepage = "http://rosecompiler.org/" url = "https://github.com/rose-compiler/edg4x-rose" - version('master', branch='master', git='https://github.com/rose-compiler/edg4x-rose.git') + version('master', branch='master', + git='https://github.com/rose-compiler/edg4x-rose.git') patch('add_spack_compiler_recognition.patch') @@ -60,4 +62,3 @@ class Rose(Package): "--with-boost=" + boost.prefix, "--disable-boost-version-check") make("install-core") - diff --git a/var/spack/repos/builtin/packages/rsync/package.py b/var/spack/repos/builtin/packages/rsync/package.py index a9f8d4cfda..4e741b255f 100644 --- a/var/spack/repos/builtin/packages/rsync/package.py +++ b/var/spack/repos/builtin/packages/rsync/package.py @@ -24,8 +24,9 @@ ############################################################################## from spack import * + class Rsync(Package): - """rsync is an open source utility that provides fast incremental file transfer.""" + """An open source utility that provides fast incremental file transfer.""" homepage = "https://rsync.samba.org" url = "https://download.samba.org/pub/rsync/rsync-3.1.1.tar.gz" diff --git a/var/spack/repos/builtin/packages/rust/package.py b/var/spack/repos/builtin/packages/rust/package.py index 65f81ce534..629dfb4649 100644 --- a/var/spack/repos/builtin/packages/rust/package.py +++ b/var/spack/repos/builtin/packages/rust/package.py @@ -6,6 +6,7 @@ def get_submodules(): git = which('git') git('submodule', 'update', '--init', '--recursive') + class Rust(Package): """The rust programming language toolchain""" homepage = "http://www.rust-lang.org" diff --git a/var/spack/repos/builtin/packages/scalasca/package.py b/var/spack/repos/builtin/packages/scalasca/package.py index 98e43ee75a..228d814aed 100644 --- a/var/spack/repos/builtin/packages/scalasca/package.py +++ b/var/spack/repos/builtin/packages/scalasca/package.py @@ -27,10 +27,12 @@ from spack import * class Scalasca(Package): - """ - Scalasca is a software tool that supports the performance optimization of parallel programs by measuring and - analyzing their runtime behavior. The analysis identifies potential performance bottlenecks - in particular those - concerning communication and synchronization - and offers guidance in exploring their causes. + """Scalasca is a software tool that supports the performance optimization + of parallel programs by measuring and analyzing their runtime + behavior. The analysis identifies potential performance + bottlenecks - in particular those concerning communication and + synchronization - and offers guidance in exploring their causes. + """ homepage = "http://www.scalasca.org" @@ -44,7 +46,8 @@ class Scalasca(Package): depends_on("mpi") ########## - # Hard-code dependencies for Scalasca according to what stated in the release page + # Hard-code dependencies for Scalasca according to what stated in the + # release page # The OTF2 library path should be detected automatically from SCOREP # SCALASCA 2.2.2 depends_on("scorep@1.4:", when='@2.2.2') @@ -60,4 +63,4 @@ class Scalasca(Package): "--enable-shared"] configure(*configure_args) make() - make("install")
\ No newline at end of file + make("install") diff --git a/var/spack/repos/builtin/packages/scons/package.py b/var/spack/repos/builtin/packages/scons/package.py index 40ae4176dd..2c32bde4a1 100644 --- a/var/spack/repos/builtin/packages/scons/package.py +++ b/var/spack/repos/builtin/packages/scons/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Scons(Package): """SCons is a software construction tool""" homepage = "http://scons.org" diff --git a/var/spack/repos/builtin/packages/scotch/package.py b/var/spack/repos/builtin/packages/scotch/package.py index c2bad20c2f..94a323ce90 100644 --- a/var/spack/repos/builtin/packages/scotch/package.py +++ b/var/spack/repos/builtin/packages/scotch/package.py @@ -39,11 +39,16 @@ class Scotch(Package): version('6.0.0', 'c50d6187462ba801f9a82133ee666e8e') version('5.1.10b', 'f587201d6cf5cf63527182fbfba70753') - variant('mpi', default=False, description='Activate the compilation of parallel libraries') - variant('compression', default=True, description='Activate the posibility to use compressed files') - variant('esmumps', default=False, description='Activate the compilation of esmumps needed by mumps') - variant('shared', default=True, description='Build a shared version of the library') - variant('metis', default=True, description='Build metis and parmetis wrapper libraries') + variant('mpi', default=False, + description='Activate the compilation of parallel libraries') + variant('compression', default=True, + description='Activate the posibility to use compressed files') + variant('esmumps', default=False, + description='Activate the compilation of esmumps needed by mumps') + variant('shared', default=True, + description='Build a shared version of the library') + variant('metis', default=True, + description='Build metis and parmetis wrapper libraries') depends_on('flex', type='build') depends_on('bison', type='build') diff --git a/var/spack/repos/builtin/packages/scr/package.py b/var/spack/repos/builtin/packages/scr/package.py index b638688e7b..2b01c60b3e 100644 --- a/var/spack/repos/builtin/packages/scr/package.py +++ b/var/spack/repos/builtin/packages/scr/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Scr(Package): """SCR caches checkpoint data in storage on the compute nodes of a Linux cluster to provide a fast, scalable checkpoint/restart @@ -34,8 +35,10 @@ class Scr(Package): depends_on("mpi") # depends_on("dtcmp") - version('1.1-7', 'a5930e9ab27d1b7049447c2fd7734ebd', url='http://downloads.sourceforge.net/project/scalablecr/releases/scr-1.1-7.tar.gz') - version('1.1.8', '6a0f11ad18e27fcfc00a271ff587b06e', url='https://github.com/hpc/scr/releases/download/v1.1.8/scr-1.1.8.tar.gz') + version('1.1-7', 'a5930e9ab27d1b7049447c2fd7734ebd', + url='http://downloads.sourceforge.net/project/scalablecr/releases/scr-1.1-7.tar.gz') + version('1.1.8', '6a0f11ad18e27fcfc00a271ff587b06e', + url='https://github.com/hpc/scr/releases/download/v1.1.8/scr-1.1.8.tar.gz') def install(self, spec, prefix): configure("--prefix=" + prefix, diff --git a/var/spack/repos/builtin/packages/silo/package.py b/var/spack/repos/builtin/packages/silo/package.py index 017a09977a..5113c88bdf 100644 --- a/var/spack/repos/builtin/packages/silo/package.py +++ b/var/spack/repos/builtin/packages/silo/package.py @@ -38,7 +38,8 @@ class Silo(Package): variant('fortran', default=True, description='Enable Fortran support') variant('shared', default=True, description='Build shared libraries') - variant('silex', default=False, description='Builds Silex, a GUI for viewing Silo files') + variant('silex', default=False, + description='Builds Silex, a GUI for viewing Silo files') depends_on('hdf5') depends_on('qt', when='+silex') @@ -55,8 +56,10 @@ class Silo(Package): configure( '--prefix=%s' % prefix, - '--with-hdf5=%s,%s' % (spec['hdf5'].prefix.include, spec['hdf5'].prefix.lib), - '--with-zlib=%s,%s' % (spec['zlib'].prefix.include, spec['zlib'].prefix.lib), + '--with-hdf5=%s,%s' % (spec['hdf5'].prefix.include, + spec['hdf5'].prefix.lib), + '--with-zlib=%s,%s' % (spec['zlib'].prefix.include, + spec['zlib'].prefix.lib), '--enable-install-lite-headers', *config_args) diff --git a/var/spack/repos/builtin/packages/snappy/package.py b/var/spack/repos/builtin/packages/snappy/package.py index 836063f933..1e94980c92 100644 --- a/var/spack/repos/builtin/packages/snappy/package.py +++ b/var/spack/repos/builtin/packages/snappy/package.py @@ -22,9 +22,9 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -import os from spack import * + class Snappy(Package): """A fast compressor/decompressor: https://code.google.com/p/snappy""" diff --git a/var/spack/repos/builtin/packages/sparsehash/package.py b/var/spack/repos/builtin/packages/sparsehash/package.py index a72a5ce105..e5abd42ae6 100644 --- a/var/spack/repos/builtin/packages/sparsehash/package.py +++ b/var/spack/repos/builtin/packages/sparsehash/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Sparsehash(Package): """Sparse and dense hash-tables for C++ by Google""" homepage = "https://github.com/sparsehash/sparsehash" diff --git a/var/spack/repos/builtin/packages/spindle/package.py b/var/spack/repos/builtin/packages/spindle/package.py index bcdc7543a3..213d41e970 100644 --- a/var/spack/repos/builtin/packages/spindle/package.py +++ b/var/spack/repos/builtin/packages/spindle/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Spindle(Package): """Spindle improves the library-loading performance of dynamically linked HPC applications. Without Spindle large MPI jobs can diff --git a/var/spack/repos/builtin/packages/spot/package.py b/var/spack/repos/builtin/packages/spot/package.py index 21bb6f03a7..096aa24c02 100644 --- a/var/spack/repos/builtin/packages/spot/package.py +++ b/var/spack/repos/builtin/packages/spot/package.py @@ -23,16 +23,17 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os + class Spot(Package): - """Spot is a C++11 library for omega-automata manipulation and model checking.""" + """Spot is a C++11 library for omega-automata manipulation and model + checking.""" homepage = "https://spot.lrde.epita.fr/index.html" url = "http://www.lrde.epita.fr/dload/spot/spot-1.99.3.tar.gz" version('1.99.3', 'd53adcb2d0fe7c69f45d4e595a58254e') - #depends_on("gcc@4.8:", type='build') + # depends_on("gcc@4.8:", type='build') depends_on("python@3.2:") def install(self, spec, prefix): diff --git a/var/spack/repos/builtin/packages/sqlite/package.py b/var/spack/repos/builtin/packages/sqlite/package.py index 5e7ae4fb8b..513f8ec6d4 100644 --- a/var/spack/repos/builtin/packages/sqlite/package.py +++ b/var/spack/repos/builtin/packages/sqlite/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Sqlite(Package): """SQLite3 is an SQL database engine in a C library. Programs that link the SQLite3 library can have SQL database access without diff --git a/var/spack/repos/builtin/packages/stat/package.py b/var/spack/repos/builtin/packages/stat/package.py index a03713397b..ec2fae5e9b 100644 --- a/var/spack/repos/builtin/packages/stat/package.py +++ b/var/spack/repos/builtin/packages/stat/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Stat(Package): """Library to create, manipulate, and export graphs Graphlib.""" homepage = "http://paradyn.org/STAT/STAT.html" @@ -49,13 +50,14 @@ class Stat(Package): configure_args = [ "--enable-gui", "--prefix=%s" % prefix, - "--disable-examples", # Examples require MPI: avoid this dependency. + # Examples require MPI: avoid this dependency. + "--disable-examples", "--with-launchmon=%s" % spec['launchmon'].prefix, "--with-mrnet=%s" % spec['mrnet'].prefix, "--with-graphlib=%s" % spec['graphlib'].prefix, "--with-stackwalker=%s" % spec['dyninst'].prefix, "--with-libdwarf=%s" % spec['libdwarf'].prefix - ] + ] if '+dysect' in spec: configure_args.append('--enable-dysectapi') configure(*configure_args) diff --git a/var/spack/repos/builtin/packages/subversion/package.py b/var/spack/repos/builtin/packages/subversion/package.py index 68ee397857..26d143e4aa 100644 --- a/var/spack/repos/builtin/packages/subversion/package.py +++ b/var/spack/repos/builtin/packages/subversion/package.py @@ -23,7 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -#import os + class Subversion(Package): """Apache Subversion - an open source version control system.""" @@ -41,39 +41,40 @@ class Subversion(Package): # Optional: We need swig if we want the Perl, Python or Ruby # bindings. - #depends_on('swig') - #depends_on('python') - #depends_on('perl') - #depends_on('ruby') + # depends_on('swig') + # depends_on('python') + # depends_on('perl') + # depends_on('ruby') def install(self, spec, prefix): # configure, build, install: - # Ref: http://www.linuxfromscratch.org/blfs/view/svn/general/subversion.html + # Ref: + # http://www.linuxfromscratch.org/blfs/view/svn/general/subversion.html options = ['--prefix=%s' % prefix] options.append('--with-apr=%s' % spec['apr'].prefix) options.append('--with-apr-util=%s' % spec['apr-util'].prefix) options.append('--with-zlib=%s' % spec['zlib'].prefix) options.append('--with-sqlite=%s' % spec['sqlite'].prefix) options.append('--with-serf=%s' % spec['serf'].prefix) - #options.append('--with-swig=%s' % spec['swig'].prefix) + # options.append('--with-swig=%s' % spec['swig'].prefix) configure(*options) make() make('install') # python bindings - #make('swig-py', + # make('swig-py', # 'swig-pydir=/usr/lib/python2.7/site-packages/libsvn', # 'swig_pydir_extra=/usr/lib/python2.7/site-packages/svn') - #make('install-swig-py', + # make('install-swig-py', # 'swig-pydir=/usr/lib/python2.7/site-packages/libsvn', # 'swig_pydir_extra=/usr/lib/python2.7/site-packages/svn') # perl bindings - #make('swig-pl') - #make('install-swig-pl') + # make('swig-pl') + # make('install-swig-pl') # ruby bindings - #make('swig-rb') - #make('isntall-swig-rb') + # make('swig-rb') + # make('isntall-swig-rb') diff --git a/var/spack/repos/builtin/packages/sundials/package.py b/var/spack/repos/builtin/packages/sundials/package.py index e52b90eb8a..7582954ab1 100644 --- a/var/spack/repos/builtin/packages/sundials/package.py +++ b/var/spack/repos/builtin/packages/sundials/package.py @@ -36,11 +36,15 @@ class Sundials(Package): version('2.6.2', '3deeb0ede9f514184c6bd83ecab77d95') variant('mpi', default=True, description='Enable MPI support') - variant('lapack', default=True, description='Build with external BLAS/LAPACK libraries') - variant('klu', default=False, description='Build with SuiteSparse KLU libraries') - variant('superlu', default=False, description='Build with SuperLU_MT libraries') + variant('lapack', default=True, + description='Build with external BLAS/LAPACK libraries') + variant('klu', default=False, + description='Build with SuiteSparse KLU libraries') + variant('superlu', default=False, + description='Build with SuperLU_MT libraries') variant('openmp', default=False, description='Enable OpenMP support') - variant('pthread', default=True, description='Enable POSIX threads support') + variant('pthread', default=True, + description='Enable POSIX threads support') depends_on('cmake', type='build') depends_on('mpi', when='+mpi') diff --git a/var/spack/repos/builtin/packages/superlu-mt/package.py b/var/spack/repos/builtin/packages/superlu-mt/package.py index 5a9429d6e5..e849273e08 100644 --- a/var/spack/repos/builtin/packages/superlu-mt/package.py +++ b/var/spack/repos/builtin/packages/superlu-mt/package.py @@ -37,11 +37,13 @@ class SuperluMt(Package): version('3.1', '06ac62f1b4b7d17123fffa0d0c315e91') - variant('blas', default=True, description='Build with external BLAS library') + variant('blas', default=True, + description='Build with external BLAS library') # Must choose one or the other variant('openmp', default=False, description='Build with OpenMP support') - variant('pthread', default=True, description='Build with POSIX threads support') + variant('pthread', default=True, + description='Build with POSIX threads support') # NOTE: must link with a single-threaded BLAS library depends_on('blas', when='+blas') diff --git a/var/spack/repos/builtin/packages/swiftsim/package.py b/var/spack/repos/builtin/packages/swiftsim/package.py index 620d658a10..636aa26bd2 100644 --- a/var/spack/repos/builtin/packages/swiftsim/package.py +++ b/var/spack/repos/builtin/packages/swiftsim/package.py @@ -38,9 +38,11 @@ class Swiftsim(Package): homepage = 'http://icc.dur.ac.uk/swift/' url = 'http://gitlab.cosma.dur.ac.uk/swift/swiftsim/repository/archive.tar.gz?ref=v0.3.0' - version('0.3.0', git='https://gitlab.cosma.dur.ac.uk/swift/swiftsim.git', commit='254cc1b563b2f88ddcf437b1f71da123bb9db733') + version('0.3.0', git='https://gitlab.cosma.dur.ac.uk/swift/swiftsim.git', + commit='254cc1b563b2f88ddcf437b1f71da123bb9db733') - variant('mpi', default=True, description='Enable distributed memory parallelism') + variant('mpi', default=True, + description='Enable distributed memory parallelism') # Build dependencies depends_on('autoconf', type='build') diff --git a/var/spack/repos/builtin/packages/szip/package.py b/var/spack/repos/builtin/packages/szip/package.py index fd3a2a209d..b2ca6f3995 100644 --- a/var/spack/repos/builtin/packages/szip/package.py +++ b/var/spack/repos/builtin/packages/szip/package.py @@ -24,10 +24,13 @@ ############################################################################## from spack import * + class Szip(Package): - """Szip is an implementation of the extended-Rice lossless compression algorithm. - It provides lossless compression of scientific data, and is provided with HDF - software products.""" + """An implementation of the extended-Rice lossless compression algorithm. + It provides lossless compression of scientific data, and is provided + with HDF software products. + + """ homepage = "https://www.hdfgroup.org/doc_resource/SZIP/" url = "http://www.hdfgroup.org/ftp/lib-external/szip/2.1/src/szip-2.1.tar.gz" diff --git a/var/spack/repos/builtin/packages/tar/package.py b/var/spack/repos/builtin/packages/tar/package.py index 4dce0e5be1..7a72278b9a 100644 --- a/var/spack/repos/builtin/packages/tar/package.py +++ b/var/spack/repos/builtin/packages/tar/package.py @@ -23,8 +23,6 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import sys -import os class Tar(Package): diff --git a/var/spack/repos/builtin/packages/task/package.py b/var/spack/repos/builtin/packages/task/package.py index 8c3b412f48..785023fd03 100644 --- a/var/spack/repos/builtin/packages/task/package.py +++ b/var/spack/repos/builtin/packages/task/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Task(Package): """Feature-rich console based todo list manager""" homepage = "http://www.taskwarrior.org" diff --git a/var/spack/repos/builtin/packages/taskd/package.py b/var/spack/repos/builtin/packages/taskd/package.py index 1d7f9ed49e..d13f480374 100644 --- a/var/spack/repos/builtin/packages/taskd/package.py +++ b/var/spack/repos/builtin/packages/taskd/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Taskd(Package): """TaskWarrior task synchronization daemon""" # FIXME: add a proper url for your package's homepage here. diff --git a/var/spack/repos/builtin/packages/tau/package.py b/var/spack/repos/builtin/packages/tau/package.py index 3b181f3fa4..a77df8d37c 100644 --- a/var/spack/repos/builtin/packages/tau/package.py +++ b/var/spack/repos/builtin/packages/tau/package.py @@ -30,6 +30,7 @@ import os.path from llnl.util.filesystem import join_path + class Tau(Package): """ A portable profiling and tracing toolkit for performance @@ -45,15 +46,20 @@ class Tau(Package): version('2.23.1', '6593b47ae1e7a838e632652f0426fe72') # TODO : shmem variant missing - variant('download', default=False, description='Downloads and builds various dependencies') + variant('download', default=False, + description='Downloads and builds various dependencies') variant('scorep', default=False, description='Activates SCOREP support') variant('openmp', default=True, description='Use OpenMP threads') - variant('mpi', default=True, description='Specify use of TAU MPI wrapper library') + variant('mpi', default=True, + description='Specify use of TAU MPI wrapper library') variant('phase', default=True, description='Generate phase based profiles') - variant('comm', default=True, description=' Generate profiles with MPI communicator info') + variant('comm', default=True, + description=' Generate profiles with MPI communicator info') - # TODO : Try to build direct OTF2 support? Some parts of the OTF support library in TAU are non-conformant, - # TODO : and fail at compile-time. Further, SCOREP is compiled with OTF2 support. + # TODO : Try to build direct OTF2 support? Some parts of the OTF support + # TODO : library in TAU are non-conformant, + # TODO : and fail at compile-time. Further, SCOREP is compiled with OTF2 + # support. depends_on('pdt') # Required for TAU instrumentation depends_on('scorep', when='+scorep') depends_on('binutils', when='~download') @@ -65,13 +71,17 @@ class Tau(Package): ########## # Selecting a compiler with TAU configure is quite tricky: - # 1 - compilers are mapped to a given set of strings (and spack cc, cxx, etc. wrappers are not among them) + # 1 - compilers are mapped to a given set of strings + # (and spack cc, cxx, etc. wrappers are not among them) # 2 - absolute paths are not allowed - # 3 - the usual environment variables seems not to be checked ('CC', 'CXX' and 'FC') - # 4 - if no -cc=<compiler> -cxx=<compiler> is passed tau is built with system compiler silently + # 3 - the usual environment variables seems not to be checked + # ('CC', 'CXX' and 'FC') + # 4 - if no -cc=<compiler> -cxx=<compiler> is passed tau is built with + # system compiler silently # (regardless of what %<compiler> is used in the spec) # - # In the following we give TAU what he expects and put compilers into PATH + # In the following we give TAU what he expects and put compilers into + # PATH compiler_path = os.path.dirname(self.compiler.cc) os.environ['PATH'] = ':'.join([compiler_path, os.environ['PATH']]) compiler_options = ['-c++=%s' % self.compiler.cxx_names[0], @@ -80,7 +90,8 @@ class Tau(Package): compiler_options.append('-fortran=%s' % self.compiler.fc_names[0]) ########## - # Construct the string of custom compiler flags and append it to compiler related options + # Construct the string of custom compiler flags and append it to + # compiler related options useropt = ' '.join(useropt) useropt = "-useropt=%s" % useropt compiler_options.append(useropt) @@ -92,8 +103,9 @@ class Tau(Package): change_sed_delimiter('@', ';', 'utils/FixMakefile') change_sed_delimiter('@', ';', 'utils/FixMakefile.sed.default') - # TAU configure, despite the name , seems to be a manually written script (nothing related to autotools). - # As such it has a few #peculiarities# that make this build quite hackish. + # TAU configure, despite the name , seems to be a manually + # written script (nothing related to autotools). As such it has + # a few #peculiarities# that make this build quite hackish. options = ["-prefix=%s" % prefix, "-iowrapper", "-pdt=%s" % spec['pdt'].prefix] diff --git a/var/spack/repos/builtin/packages/tetgen/package.py b/var/spack/repos/builtin/packages/tetgen/package.py index 97aa68be65..7ac55a6785 100644 --- a/var/spack/repos/builtin/packages/tetgen/package.py +++ b/var/spack/repos/builtin/packages/tetgen/package.py @@ -36,7 +36,8 @@ class Tetgen(Package): url = "http://www.tetgen.org/files/tetgen1.4.3.tar.gz" version('1.4.3', 'd6a4bcdde2ac804f7ec66c29dcb63c18') - version('1.5.0', '3b9fd9cdec121e52527b0308f7aad5c1', url='http://www.tetgen.org/1.5/src/tetgen1.5.0.tar.gz') + version('1.5.0', '3b9fd9cdec121e52527b0308f7aad5c1', + url='http://www.tetgen.org/1.5/src/tetgen1.5.0.tar.gz') depends_on('cmake@2.8.7:', when='@1.5.0:', type='build') diff --git a/var/spack/repos/builtin/packages/texinfo/package.py b/var/spack/repos/builtin/packages/texinfo/package.py index 5c6fef0db6..ddb23e5d6f 100644 --- a/var/spack/repos/builtin/packages/texinfo/package.py +++ b/var/spack/repos/builtin/packages/texinfo/package.py @@ -27,10 +27,13 @@ from spack import * class Texinfo(Package): - """ - Texinfo is the official documentation format of the GNU project. It was invented by Richard Stallman and Bob - Chassell many years ago, loosely based on Brian Reid's Scribe and other formatting languages of the time. It is - used by many non-GNU projects as well.FIXME: put a proper description of your package here. + """Texinfo is the official documentation format of the GNU project. + + It was invented by Richard Stallman and Bob Chassell many years ago, + loosely based on Brian Reid's Scribe and other formatting languages + of the time. It is used by many non-GNU projects as well.FIXME: put a + proper description of your package here. + """ homepage = "https://www.gnu.org/software/texinfo/" url = "http://ftp.gnu.org/gnu/texinfo/texinfo-6.0.tar.gz" diff --git a/var/spack/repos/builtin/packages/texlive/package.py b/var/spack/repos/builtin/packages/texlive/package.py index d44a6e311e..64158e74cb 100644 --- a/var/spack/repos/builtin/packages/texlive/package.py +++ b/var/spack/repos/builtin/packages/texlive/package.py @@ -32,7 +32,8 @@ class Texlive(Package): homepage = "http://www.tug.org/texlive" - version('live', 'e671eea7f142c438959493cc42a2a59b', url="http://mirror.ctan.org/systems/texlive/tlnet/install-tl-unx.tar.gz") + version('live', 'e671eea7f142c438959493cc42a2a59b', + url="http://mirror.ctan.org/systems/texlive/tlnet/install-tl-unx.tar.gz") # There does not seem to be a complete list of schemes. # Examples include: diff --git a/var/spack/repos/builtin/packages/thrift/package.py b/var/spack/repos/builtin/packages/thrift/package.py index 025ee2b885..755f7a80b9 100644 --- a/var/spack/repos/builtin/packages/thrift/package.py +++ b/var/spack/repos/builtin/packages/thrift/package.py @@ -24,12 +24,16 @@ ############################################################################## from spack import * + class Thrift(Package): - """The Apache Thrift software framework, for scalable cross-language services - development, combines a software stack with a code generation engine to build - services that work efficiently and seamlessly between C++, Java, Python, PHP, - Ruby, Erlang, Perl, Haskell, C#, Cocoa, JavaScript, Node.js, Smalltalk, OCaml - and Delphi and other languages.""" + """Software framework for scalable cross-language services development. + + Thrift combines a software stack with a code generation engine to + build services that work efficiently and seamlessly between C++, + Java, Python, PHP, Ruby, Erlang, Perl, Haskell, C#, Cocoa, + JavaScript, Node.js, Smalltalk, OCaml and Delphi and other languages. + + """ homepage = "http://thrift.apache.org" url = "http://apache.mirrors.ionfish.org/thrift/0.9.2/thrift-0.9.2.tar.gz" @@ -37,8 +41,10 @@ class Thrift(Package): version('0.9.2', '89f63cc4d0100912f4a1f8a9dee63678') # Currently only support for c-family and python - variant('c', default=True, description="Build support for C-family languages") - variant('python', default=True, description="Build support for python") + variant('c', default=True, + description="Build support for C-family languages") + variant('python', default=True, + description="Build support for python") depends_on('jdk') depends_on('autoconf', type='build') @@ -66,7 +72,8 @@ class Thrift(Package): options.append('--enable-tests=no') options.append('--with-c=%s' % ('yes' if '+c' in spec else 'no')) - options.append('--with-python=%s' % ('yes' if '+python' in spec else 'no')) + options.append('--with-python=%s' % + ('yes' if '+python' in spec else 'no')) options.append('--with-java=%s' % ('yes' if '+java' in spec else 'no')) options.append('--with-go=%s' % ('yes' if '+go' in spec else 'no')) options.append('--with-lua=%s' % ('yes' if '+lua' in spec else 'no')) diff --git a/var/spack/repos/builtin/packages/tmuxinator/package.py b/var/spack/repos/builtin/packages/tmuxinator/package.py index b9c92ea4db..66da4006f2 100644 --- a/var/spack/repos/builtin/packages/tmuxinator/package.py +++ b/var/spack/repos/builtin/packages/tmuxinator/package.py @@ -24,17 +24,18 @@ ############################################################################## from spack import * + class Tmuxinator(Package): """A session configuration creator and manager for tmux""" homepage = "https://github.com/tmuxinator/tmuxinator" url = "https://github.com/tmuxinator/tmuxinator" version('0.6.11', - git='https://github.com/tmuxinator/tmuxinator', - tag='v0.6.11') + git='https://github.com/tmuxinator/tmuxinator', + tag='v0.6.11') extends('ruby') def install(self, spec, prefix): - gem('build', 'tmuxinator.gemspec') - gem('install', 'tmuxinator-{0}.gem'.format(self.version)) + gem('build', 'tmuxinator.gemspec') + gem('install', 'tmuxinator-{0}.gem'.format(self.version)) diff --git a/var/spack/repos/builtin/packages/triangle/package.py b/var/spack/repos/builtin/packages/triangle/package.py index bc8b0ec639..f4ee9ca1c9 100644 --- a/var/spack/repos/builtin/packages/triangle/package.py +++ b/var/spack/repos/builtin/packages/triangle/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Triangle(Package): """Triangle is a two-dimensional mesh generator and Delaunay triangulator. Triangle generates exact Delaunay triangulations, diff --git a/var/spack/repos/builtin/packages/trilinos/package.py b/var/spack/repos/builtin/packages/trilinos/package.py index 1d83e055c9..d39e45f054 100644 --- a/var/spack/repos/builtin/packages/trilinos/package.py +++ b/var/spack/repos/builtin/packages/trilinos/package.py @@ -56,17 +56,24 @@ class Trilinos(Package): version('11.14.2', 'a43590cf896c677890d75bfe75bc6254') version('11.14.1', '40febc57f76668be8b6a77b7607bb67f') - variant('metis', default=True, description='Compile with METIS and ParMETIS') - variant('mumps', default=True, description='Compile with support for MUMPS solvers') - variant('superlu-dist', default=True, description='Compile with SuperluDist solvers') - variant('hypre', default=True, description='Compile with Hypre preconditioner') + variant('metis', default=True, + description='Compile with METIS and ParMETIS') + variant('mumps', default=True, + description='Compile with support for MUMPS solvers') + variant('superlu-dist', default=True, + description='Compile with SuperluDist solvers') + variant('hypre', default=True, + description='Compile with Hypre preconditioner') variant('hdf5', default=True, description='Compile with HDF5') - variant('suite-sparse', default=True, description='Compile with SuiteSparse solvers') + variant('suite-sparse', default=True, + description='Compile with SuiteSparse solvers') # not everyone has py-numpy activated, keep it disabled by default to avoid # configure errors variant('python', default=False, description='Build python wrappers') - variant('shared', default=True, description='Enables the build of shared libraries') - variant('debug', default=False, description='Builds a debug version of the libraries') + variant('shared', default=True, + description='Enables the build of shared libraries') + variant('debug', default=False, + description='Builds a debug version of the libraries') variant('boost', default=True, description='Compile with Boost') depends_on('cmake', type='build') diff --git a/var/spack/repos/builtin/packages/udunits2/package.py b/var/spack/repos/builtin/packages/udunits2/package.py index aed39668fd..bae6414c5b 100644 --- a/var/spack/repos/builtin/packages/udunits2/package.py +++ b/var/spack/repos/builtin/packages/udunits2/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Udunits2(Package): """Automated units conversion""" diff --git a/var/spack/repos/builtin/packages/uncrustify/package.py b/var/spack/repos/builtin/packages/uncrustify/package.py index db96bc301e..c3182d0dc8 100644 --- a/var/spack/repos/builtin/packages/uncrustify/package.py +++ b/var/spack/repos/builtin/packages/uncrustify/package.py @@ -24,8 +24,9 @@ ############################################################################## from spack import * + class Uncrustify(Package): - """Source Code Beautifier for C, C++, C#, ObjectiveC, D, Java, Pawn and VALA""" + """Source Code Beautifier for C, C++, C#, ObjectiveC, Java, and others.""" homepage = "http://uncrustify.sourceforge.net/" url = "http://downloads.sourceforge.net/project/uncrustify/uncrustify/uncrustify-0.61/uncrustify-0.61.tar.gz" diff --git a/var/spack/repos/builtin/packages/unibilium/package.py b/var/spack/repos/builtin/packages/unibilium/package.py index d9e0ad6bcb..943e4737e1 100644 --- a/var/spack/repos/builtin/packages/unibilium/package.py +++ b/var/spack/repos/builtin/packages/unibilium/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Unibilium(Package): """A terminfo parsing library""" homepage = "https://github.com/mauke/unibilium" @@ -32,5 +33,5 @@ class Unibilium(Package): version('1.2.0', '9b1c97839a880a373da6c097443b43c4') def install(self, spec, prefix): - make("PREFIX="+prefix) - make("install", "PREFIX="+prefix) + make("PREFIX=" + prefix) + make("install", "PREFIX=" + prefix) diff --git a/var/spack/repos/builtin/packages/util-linux/package.py b/var/spack/repos/builtin/packages/util-linux/package.py index bf6972683d..99af170ca1 100644 --- a/var/spack/repos/builtin/packages/util-linux/package.py +++ b/var/spack/repos/builtin/packages/util-linux/package.py @@ -23,7 +23,7 @@ # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * -import os + class UtilLinux(Package): """Util-linux is a suite of essential utilities for any Linux system.""" @@ -36,9 +36,9 @@ class UtilLinux(Package): depends_on("python@2.7:") def install(self, spec, prefix): - configure("--prefix=%s" % prefix, - "PKG_CONFIG_PATH=%s/pkgconfig" % spec['python'].prefix.lib, - "--disable-use-tty-group") + configure("--prefix=%s" % prefix, + "PKG_CONFIG_PATH=%s/pkgconfig" % spec['python'].prefix.lib, + "--disable-use-tty-group") make() make("install") diff --git a/var/spack/repos/builtin/packages/valgrind/package.py b/var/spack/repos/builtin/packages/valgrind/package.py index afd4cc6ad0..e7ae227c27 100644 --- a/var/spack/repos/builtin/packages/valgrind/package.py +++ b/var/spack/repos/builtin/packages/valgrind/package.py @@ -27,12 +27,15 @@ from spack import * class Valgrind(Package): - """ - Valgrind is an instrumentation framework for building dynamic analysis tools. There are Valgrind tools that can - automatically detect many memory management and threading bugs, and profile your programs in detail. You can also - use Valgrind to build new tools. + """An instrumentation framework for building dynamic analysis. + + There are Valgrind tools that can automatically detect many memory + management and threading bugs, and profile your programs in + detail. You can also use Valgrind to build new tools. + + Valgrind is Open Source / Free Software, and is freely available + under the GNU General Public License, version 2. - Valgrind is Open Source / Free Software, and is freely available under the GNU General Public License, version 2. """ homepage = "http://valgrind.org/" url = "http://valgrind.org/downloads/valgrind-3.11.0.tar.bz2" @@ -42,7 +45,8 @@ class Valgrind(Package): version('3.10.0', '7c311a72a20388aceced1aa5573ce970') variant('mpi', default=True, description='Activates MPI support for valgrind') - variant('boost', default=True, description='Activates boost support for valgrind') + variant('boost', default=True, + description='Activates boost support for valgrind') depends_on('mpi', when='+mpi') depends_on('boost', when='+boost') diff --git a/var/spack/repos/builtin/packages/vim/package.py b/var/spack/repos/builtin/packages/vim/package.py index e0dfb64879..01eccfab57 100644 --- a/var/spack/repos/builtin/packages/vim/package.py +++ b/var/spack/repos/builtin/packages/vim/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Vim(Package): """Vim is a highly configurable text editor built to enable efficient text editing. It is an improved version of the vi editor distributed with most @@ -51,7 +52,7 @@ class Vim(Package): feature_sets = ('huge', 'big', 'normal', 'small', 'tiny') for fs in feature_sets: - variant(fs, default=False, description="Use '%s' feature set" % fs) + variant(fs, default=False, description="Use '%s' feature set" % fs) variant('python', default=False, description="build with Python") depends_on('python', when='+python') @@ -66,42 +67,44 @@ class Vim(Package): # virtual dependency? def install(self, spec, prefix): - feature_set = None - for fs in self.feature_sets: - if "+" + fs in spec: - if feature_set is not None: - tty.error("Only one feature set allowed, both %s and %s specified" - % (feature_set, fs)) - feature_set = fs - if '+gui' in spec: - if feature_set is not None: - if feature_set is not 'huge': - tty.error("+gui variant requires 'huge' feature set, %s was specified" - % feature_set) - feature_set = 'huge' - if feature_set is None: - feature_set = 'normal' - - configure_args = [] - configure_args.append("--with-features=" + feature_set) - - if '+python' in spec: - configure_args.append("--enable-pythoninterp=yes") - else: - configure_args.append("--enable-pythoninterp=dynamic") - - if '+ruby' in spec: - configure_args.append("--enable-rubyinterp=yes") - else: - configure_args.append("--enable-rubyinterp=dynamic") - - if '+gui' in spec: - configure_args.append("--enable-gui=auto") - - if '+cscope' in spec: - configure_args.append("--enable-cscope") - - configure("--prefix=%s" % prefix, *configure_args) - - make() - make("install") + feature_set = None + for fs in self.feature_sets: + if "+" + fs in spec: + if feature_set is not None: + tty.error( + "Only one feature set allowed, specified %s and %s" + % (feature_set, fs)) + feature_set = fs + if '+gui' in spec: + if feature_set is not None: + if feature_set is not 'huge': + tty.error( + "+gui variant requires 'huge' feature set, " + "%s was specified" % feature_set) + feature_set = 'huge' + if feature_set is None: + feature_set = 'normal' + + configure_args = [] + configure_args.append("--with-features=" + feature_set) + + if '+python' in spec: + configure_args.append("--enable-pythoninterp=yes") + else: + configure_args.append("--enable-pythoninterp=dynamic") + + if '+ruby' in spec: + configure_args.append("--enable-rubyinterp=yes") + else: + configure_args.append("--enable-rubyinterp=dynamic") + + if '+gui' in spec: + configure_args.append("--enable-gui=auto") + + if '+cscope' in spec: + configure_args.append("--enable-cscope") + + configure("--prefix=%s" % prefix, *configure_args) + + make() + make("install") diff --git a/var/spack/repos/builtin/packages/visit/package.py b/var/spack/repos/builtin/packages/visit/package.py index ae19fd0450..d88caeb00a 100644 --- a/var/spack/repos/builtin/packages/visit/package.py +++ b/var/spack/repos/builtin/packages/visit/package.py @@ -26,7 +26,8 @@ from spack import * class Visit(Package): - """VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool.""" + """VisIt is an Open Source, interactive, scalable, visualization, + animation and analysis tool.""" homepage = "https://wci.llnl.gov/simulation/computer-codes/visit/" url = "http://portal.nersc.gov/project/visit/releases/2.10.1/visit2.10.1.tar.gz" @@ -42,12 +43,15 @@ class Visit(Package): with working_dir('spack-build', create=True): feature_args = std_cmake_args[:] - feature_args.extend(["-DVTK_MAJOR_VERSION=6", - "-DVTK_MINOR_VERSION=1", - "-DVISIT_LOC_QMAKE_EXE:FILEPATH=%s/qmake-qt4" % spec['qt'].prefix.bin, - "-DPYTHON_EXECUTABLE:FILEPATH=%s/python" % spec['python'].prefix.bin, - "-DVISIT_SILO_DIR:PATH=%s" % spec['silo'].prefix, - "-DVISIT_HDF5_DIR:PATH=%s" % spec['hdf5'].prefix]) + feature_args.extend([ + "-DVTK_MAJOR_VERSION=6", + "-DVTK_MINOR_VERSION=1", + "-DVISIT_LOC_QMAKE_EXE:FILEPATH=%s/qmake-qt4" % spec[ + 'qt'].prefix.bin, + "-DPYTHON_EXECUTABLE:FILEPATH=%s/python" % spec[ + 'python'].prefix.bin, + "-DVISIT_SILO_DIR:PATH=%s" % spec['silo'].prefix, + "-DVISIT_HDF5_DIR:PATH=%s" % spec['hdf5'].prefix]) cmake('../src', *feature_args) diff --git a/var/spack/repos/builtin/packages/vtk/package.py b/var/spack/repos/builtin/packages/vtk/package.py index 5c196b5ea8..087c0e93eb 100644 --- a/var/spack/repos/builtin/packages/vtk/package.py +++ b/var/spack/repos/builtin/packages/vtk/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Vtk(Package): """The Visualization Toolkit (VTK) is an open-source, freely available software system for 3D computer graphics, image @@ -31,9 +32,11 @@ class Vtk(Package): homepage = "http://www.vtk.org" url = "http://www.vtk.org/files/release/6.1/VTK-6.1.0.tar.gz" - version("7.0.0", "5fe35312db5fb2341139b8e4955c367d", url="http://www.vtk.org/files/release/7.0/VTK-7.0.0.tar.gz") + version("7.0.0", "5fe35312db5fb2341139b8e4955c367d", + url="http://www.vtk.org/files/release/7.0/VTK-7.0.0.tar.gz") - version("6.3.0", '0231ca4840408e9dd60af48b314c5b6d', url="http://www.vtk.org/files/release/6.3/VTK-6.3.0.tar.gz") + version("6.3.0", '0231ca4840408e9dd60af48b314c5b6d', + url="http://www.vtk.org/files/release/6.3/VTK-6.3.0.tar.gz") version('6.1.0', '25e4dfb3bad778722dcaec80cd5dab7d') @@ -41,7 +44,8 @@ class Vtk(Package): depends_on("qt") # VTK7 defaults to OpenGL2 rendering backend - variant('opengl2', default=True, description='Build with OpenGL instead of OpenGL2 as rendering backend') + variant('opengl2', default=True, + description='Build with OpenGL instead of OpenGL2 backend') def install(self, spec, prefix): def feature_to_bool(feature, on='ON', off='OFF'): @@ -67,7 +71,7 @@ class Vtk(Package): "-DVTK_Group_Qt=OFF", "-DModule_vtkGUISupportQt:BOOL=ON", "-DModule_vtkGUISupportQtOpenGL:BOOL=ON" - ]) + ]) if spec['qt'].satisfies('@5'): cmake_args.append("-DVTK_QT_VERSION:STRING=5") @@ -76,7 +80,8 @@ class Vtk(Package): cmake_args.append("-DCMAKE_C_FLAGS=-DGLX_GLXEXT_LEGACY") cmake_args.append("-DCMAKE_CXX_FLAGS=-DGLX_GLXEXT_LEGACY") - cmake_args.append('-DVTK_RENDERING_BACKEND:STRING=%s' % feature_to_bool('+opengl2', 'OpenGL2', 'OpenGL')) + cmake_args.append('-DVTK_RENDERING_BACKEND:STRING=%s' % + feature_to_bool('+opengl2', 'OpenGL2', 'OpenGL')) cmake(*cmake_args) make() diff --git a/var/spack/repos/builtin/packages/wget/package.py b/var/spack/repos/builtin/packages/wget/package.py index 532cf332e9..aff771b723 100644 --- a/var/spack/repos/builtin/packages/wget/package.py +++ b/var/spack/repos/builtin/packages/wget/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Wget(Package): """GNU Wget is a free software package for retrieving files using HTTP, HTTPS and FTP, the most widely-used Internet protocols. It @@ -40,9 +41,11 @@ class Wget(Package): depends_on("openssl") def install(self, spec, prefix): - configure("--prefix=%s" % prefix, - "--with-ssl=openssl", - "OPENSSL_CFLAGS=-I%s" % spec['openssl'].prefix.include, - "OPENSSL_LIBS=-L%s -lssl -lcrypto -lz" % spec['openssl'].prefix.lib) + configure( + "--prefix=%s" % prefix, + "--with-ssl=openssl", + "OPENSSL_CFLAGS=-I%s" % spec['openssl'].prefix.include, + "OPENSSL_LIBS=-L%s -lssl -lcrypto -lz" % spec[ + 'openssl'].prefix.lib) make() make("install") diff --git a/var/spack/repos/builtin/packages/wx/package.py b/var/spack/repos/builtin/packages/wx/package.py index c000824803..5a80ca1c1f 100644 --- a/var/spack/repos/builtin/packages/wx/package.py +++ b/var/spack/repos/builtin/packages/wx/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Wx(Package): """wxWidgets is a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms @@ -43,8 +44,8 @@ class Wx(Package): depends_on('gtkplus') def install(self, spec, prefix): - configure("--prefix=%s" % prefix, "--enable-unicode", "--disable-precomp-headers") + configure("--prefix=%s" % prefix, "--enable-unicode", + "--disable-precomp-headers") make(parallel=False) make("install") - diff --git a/var/spack/repos/builtin/packages/wxpropgrid/package.py b/var/spack/repos/builtin/packages/wxpropgrid/package.py index 2283e1acf1..cc9ff445d6 100644 --- a/var/spack/repos/builtin/packages/wxpropgrid/package.py +++ b/var/spack/repos/builtin/packages/wxpropgrid/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Wxpropgrid(Package): """wxPropertyGrid is a property sheet control for wxWidgets. In other words, it is a specialized two-column grid for editing @@ -37,8 +38,8 @@ class Wxpropgrid(Package): depends_on("wx") def install(self, spec, prefix): - configure("--prefix=%s" % prefix, "--with-wxdir=%s" % spec['wx'].prefix.bin, "--enable-unicode") + configure("--prefix=%s" % prefix, "--with-wxdir=%s" % + spec['wx'].prefix.bin, "--enable-unicode") make() make("install") - diff --git a/var/spack/repos/builtin/packages/xcb-proto/package.py b/var/spack/repos/builtin/packages/xcb-proto/package.py index efcbdf0aea..587983f6bd 100644 --- a/var/spack/repos/builtin/packages/xcb-proto/package.py +++ b/var/spack/repos/builtin/packages/xcb-proto/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class XcbProto(Package): """Protocol for libxcb""" diff --git a/var/spack/repos/builtin/packages/xorg-util-macros/package.py b/var/spack/repos/builtin/packages/xorg-util-macros/package.py index 963d93442f..cd50d46826 100644 --- a/var/spack/repos/builtin/packages/xorg-util-macros/package.py +++ b/var/spack/repos/builtin/packages/xorg-util-macros/package.py @@ -24,11 +24,12 @@ ############################################################################## from spack import * + class XorgUtilMacros(Package): - """The util-macros package contains the m4 macros used by all of the Xorg packages.""" + """The m4 macros used by all of the Xorg packages.""" homepage = "http://www.example.com" - url = "http://ftp.x.org/pub/individual/util/util-macros-1.19.0.tar.bz2" + url = "http://ftp.x.org/pub/individual/util/util-macros-1.19.0.tar.bz2" version('1.19.0', '1cf984125e75f8204938d998a8b6c1e1') diff --git a/var/spack/repos/builtin/packages/xproto/package.py b/var/spack/repos/builtin/packages/xproto/package.py index 7be6defb83..dbceaa1575 100644 --- a/var/spack/repos/builtin/packages/xproto/package.py +++ b/var/spack/repos/builtin/packages/xproto/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Xproto(Package): """The Xorg protocol headers provide the header files required to build the system, and to allow other applications to build against diff --git a/var/spack/repos/builtin/packages/xz/package.py b/var/spack/repos/builtin/packages/xz/package.py index b3ef7808aa..a8ab959a62 100644 --- a/var/spack/repos/builtin/packages/xz/package.py +++ b/var/spack/repos/builtin/packages/xz/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Xz(Package): """XZ Utils is free general-purpose data compression software with high compression ratio. XZ Utils were written for POSIX-like @@ -39,4 +40,3 @@ class Xz(Package): configure("--prefix=%s" % prefix) make() make("install") - diff --git a/var/spack/repos/builtin/packages/yasm/package.py b/var/spack/repos/builtin/packages/yasm/package.py index e05160c8ea..f14bdbcee7 100644 --- a/var/spack/repos/builtin/packages/yasm/package.py +++ b/var/spack/repos/builtin/packages/yasm/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Yasm(Package): """Yasm is a complete rewrite of the NASM-2.11.06 assembler. It supports the x86 and AMD64 instruction sets, accepts NASM and diff --git a/var/spack/repos/builtin/packages/zeromq/package.py b/var/spack/repos/builtin/packages/zeromq/package.py index 9bdd5861e0..6a657dc39c 100644 --- a/var/spack/repos/builtin/packages/zeromq/package.py +++ b/var/spack/repos/builtin/packages/zeromq/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Zeromq(Package): """ The ZMQ networking/concurrency library and core API """ homepage = "http://zguide.zeromq.org/" @@ -38,7 +39,7 @@ class Zeromq(Package): depends_on("libsodium") def install(self, spec, prefix): - configure("--with-libsodium","--prefix=%s" % prefix) + configure("--with-libsodium", "--prefix=%s" % prefix) make() make("install") diff --git a/var/spack/repos/builtin/packages/zfp/package.py b/var/spack/repos/builtin/packages/zfp/package.py index 878b65118f..a898ab03d3 100644 --- a/var/spack/repos/builtin/packages/zfp/package.py +++ b/var/spack/repos/builtin/packages/zfp/package.py @@ -24,12 +24,15 @@ ############################################################################## from spack import * + class Zfp(Package): - """zfp is an open source C library for compressed floating-point arrays that supports - very high throughput read and write random acces, target error bounds or bit rates. - Although bit-for-bit lossless compression is not always possible, zfp is usually - accurate to within machine epsilon in near-lossless mode, and is often orders of - magnitude more accurate than other lossy compressors. + """zfp is an open source C library for compressed floating-point arrays + that supports very high throughput read and write random acces, + target error bounds or bit rates. Although bit-for-bit lossless + compression is not always possible, zfp is usually accurate to + within machine epsilon in near-lossless mode, and is often orders + of magnitude more accurate than other lossy compressors. + """ homepage = "http://computation.llnl.gov/projects/floating-point-compression" diff --git a/var/spack/repos/builtin/packages/zlib/package.py b/var/spack/repos/builtin/packages/zlib/package.py index e1cbdc7e28..6d799fb05a 100644 --- a/var/spack/repos/builtin/packages/zlib/package.py +++ b/var/spack/repos/builtin/packages/zlib/package.py @@ -24,11 +24,10 @@ ############################################################################## from spack import * + class Zlib(Package): - """zlib is designed to be a free, general-purpose, legally unencumbered -- - that is, not covered by any patents -- lossless data-compression library for - use on virtually any computer hardware and operating system. - """ + """A free, general-purpose, legally unencumbered lossless + data-compression library.""" homepage = "http://zlib.net" url = "http://zlib.net/zlib-1.2.8.tar.gz" diff --git a/var/spack/repos/builtin/packages/zoltan/package.py b/var/spack/repos/builtin/packages/zoltan/package.py index 841ff3f4a2..0094395968 100644 --- a/var/spack/repos/builtin/packages/zoltan/package.py +++ b/var/spack/repos/builtin/packages/zoltan/package.py @@ -22,16 +22,22 @@ # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## -import re, os, glob +import re +import os +import glob from spack import * + class Zoltan(Package): - """The Zoltan library is a toolkit of parallel combinatorial algorithms for - parallel, unstructured, and/or adaptive scientific applications. Zoltan's - largest component is a suite of dynamic load-balancing and paritioning - algorithms that increase applications' parallel performance by reducing - idle time. Zoltan also has graph coloring and graph ordering algorithms, - which are useful in task schedulers and parallel preconditioners.""" + """The Zoltan library is a toolkit of parallel combinatorial algorithms + for parallel, unstructured, and/or adaptive scientific + applications. Zoltan's largest component is a suite of dynamic + load-balancing and paritioning algorithms that increase + applications' parallel performance by reducing idle time. Zoltan + also has graph coloring and graph ordering algorithms, which are + useful in task schedulers and parallel preconditioners. + + """ homepage = "http://www.cs.sandia.gov/zoltan" base_url = "http://www.cs.sandia.gov/~kddevin/Zoltan_Distributions" @@ -41,8 +47,10 @@ class Zoltan(Package): version('3.6', '9cce794f7241ecd8dbea36c3d7a880f9') version('3.3', '5eb8f00bda634b25ceefa0122bd18d65') - variant('debug', default=False, description='Builds a debug version of the library') - variant('shared', default=True, description='Builds a shared version of the library') + variant('debug', default=False, + description='Builds a debug version of the library') + variant('shared', default=True, + description='Builds a shared version of the library') variant('fortran', default=True, description='Enable Fortran support') variant('mpi', default=False, description='Enable MPI support') @@ -51,8 +59,11 @@ class Zoltan(Package): def install(self, spec, prefix): config_args = [ - '--enable-f90interface' if '+fortan' in spec else '--disable-f90interface', - '--enable-mpi' if '+mpi' in spec else '--disable-mpi', + '--enable-f90interface' + if '+fortan' in spec else '--disable-f90interface', + + '--enable-mpi' + if '+mpi' in spec else '--disable-mpi', ] config_cflags = [ '-O0' if '+debug' in spec else '-O3', @@ -68,7 +79,8 @@ class Zoltan(Package): config_args.append('CC=%s/mpicc' % spec['mpi'].prefix.bin) config_args.append('CXX=%s/mpicxx' % spec['mpi'].prefix.bin) config_args.append('--with-mpi=%s' % spec['mpi'].prefix) - config_args.append('--with-mpi-compilers=%s' % spec['mpi'].prefix.bin) + config_args.append('--with-mpi-compilers=%s' % + spec['mpi'].prefix.bin) # NOTE: Early versions of Zoltan come packaged with a few embedded # library packages (e.g. ParMETIS, Scotch), which messes with Spack's @@ -89,13 +101,15 @@ class Zoltan(Package): make() make('install') - # NOTE: Unfortunately, Zoltan doesn't provide any configuration options for - # the extension of the output library files, so this script must change these - # extensions as a post-processing step. + # NOTE: Unfortunately, Zoltan doesn't provide any configuration + # options for the extension of the output library files, so this + # script must change these extensions as a post-processing step. if '+shared' in spec: for libpath in glob.glob('lib/*.a'): - libdir, libname = (os.path.dirname(libpath), os.path.basename(libpath)) - move(libpath, os.path.join(libdir, re.sub(r'\.a$', '.so', libname))) + libdir, libname = (os.path.dirname(libpath), + os.path.basename(libpath)) + move(libpath, os.path.join( + libdir, re.sub(r'\.a$', '.so', libname))) mkdirp(prefix) move('include', prefix) diff --git a/var/spack/repos/builtin/packages/zsh/package.py b/var/spack/repos/builtin/packages/zsh/package.py index 2c9ed4c6e7..4c27cd3ec2 100644 --- a/var/spack/repos/builtin/packages/zsh/package.py +++ b/var/spack/repos/builtin/packages/zsh/package.py @@ -24,6 +24,7 @@ ############################################################################## from spack import * + class Zsh(Package): """ Zsh is a shell designed for interactive use, although it is also a powerful |